TCONS_00017865 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017865
Unique NameTCONS_00017865
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2491

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017865 ID=TCONS_00017865|Name=TCONS_00017865|organism=Clytia hemisphaerica|type=transcript|length=2491bp
TTTccatgaaattactttcgaggAAAGTTATTTTTAAATGATGAGGGAAT
ACCAGCAGGGAAAATGATGACCGACAAATCATTATTACAATTTACATATT
ACTAATGTGTTATTAGATAAGCTTATTCCTTCTGATCCAACTAAGATGAA
AGAGTCCCTTTGTTTTATGAGACCTATAAATATGAGGTAATTGTTCcaaa
tttcatatttattttcatcACTTGATAAGAAAACAAGGTGGAAGTTGACA
ATTGAAGAATTTAAAAGttggtgaaaatttgaaatggagAAAGAAACAAT
TTCAGTGATCGGTACCGGTAATTTTGGAAGAGCGCTTTGTCATGTTCTCC
TGAACGCTGATTATGAAGTGAAACTCGGCAGTCGGTATCCTGAACGGCGA
TTAGAAGCAACATATGATCCTAAACTAAAACAACCAAAGGAAGTCGTCAG
CATCAAAGACGCGATAGCTGCATCGAATATCGTTTTCTTGGCGATTCACC
CCGACGCTCAGAAGGAATTTTGTGATAATTATGGAGCACTGTTGACAGGA
AAGATTATTGTCGATGTAGCTAACCCTGACCATATCAGAGAAAAATCGAA
CGCTGAGATATTGCAGGAAAGATTGATCAATAGCAGTGTTGTGAAAGCAT
TCAACACTGTATCAGCGTATGGTCTCACATCAGATGAAATCTCAGATGTC
AGATTGTTGGTTCATGTTGCTTCAAACACCATGAAAGCAAAACAGGAGAT
CACTGAGATTATTCACCGGCTTGGCTTCACACCACTCAATGCTGGTCTTT
TGCAATCAGCACGTAAGTTGGAATCAAAAGCTGGAAAATTATTCCATGGC
TGGGGTAGACCTTGCATTAtctcttttgtgatttttgcaGTATGGTTTAT
TTACGGAACAATCCGATTCCAACATATCAATGAATACGCTTGGAGTAGAT
TACCGGTCAATGTGATGAATAAGATCATCGGAAGTACCTCCATCACACTA
CTTTGCTGTTGCTATCTTCCTGGATCATTTGCTTCTTTCTTGCAGCTCTA
CTATGGAACAAAACATCGCCGTTTTGCCAGTTGGTTAGATAGCTGGATGA
AGATGCGAAAACAGCTTGGTCTCTTAGCTCTATGGACTGCAGTGGTGCAT
GGTTTCTTCTCTATCGTTCTTCTACAGCCAGGTTATTATAAAAATTGGTT
TGATGAAAGTGTTGTGAAAATTCCACCTCATCTCAACCATACATTTGTTG
TCAATGTTGCTCCAAGGATGAATTGGATTGGTGAAGGAGCTGTTTTCTTT
GGCGTCATTGCACTTGGCTTGATGGCTATTCTCGGAATCTCATCATTACC
ATCTGTTGGATCAATCATGAATTGGCGACAATGGGTGTTTGTTCAATCAC
AACTTGGATATATTTGTCTATTCATCTCCACCGTTCATCTTGCTTTCAAA
GCTTGTCCTTCATGGCCCAAAAATCCGTTCTACATAACGGTACAAAAGTT
GAGTTTCCTCAGCATACCTTTACCATTGTTCACTTTACTTCTTCGTTTGG
TGCTCCTGATTCCTTGCGTCAACAATCAACTCCAAAAGATACGACATGGT
GTAGAACGTGGTAATCGAGAAGACCAACAACAAATGGTGGTTGAGAAaga
gaaaacaatgaaatttgaTAACAATGGATTTTCAATGGCTTAGTTGAAAT
TAAAACATACTTTAAACATCAAGTGTTTCCTTAGTGGAAATTTGAATGAT
