TCONS_00017874 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017874
Unique NameTCONS_00017874
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length409

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017874 ID=TCONS_00017874|Name=TCONS_00017874|organism=Clytia hemisphaerica|type=transcript|length=409bp
GAatagaaaattgtaaaaaatcaaaaatataaaaaatggaaATGGCCTGT
CCAGGCAATGACGGTAGAAGTTGTTGTAAAGAAAAGTGGTGGATTTCAAA
GGGCAGCCAATCAGCATTGAAGAACCAATCTAGAAATATCCCAGTCGTTC
TAAATGTCGTGGACGTAAGGATGGCTTGTTTGGATGTTGTTTGGACGTTG
TTTGGATGTTGTTTGGATGATAGATTGATGATTTTTTACTTCCAACAATG
ATGCAAATTTCCACTACCTCACACCCGTGGAAGCTCACATGGTCATACAA
GAATCACAAGATGTCTGTACGCCAAAAAGATTTATTCGCAAATGACTCTC
GATTCATTTCCAATATGGAGAGATCTTGAACAACAAACTGGAGAGCGTTT
ATACATGTA
Run BLAST on NCBI

transcript from alignment at sc0000278:248584..251322-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017874 ID=TCONS_00017874|Name=TCONS_00017874|organism=Clytia hemisphaerica|type=transcript|length=2739bp|location=Sequence derived from alignment at sc0000278:248584..251322- (Clytia hemisphaerica)
GAATAGAAAATTGTAAAAAATCAAAAATATAAAAAATGGAAATGGCCTGT
CCAGGCAATGACGGTAGAAGTTGTTGTAAAGAAAAGTGGTGGATTTCAAA
GGGCAGCCAATCAGCATTGAAGAACCAATCTAGAAATATCCCAGTCGTTC
TAAATGTCGTGGACGTAAGGATGGCTTGTTTGGATGTTGTTTGGACGTTG
TTTGGATGTTGTTTGGATGATAGATTGATGATTTTTTACTTCCAACAATG
ATGCAAAGTAAGAAAGATCTTTTATGAAAACTCCATATTTAGAACTACGT
TATGAAAAGAACTTTCGTTTACAATCAAAATCATTCCATAATATTGTTCC
TTATGGGGAGAAATGTTAAGAGAAATCATTTAACGAATTTATTTTTGACC
ATTTGCTTACACACTATATTTTAACAAAAGCTTTCTACCGCTCCCGCCGT
GCCCGCGAGCTCAAAGTACAAATTCTTTTGTTAACACTGCCTCACAGGGC
CAATGGTGAGTGGAAGTGTGAGACTTTATTTTTAGGCTGTATGGAGCAGA
GCCCTAACGGAGCTCGGATATACTAACTGTGGCGGTTTTGTGGAGGTCTT
TGATTCGGATTGCATCAGATTTTAGCTACATGTCAGTTGGTTTGGTAACA
CGAGCCTTGTGTAAAAAAACAATTCTCTGTTTCCTAAATAAACAGGATTC
ATTTTTATTGCTCAGTGAATCAATGTCTATTCTGCAAGATTAATATAAGT
AGAATTTGCAGTCGTGTAAAAAATTCTCTGGCAGTTCTCATTAAGTTAGT
CATTAGTGTTTACTGACCTTCGAGTGTTGCGGAACACATACGATACTGTT
TTCACGAAAATATGTATGACGTCATTGTTATTGGGGCAGGAATAAATGGC
AGCGCAACAGCTTATGAGCTCAGAAATAAACAACAAAAAAATGTTCTTCT
CTTAGAACAGGTTTGTATAATTCCATTCTAAAATATCTTTGTAACGACTC
ATTATGAGCTCAGAAATTAAAAACACAAAAATGTCCTACTTTAAGAACAG
GTTTTCTAAAATATTTTTGCAAATAATTTCGAGCTCAGAAATAGCCAACA
CGAAAAAAAAATGTGTCTCTTGTAGAACAGGCTTTTAGAAATCCACTCTA
AAATATCTTTACAATGAATTATGAGCTCAGTACAGATAATCAACACACAA
AAAAGTTTTTTTTAACAGACTTTTAAAAATCCGTTTTAGAATATCTTTAC
AATGAATTATGTGCTCAGAAAAAAACAAGACAAAATTTTTTTTTTTAAAC
AGGCTTTTAAAAATCCACTTTAAGATATATTTACAATGAATTTTCAGCTC
AGAAAAAGCCAACACGAAAATGTGTCTCTTGTAGAACAGGCTTTTTTAAA
ATCCACTCTTAAATATCTTTACAATGAATTATGAGCTCAGTACAGATAAT
CAACACAAAAAAGTTTTTTTTTAACAGGCTTTTAAAAATCCACTTTAAAA
TATCTTTACAATGAATTATGAGCTCAGTACAGATAATCAACACAAAAGAG
