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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017866 ID=TCONS_00017866|Name=TCONS_00017866|organism=Clytia hemisphaerica|type=transcript|length=1271bp
tggtggcaaggtggtgtttttgaggttgaagtttgaaaatttcggACCGG
AAAttaatttcttatacacaacacgtcttttgcatctttctcacagcttg
aaacatcataacgacttataattagcaaaaaagtggaagaatctgactct
cacaggaaagttttaagtctcttttgggaattggatgagtgatttttgat
aagaGTTGCAATAAAagtgcttcgaaaaatcatttaatgagggaaggaaa
gtgaacaataatatcattactgcggacatagctagtacacgagaaatcgg
caaaaatctgttacttgtatatccagtgtataataaatcctagGTCGGAG
TATAACGGGCATGGAAATCTCTTCAGGTGGAGTAATCACATGGACACCGA
GAGAGATCAACGAAACTTATAGTTTTACCATAAAAGCAACTGACCCTTGT
GGGAAAAGCGCTGAAGGAAAATTTTCTGTCGAAACTAGAAAATGTTATTG
TGAAGGAAACAATGGAGGATATTGTGAATGGATGATGGGTGGATCGAATT
GTCGTTGCTCTGACGACGGTTGCAAAGCACCTACTTGTGAAGGAGAAAGA
TGAAGAAGAGTCGAGCAATGGAACAATCATTGCGTTTGTTGTTGTCTTGG
TAATCTTCATCCTAATCGCTGCTTGTGGTGTCCTTTATTATCTCCATAAA
CAAGGGGGCAAACTGAATTTACTGATGTTGGGCGAATCGAGCGGTAAACA
AACTACAAACAGAAGCAGATCAAAACATGCGTTACAGCAACGGAAAACTC
GTCCCACAAGCCGTCATGGATTACGAGGAAAAGATGGAGGAACGAAAGAA
TAAAGCTTATGTCGAAGAATAAGGGTCTTGCTTGAGCTCTTGTCTTACAT
TGTTCAatagaacacccccttctcacagacccgatggTATTCTCTCTAAC
tgaaaaaattggtcaaaatatcgcCCCGGGGGAAAACTACacttccaatt
tttttcccgctgaaaaaatcaaagaaaaaattccTCAAAGCAAAGAATTG
TGCTttttttttcatccccactgaattttttgacattCAATTTCAAACTC
GGCGTGTGAGAAGGGTTTTATAGAATTCATTAGAAGCTTTATTATTTTAT
TCTTAGATCTTGACAATATGCTGTTCTCAAGACCTTTTATAGATAAATGC
AATAAAATTGTCATCCTAAGAGTTCATTTGAAATCCTACCTTTTGTCAAA
ACGCAATTAGTGGATTCCCGT Run BLAST on NCBI transcript from alignment at sc0000278:32736..37788- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017866 ID=TCONS_00017866|Name=TCONS_00017866|organism=Clytia hemisphaerica|type=transcript|length=5053bp|location=Sequence derived from alignment at sc0000278:32736..37788- (Clytia hemisphaerica)
TGGTGGCAAGGTGGTGTTTTTGAGGTTGAAGTTTGAAAATTTCGGACCGG
AAATTAATTTCTTATACACAACACGTCTTTTGCATCTTTCTCACAGCTTG
AAACATCATAACGACTTATAATTAGCAAAAAAGTGGAAGAATCTGACTCT
CACAGGAAAGTTTTAAGTCTCTTTTGGGAATTGGATGAGTGATTTTTGAT
AAGAGTTGCAATAAAAGTGCTTCGAAAAATCATTTAATGAGGGAAGGAAA
GTGAACAATAATATCATTACTGCGGACATAGCTAGTACACGAGAAATCGG
CAAAAATCTGTTACTTGTATATCCAGTGTATAATAAATCCTAGGTCGGAG
TATAACGGGCATGGAAATCTCTTCAGGTGGAGTAATCACATGGACACCGA
GAGAGATCAACGAAACTTATAGTTTTACCATAAAAGCAACTGACCCTTGT
GGGAAAAGCGCTGAAGGAAAATTTTCTGTCGAAACTAGAAGTAATGTTCT
CAAATTTGAAATATTAATTTTATTCCATCTTCTCTATTTCTTGACTTAAA
AAATTGATGATTTAGGAGATTAAGTAAGCAATAGTACGGAGATAAAACAC