AATTTTGCGATcgtttttacaaaaacaatTTGGGTTAATAATAAATTAAT
TTCCTGTGTTCGTCTGCTGGTAGCATTATATCGTGCCCTTCGAAGAAATT
ACGCGAAAAAACATCAACTGCACGAAAGAGTTTTTCTTGGAATACCCGTT
CATGGTTATTTGCCCCAGCTCAAGTGAAACACACAAGGGTAAGTTAGATT
GTATAGTTACAaatgaagcaaaaaaaattcatgatattttgtcaGTAGTT
GTAAAACCGTAAATAGTATATGTATATAAAAATCGATTTTgctagtacat
ttttatttttattgacttgcagcagactgccaaattttcaaaattagggT
AATTTTTACGAAGTtctgagaattttatgttcaattttcctTTGAATTCG
AGCCTTTTGtgcctttttattttcttcttcaaatatttgtcatgatgtag
tagtttttgctgtgACGAATGCGGTTTTTAGAAGATTTTATTGGTGAAAT
actagttttatttttattttttctccgAGCGACCCTCTTATTTGGGtagc
ccgtaaaacaacaaattaaatttgccTTGCCTATGTAActaatttttagt
tttgttacttgaataattttttgtattttagtgATAATTATTCCTCAATC
TCCCATTTTCTCTGTTTCGATTTGTGGTGCTGTTATACCCGTCATCTTGC
AAACTACTATTATAGTAGCCCGGGCTATACTAGGAAAAGGT
Run BLAST on NCBI

protein sequence of TCONS_00017865-protein

>TCONS_00017865-protein ID=TCONS_00017865-protein|Name=TCONS_00017865-protein|organism=Clytia hemisphaerica|type=polypeptide|length=469bp
MEKETISVIGTGNFGRALCHVLLNADYEVKLGSRYPERRLEATYDPKLKQ
PKEVVSIKDAIAASNIVFLAIHPDAQKEFCDNYGALLTGKIIVDVANPDH
IREKSNAEILQERLINSSVVKAFNTVSAYGLTSDEISDVRLLVHVASNTM
KAKQEITEIIHRLGFTPLNAGLLQSARKLESKAGKLFHGWGRPCIISFVI
FAVWFIYGTIRFQHINEYAWSRLPVNVMNKIIGSTSITLLCCCYLPGSFA
SFLQLYYGTKHRRFASWLDSWMKMRKQLGLLALWTAVVHGFFSIVLLQPG
YYKNWFDESVVKIPPHLNHTFVVNVAPRMNWIGEGAVFFGVIALGLMAIL
GISSLPSVGSIMNWRQWVFVQSQLGYICLFISTVHLAFKACPSWPKNPFY
ITVQKLSFLSIPLPLFTLLLRLVLLIPCVNNQLQKIRHGVERGNREDQQQ
MVVEKEKTMKFDNNGFSMA
Run BLAST on NCBI

transcript from alignment at sc0000278:2027..5784-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017865 ID=TCONS_00017865|Name=TCONS_00017865|organism=Clytia hemisphaerica|type=transcript|length=3758bp|location=Sequence derived from alignment at sc0000278:2027..5784- (Clytia hemisphaerica)
TTTCCATGAAATTACTTTCGAGGAAAGTTATTTTTAAATGATGAGGGAAT ACCAGCAGGGAAAATGATGACCGACAAATCATTATTACAATTTACATATT ACTAATGTGTTATTAGATAAGCTTATTCCTTCTGATCCAACTAAGATGAA AGAGTCCCTTTGTTTTATGAGACCTATAAATATGAGGTAATTGTTCCAAA TTTCATATTTATTTTCATCACTTGATAAGAAAACAAGGTGGAAGTTGACA ATTGAAGAATTTAAAAGGTATGTCGTATTCATTTTCACACCCCTGTCTCG TAGCCACAATGGAACTTTCCTCAGAGGGGATAAAAAAACTCCTATATTGA