TTTTTTTAACAGACTTTTAAAAATCCACTATTAAATATCTTTACAATGAA
TTATAAGCTCAGAAAAAAAAACAGCACAAAAATGTGTCTATTGTAGAACA
GGCTTTTTTTAAATCCACTTTAAAATATCTTTACAATGAATTATGAGCTC
AGTACAGATAATCAACACAAAAAAGTTTTTTTTAACAGACTTTTTTAAAT
CCACTTTAAAATATCTTTACAATGAATTATGAGCTCAGTACAGATAATCA
ACACAAAAAAGTGTTTTTAACAGACTTTTAAAAATCCATTATTAAATATC
TTTACAATGAATTATAAGCTCAGAAAAAAAAACAGCATAAAAATGTGTCT
ATTGTAGAACAGGCTTTTTTTAAATCCACTTTAAAATATCTTCACAATGA
ATTATGAGCTCAGTACAGACAATCAACACAAAAAAGATTTTTTTAACAGA
CTTTTTTAAATCCACTTTAAAATATCTTTACAATGAATTGTGTGCTCAGA
AAAAAACAGCACAAAAATGTTCTTCTTTTCGAAATGGTAGACATAAATCC
ACTTTTTCATTTTAGAGAGTATCACTCTTGTGTAACTATTCACGATAAAT
GTTTGAATTATTGAGCACATGGCACACTTACTAAAAACCCTAGTAATGTC
ATTGGGTAGGTTGCTGGCATCCACCAACGGATTCGTGCTCCTTATACCCT
ATGGGCTCCTATACTACTTGGGGTTTTGTAGAGGTCTGCGATTCAGACTA
GTCATTGGGTAGATAGAGCAGTAAAGTAATTTCGTGAAATCATCAGATGA
GATGGAAATTTTATAAGATATTTTAATAATTGGTCATTTGAAGTAATAAA
AATGACGCGTTCTTTAGAAAAAGTAACAAAATTGTTTTATTACTCGTTAA
TGACCAACCGAATCAAATAAGAGCTTGTAAAAAACCACCTGGTCCCGAAA
TTGCATTGCTTGGTGCTTATCATGGATGAAGGTTTTGAAAAATATTGACA
ATTCTACAATTTTAAATCTTGTTATTTTCATGTTTAGTTTCCACTACCTC
ACACCCGTGGAAGCTCACATGGTCATACAAGAATCACAAGATGTCTGTAC
GCCAAAAAGATTTATTCGCAAATGACTCTCGATTCATTTCCAATATGGAG
AGATCTTGAACAACAAACTGGAGAGCGTTTATACATGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010015XLOC_010015Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017874-exon-sc0000278-1575043694:251066..251322TCONS_00017874-exon-sc0000278-1575043694:251066..251322Clytia hemisphaericaexon
TCONS_00017874-exon-sc0000278-1575043694:248584..248735TCONS_00017874-exon-sc0000278-1575043694:248584..248735Clytia hemisphaericaexon
TCONS_00017874-exon-sc0000278-1510915933:251066..251322TCONS_00017874-exon-sc0000278-1510915933:251066..251322Clytia hemisphaericaexon
TCONS_00017874-exon-sc0000278-1510915933:248584..248735TCONS_00017874-exon-sc0000278-1510915933:248584..248735Clytia hemisphaericaexon
TCONS_00017874-exon-sc0000278-1491911889:251066..251322TCONS_00017874-exon-sc0000278-1491911889:251066..251322Clytia hemisphaericaexon
TCONS_00017874-exon-sc0000278-1491911889:248584..248735TCONS_00017874-exon-sc0000278-1491911889:248584..248735Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000278supercontigsc0000278:248584..251322 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.998214	1.18764	0.200849	0	0.478437	0.567101	1.53709	1.41167	1.1966	0.338243	0.261358	0.472888	1.13146	0.322115	0.710553	1.18615	0.231033	2.19214	0	0	0.215894	0	0	0.777907	1.59242	0.812556	0.695956	1.10992	0.360203	0.581785
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017874 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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