GAGACTACGTAAGGAGAAACGAAATGGAAAAGACGAGGTTAATACTTTTC
CATAATGTTCTTTCACAGTTGAACCAACCATACGAAAGGATATGTGTCGA
CCTCTACTGCGCTCGTAAGAACAATTAAACTTCTGACTAAAGTCTGTTCA
CGATAAGTGTGCACTCTTTTTTCTTTCACCTATAACTTTTGAAGGAATTC
TTTAATCTTTATAAATTTGGTATCGTTGGAGAGATATNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTCTACAAGATCTTCA
TTTTTTTCTTCTTCATTTTCATCTTCATTTTTATAATTTTTTTAAAGATT
TTTTAATTTCAAATTGTTCCACTCACTAACATCTTTCCAATGATACCAAA
TTTATAAAAATCGAAGAATTCCTTCAAAAGTTATAGGTAAATGAAAAAAG
AGTGCACACTTATCGTGAATAGACTTTAGGTTTCTTTAGTAATGTCTGGA
GATGAAATGTATCTTCCAAAATTCAAAACTAATCTTCATTTTTCATCATT
GTAAATTTTAGAATGTTATTGTGAAGGAAACAATGGAGGATATTGTGAAT
GGATGATGGGTGGATCGAATTGTCGTTGCTCTGACGACGGTTGCAAAGCA
CCTACGTAAGTAAATGTTTTTTCACTTGGCAGTACTCATCCCCGCTTTTC
CCAGACCAACACATAATTTTGTCATTTCCCTTAAATATATTTTAAAGGTG
TCATAAATGTGTCCATTTGGTACAGGCAACACTAGTCATACCATACAGAT
CCATTAACTTTTCTGGATAAAATTTATATTAATTTCACACCCCTGTCTCG
TGTCCTTTTTCAAGAAACGAATATTACACCCCTGTCGCATTGGCACCCTG
TCATAAAGGAATATCCACACTTGTCTGTTATCCCCTTGCGCTTAATCTTT
AGCCTTTGTACTGAAATCTCTATCTTATAAATTTTTAGAGAGTTTGTCCA
AGTATCAATTACTTCATTATAAAAGTCATCTAAATACACTTTATATTTTA
GGGACAAGCTGGAGTTTTTACAAGCTCTTATTTGATTTGGTTGGTCGTTA
ACCAGTAATAAAACAATTTTGTTACTTTTTCTAAAGAACGCGTCGTCTCT
ATCACTTCAAATGACCAATTAGTGAAGTATCTTGTAAAAACTCCAGGTGC
GCACCATAGCAAAGGAAGCTCGCGTTTGAGCAATTAAAGGTATGGCCATT
TTTGAGGCGAAAATCGATTTGAAAGCAATGACCGTACCGGTAGTCGAATA
ATTTTGACTTTTAGAAAAGAGAGAATATTCAAAATTGCAACTATTTGTTA
TAATTTTTTTAAATTCATTTAGAAGTTCACCAGGGATCCCAATGTTTGTG
TGTCCAATGCAATTATTACAGTTGACGCTCTCTTATTCGACATTCGACTT
TTTGATACGCTCCCTTACTAGTATTTCATTTAAAGTCACCGTTAACAAAA
CCTCTCATGAAAGGCGTTCTACCATTCAATACGCTCCAATATTCAATGAA
ATCCTAACCCCCTCAAAAATCGAATTAGAGAGCGTCAACTATATTTCATT
TTCACTTTTTCATTTCGATGTTAGTTGTGAAGGAGAAAGATGAAGAAGAG
TCGAGCAATGGAACAATCATTGCGTTTGTTGTTGTCTTGGTAATCTTCAT
CCTAATCGCTGCTTGTGGTGTCCTTTATTATCTCCATAAACAAGGGGGTA
AGTTGTCCATTATCTCCCTAAGGAAGACATTTTATCTATTATCTCCTTAA
GGAAGTCACTTTGTCAATTTTTACTATAAACGAGAAATTTAACTTATATA
ATCTCCTTGTTGAAGGTAATGCTTTCTGTTATCTCTATAAGAAATTTTGA
TTGTTTTTGTTCGACCTAAACCACGGCTATTTCAATGCTCATCTTCTTTT
GGTTTCCGTGGAGAACTTTTGTCTGTTTTGTTATTTTATTCATGATATGC
ATCATAATTGCAATGTTTTCTGACATTACATCACGGACCCAACAGATGAT
TGGTTGTAAGTGACGTAAAATCAGCCAATACGTCACTTACAACCAATCAG
CTGTTGGGTTCGTGGAAGATGCATTGCAATGGTGCATATCATGAATTAGC
AAGTCTAAACCGCGCTGTCTATCATTCTTTCTTACTCGGGCTCTTGTTGA
ATCTATAAGTTCCGTCTGGAATCACTCTTAACAATACTACCGTTAACAAT
TCACTCATCCTCTAACCCCATATCTCTGCTCTAACTCAGGCAAACTGAAT
TTACTGATGTTGGGCGAATCGAGCGGTAAACAAACTACAAACAGAAGCAG
ATCAAAACATGCGTTACAGCAACGGAAAACTCGTCCCACAAGCCGTCATG