AATCCTAATGGGGATAGAAATTCTATTGTTCCAAGGTTAAAAAACCCAGT TGTGGAGTGCAATCTCTAAACATGGAATTTCGAGTGAGGATGAAATAAAA GTCAATTTCATAGTGGGGCTGAAATTCAAGGGTATTTTCCCATCGGGGAA GAAATTTTTGCTTAATCTTCCAGTGGGGCTTGGGTCCCAATGGGTCTGTT AAACAGGGTGTATTTTCATTTCTTGCATGATCGAACATATCTCGGAAAAT ATCTCACGGTAGGAGGTCCTCGAATATTATCGCTGGGACCCCTGCCCTAC TGGAATATTTACCCAAATCTCGTCCACGATAAGGAAAATACCCTGGAATT TCTTCCCAACTTGAAAATTGACTGTATATTCATCCCCATTTGAAATTCAA TGGACAAAATAATGTTTTCCGAAATCATTCTACTGAATCCTTTTAGCTGA GAACAATACAATTTTTTCCCTGTTGGGATCGCAAAAGAAACCTTCATCGC CACTGTGGGAAATAATCCATCGGGGGCGTTGAGACAGGGGTGTCTAGAAG GTCTGCTAATCTGGGCATACTCACTTAAGAGGCCATGATCTTTTAGATAG AGTGAATACTTGCCATACGGAGTAAACAATGCTCTTAAAAATTTGCTCGG TGATTACCACACCCCTCCGTCACAGACGCGTTGGGACCCTAGCCCCCTGG AATTTCAGCTCCACTGGAAAATTGACTTTTTTTCATCCCCACTCGAAAAT CGATGTTTAAAATTTGCCCTCCAAAACCATCCCCACTGGATTTTTTAACT ATTGAACAATAGAATTTCTATTCCCATTGGGATTTCAATGGGAATTTTTA TCCCCATTGAGGCAAAAAGTTCGACCAGGGCTGTGAGACAGGGGTGTATT ACCCTACTGGGTACATTTAACAGGTGCTACAATATCTTCTGTATTTTTTT AGTTGGTGAAAATTTGAAATGGAGAAAGAAACAATTTCAGTGATCGGTAC CGGTAATTTTGGAAGAGCGCTTTGTCATGTTCTCCTGAACGCTGATTATG AAGTGAAACTCGGCAGTCGGTATCCTGAACGGCGATTAGAAGCAACATAT GATCCTAAACTAAAACAACCAAAGGAAGTCGTCAGCATCAAAGACGCGAT AGCTGCATCGAATATCGTTTTCTTGGCGATTCACCCCGACGCTCAGAAGG AATTTTGTGATAATTATGGAGCACTGTTGACAGGAAAGATTATTGTCGAT GTAGCTAACCCTGACCATATCAGAGAAGTAAGCTGTATAAAACTTTAATC ACATAACATCAAAATTATCAATTATTATTGAAGCCTTAAAAATAACCTTA ACTATTTATTTTGCGGGTCACCATTCTAAATCGTGAAAAAGTAAACGAAC GAAAAGCAAAAAAATAATTAATAACCCGTGTATAAATCTCGCTAAACTTT CATGTGACTAATAAAGTCAAGGTTAAAAACGAAACAATTCTTTCTACTGT CATTCTTAGAAATCGAACGCTGAGATATTGCAGGAAAGATTGATCAATAG CAGTGTTGTGAAAGCATTCAACACTGTATCAGCGTATGGTCTCACATCAG ATGAAATCTCAGATGTCAGATTGTTGGTTCATGTTGCTTCAAACACCATG AAAGCAAAACAGGAGATCACTGAGATTATTCACCGGCTTGGCTTCACACC ACTCAATGCTGGTCTTTTGCAATCAGCACGTAAGTTGGAATCAAAAGCTG GAAAATTATTCCATGGCTGGGGTAGACCTTGCATTATCTCTTTTGTGATT TTTGCAGTATGGTTTATTTACGGAACAATCCGATTCCAACATATCAATGA ATACGCTTGGAGTAGATTACCGGTCAATGTGATGAATAAGATCATCGGAA GTACCTCCATCACACTACTTTGCTGTTGCTATCTTCCTGGATCATTTGCT TCTTTCTTGCAGCTCTACTATGGAACAAAACATCGCCGTTTTGCCAGTTG GTTAGATAGCTGGATGAAGATGCGAAAACAGCTTGGTCTCTTAGCTCTAT GGACTGCAGTGGTGCATGGTTTCTTCTCTATCGTTCTTCTACAGCCAGGT TATTATAAAAATTGGTTTGATGAAAGTGTTGTGAAAATTCCACCTCATCT CAACCATACATTTGTTGTCAATGTTGCTCCAAGGATGAATTGGATTGGTG AAGGAGCTGTTTTCTTTGGCGTCATTGCACTTGGCTTGATGGCTATTCTC GGAATCTCATCATTACCATCTGTTGGATCAATCATGAATTGGCGACAATG GGTGTTTGTTCAATCACAACTTGGATATATTTGTCTATTCATCTCCACCG TTCATCTTGCTTTCAAAGCTTGTCCTTCATGGCCCAAAAATCCGTTCTAC ATAACGGTACAAAAGTTGAGTTTCCTCAGCATACCTTTACCATTGTTCAC TTTACTTCTTCGTTTGGTGCTCCTGATTCCTTGCGTCAACAATCAACTCC AAAAGATACGACATGGTGTAGAACGTGGTAATCGAGAAGACCAACAACAA ATGGTGGTTGAGAAAGAGAAAACAATGAAATTTGATAACAATGGATTTTC AATGGCTTAGTTGAAATTAAAACATACTTTAAACATCAAGTGTTTCCTTA GTGGAAATTTGAATGATAATTTTGCGATCGTTTTTACAAAAACAATTTGG GTTAATAATAAATTAATTTCCTGTGTTCGTCTGCTGGTAGCATTATATCG TGCCCTTCGAAGAAATTACGCGAAAAAACATCAACTGCACGAAAGAGTTT TTCTTGGAATACCCGTTCATGGTTATTTGCCCCAGCTCAAGTGAAACACA CAAGGGTAAGTTAGATTGTATAGTTACAAATGAAGCAAAAAAAATTCATG ATATTTTGTCAGTAGTTGTAAAACCGTAAATAGTATATGTATATAAAAAT CGATTTTGCTAGTACATTTTTATTTTTATTGACTTGCAGCAGACTGCCAA ATTTTCAAAATTAGGGTAATTTTTACGAAGTTCTGAGAATTTTATGTTCA ATTTTCCTTTGAATTCGAGCCTTTTGTGCCTTTTTATTTTCTTCTTCAAA TATTTGTCATGATGTAGTAGTTTTTGCTGTGACGAATGCGGTTTTTAGAA GATTTTATTGGTGAAATACTAGTTTTATTTTTATTTTTTCTCCGAGCGAC CCTCTTATTTGGGTAGCCCGTAAAACAACAAATTAAATTTGCCTTGCCTA TGTAACTAATTTTTAGTTTTGTTACTTGAATAATTTTTTGTATTTTAGTG ATAATTATTCCTCAATCTCCCATTTTCTCTGTTTCGATTTGTGGTGCTGT TATACCCGTCATCTTGCAAACTACTATTATAGTAGCCCGGGCTATACTAG GAAAAGGT

Coding sequence (CDS) from alignment at sc0000278:2027..5784-

>TCONS_00017865 ID=TCONS_00017865|Name=TCONS_00017865|organism=Clytia hemisphaerica|type=CDS|length=2820bp|location=Sequence derived from alignment at sc0000278:2027..5784- (Clytia hemisphaerica)
AAATCGAACGCTGAGATATTGCAGGAAAGATTGATCAATAGCAGTGTTGT
GAAAGCATTCAACACTGTATCAGCGTATGGTCTCACATCAGATGAAATCT
CAGATGTCAGATTGTTGGTTCATGTTGCTTCAAACACCATGAAAGCAAAA
CAGGAGATCACTGAGATTATTCACCGGCTTGGCTTCACACCACTCAATGC
TGGTCTTTTGCAATCAGCACGTAAGTTGGAATCAAAAGCTGGAAAATTAT
TCCATGGCTGGGGTAGACCTTGCATTATCTCTTTTGTGATTTTTGCAGTA
TGGTTTATTTACGGAACAATCCGATTCCAACATATCAATGAATACGCTTG
GAGTAGATTACCGGTCAATGTGATGAATAAGATCATCGGAAGTACCTCCA
TCACACTACTTTGCTGTTGCTATCTTCCTGGATCATTTGCTTCTTTCTTG