GATTACGAGGAAAAGATGGAGGAACGAAAGAATAAAGCTTATGTCGAAGA
ATAAGGGTCTTGCTTGAGCTCTTGTCTTACATTGTTCAATAGAACACCCC
CTTCTCACAGACCCGATGGTATTCTCTCTAACTGAAAAAATTGGTCAAAA
TATCGCCCCGGGGGAAAACTACACTTCCAATTTTTTTCCCGCTGAAAAAA
TCAAAGAAAAAATTCCTCAAAGCAAAGAATTGTGCTTTTTTTTTCATCCC
CACTGAATTTTTTGACATTCAATTTCAAACTCGGCGTGTGAGAAGGGTTT
TATAGAATTCATTAGAAGCTTTATTATTTTATTCTTAGATCTTGACAATA
TGCTGTTCTCAAGACCTTTTATAGATAAATGCAATAAAATTGTCATCCTA
AGAGTTCATTTGAAATCCTACCTTTTGTCAAAACGCAATTAGTGGATTCC
CGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017866-exon-sc0000278-1575043694:37299..37788 | TCONS_00017866-exon-sc0000278-1575043694:37299..37788 | Clytia hemisphaerica | exon |
| TCONS_00017866-exon-sc0000278-1575043694:34934..35027 | TCONS_00017866-exon-sc0000278-1575043694:34934..35027 | Clytia hemisphaerica | exon |
| TCONS_00017866-exon-sc0000278-1575043694:33842..33964 | TCONS_00017866-exon-sc0000278-1575043694:33842..33964 | Clytia hemisphaerica | exon |
| TCONS_00017866-exon-sc0000278-1575043694:32736..33299 | TCONS_00017866-exon-sc0000278-1575043694:32736..33299 | Clytia hemisphaerica | exon |
| TCONS_00017866-exon-sc0000278-1510915933:37299..37788 | TCONS_00017866-exon-sc0000278-1510915933:37299..37788 | Clytia hemisphaerica | exon |
| TCONS_00017866-exon-sc0000278-1510915933:34934..35027 | TCONS_00017866-exon-sc0000278-1510915933:34934..35027 | Clytia hemisphaerica | exon |
| TCONS_00017866-exon-sc0000278-1510915933:33842..33964 | TCONS_00017866-exon-sc0000278-1510915933:33842..33964 | Clytia hemisphaerica | exon |
| TCONS_00017866-exon-sc0000278-1510915933:32736..33299 | TCONS_00017866-exon-sc0000278-1510915933:32736..33299 | Clytia hemisphaerica | exon |
| TCONS_00017866-exon-sc0000278-1491911889:37299..37788 | TCONS_00017866-exon-sc0000278-1491911889:37299..37788 | Clytia hemisphaerica | exon |
| TCONS_00017866-exon-sc0000278-1491911889:34934..35027 | TCONS_00017866-exon-sc0000278-1491911889:34934..35027 | Clytia hemisphaerica | exon |
| TCONS_00017866-exon-sc0000278-1491911889:33842..33964 | TCONS_00017866-exon-sc0000278-1491911889:33842..33964 | Clytia hemisphaerica | exon |
| TCONS_00017866-exon-sc0000278-1491911889:32736..33299 | TCONS_00017866-exon-sc0000278-1491911889:32736..33299 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000278 | supercontig | sc0000278:32736..37788 - |
Blast
The following BLAST results are available for this feature:
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