CAGCTCTACTATGGAACAAAACATCGCCGTTTTGCCAGTTGGTTAGATAG
CTGGATGAAGATGCGAAAACAGCTTGGTCTCTTAGCTCTATGGACTGCAG
TGGTGCATGGTTTCTTCTCTATCGTTCTTCTACAGCCAGGTTATTATAAA
AATTGGTTTGATGAAAGTGTTGTGAAAATTCCACCTCATCTCAACCATAC
ATTTGTTGTCAATGTTGCTCCAAGGATGAATTGGATTGGTGAAGGAGCTG
TTTTCTTTGGCGTCATTGCACTTGGCTTGATGGCTATTCTCGGAATCTCA
TCATTACCATCTGTTGGATCAATCATGAATTGGCGACAATGGGTGTTTGT
TCAATCACAACTTGGATATATTTGTCTATTCATCTCCACCGTTCATCTTG
CTTTCAAAGCTTGTCCTTCATGGCCCAAAAATCCGTTCTACATAACGGTA
CAAAAGTTGAGTTTCCTCAGCATACCTTTACCATTGTTCACTTTACTTCT
TCGTTTGGTGCTCCTGATTCCTTGCGTCAACAATCAACTCCAAAAGATAC
GACATGGTGTAGAACGTGGTAATCGAGAAGACCAACAACAAATGGTGGTT
GAGAAAGAGAAAACAATGAAATTTGATAACAATGGATTTTCAATGGCTTA
GATGGAGAAAGAAACAATTTCAGTGATCGGTACCGGTAATTTTGGAAGAG
CGCTTTGTCATGTTCTCCTGAACGCTGATTATGAAGTGAAACTCGGCAGT
CGGTATCCTGAACGGCGATTAGAAGCAACATATGATCCTAAACTAAAACA
ACCAAAGGAAGTCGTCAGCATCAAAGACGCGATAGCTGCATCGAATATCG
TTTTCTTGGCGATTCACCCCGACGCTCAGAAGGAATTTTGTGATAATTAT
GGAGCACTGTTGACAGGAAAGATTATTGTCGATGTAGCTAACCCTGACCA
TATCAGAGAAAAATCGAACGCTGAGATATTGCAGGAAAGATTGATCAATA
GCAGTGTTGTGAAAGCATTCAACACTGTATCAGCGTATGGTCTCACATCA
GATGAAATCTCAGATGTCAGATTGTTGGTTCATGTTGCTTCAAACACCAT
GAAAGCAAAACAGGAGATCACTGAGATTATTCACCGGCTTGGCTTCACAC
CACTCAATGCTGGTCTTTTGCAATCAGCACGTAAGTTGGAATCAAAAGCT
GGAAAATTATTCCATGGCTGGGGTAGACCTTGCATTATCTCTTTTGTGAT
TTTTGCAGTATGGTTTATTTACGGAACAATCCGATTCCAACATATCAATG
AATACGCTTGGAGTAGATTACCGGTCAATGTGATGAATAAGATCATCGGA
AGTACCTCCATCACACTACTTTGCTGTTGCTATCTTCCTGGATCATTTGC
TTCTTTCTTGCAGCTCTACTATGGAACAAAACATCGCCGTTTTGCCAGTT
GGTTAGATAGCTGGATGAAGATGCGAAAACAGCTTGGTCTCTTAGCTCTA
TGGACTGCAGTGGTGCATGGTTTCTTCTCTATCGTTCTTCTACAGCCAGG
TTATTATAAAAATTGGTTTGATGAAAGTGTTGTGAAAATTCCACCTCATC
TCAACCATACATTTGTTGTCAATGTTGCTCCAAGGATGAATTGGATTGGT
GAAGGAGCTGTTTTCTTTGGCGTCATTGCACTTGGCTTGATGGCTATTCT
CGGAATCTCATCATTACCATCTGTTGGATCAATCATGAATTGGCGACAAT
GGGTGTTTGTTCAATCACAACTTGGATATATTTGTCTATTCATCTCCACC
GTTCATCTTGCTTTCAAAGCTTGTCCTTCATGGCCCAAAAATCCGTTCTA
CATAACGGTACAAAAGTTGAGTTTCCTCAGCATACCTTTACCATTGTTCA
CTTTACTTCTTCGTTTGGTGCTCCTGATTCCTTGCGTCAACAATCAACTC
CAAAAGATACGACATGGTGTAGAACGTGGTAATCGAGAAGACCAACAACA
AATGGTGGTTGAGAAAGAGAAAACAATGAAATTTGATAACAATGGATTTT
CAATGGCTTAGATGGAGAAAGAAACAATTTCAGTGATCGGTACCGGTAAT
TTTGGAAGAGCGCTTTGTCATGTTCTCCTGAACGCTGATTATGAAGTGAA
ACTCGGCAGTCGGTATCCTGAACGGCGATTAGAAGCAACATATGATCCTA
AACTAAAACAACCAAAGGAAGTCGTCAGCATCAAAGACGCGATAGCTGCA
TCGAATATCGTTTTCTTGGCGATTCACCCCGACGCTCAGAAGGAATTTTG
TGATAATTATGGAGCACTGTTGACAGGAAAGATTATTGTCGATGTAGCTA
ACCCTGACCATATCAGAGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010010XLOC_010010Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017865-proteinTCONS_00017865-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017865-exon-sc0000278-1575043694:5518..5784TCONS_00017865-exon-sc0000278-1575043694:5518..5784Clytia hemisphaericaexon
TCONS_00017865-exon-sc0000278-1575043694:4158..4482TCONS_00017865-exon-sc0000278-1575043694:4158..4482Clytia hemisphaericaexon
TCONS_00017865-exon-sc0000278-1575043694:2027..3925TCONS_00017865-exon-sc0000278-1575043694:2027..3925Clytia hemisphaericaexon
TCONS_00017865-exon-sc0000278-1510915933:5518..5784TCONS_00017865-exon-sc0000278-1510915933:5518..5784Clytia hemisphaericaexon
TCONS_00017865-exon-sc0000278-1510915933:4158..4482TCONS_00017865-exon-sc0000278-1510915933:4158..4482Clytia hemisphaericaexon
TCONS_00017865-exon-sc0000278-1510915933:2027..3925TCONS_00017865-exon-sc0000278-1510915933:2027..3925Clytia hemisphaericaexon
TCONS_00017865-exon-sc0000278-1491911889:5518..5784TCONS_00017865-exon-sc0000278-1491911889:5518..5784Clytia hemisphaericaexon
TCONS_00017865-exon-sc0000278-1491911889:4158..4482TCONS_00017865-exon-sc0000278-1491911889:4158..4482Clytia hemisphaericaexon
TCONS_00017865-exon-sc0000278-1491911889:2027..3925TCONS_00017865-exon-sc0000278-1491911889:2027..3925Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000278supercontigsc0000278:2027..5784 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0310936 0.0303211 0.0528086 0 0.0209657 0.0497021 0.479708 0.39296 2.22716 4.80339 0.393774 1.18036 104.813 70.7302 0.662098 3.2874 0.373469 2.93076 74.7001 164.638 0.285599 0.263946 57.4163 44.9071 609.421 317.696 119.699 130.18 2.58836 1.03727
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR028939P5C_Rdtase_cat_N
IPR013130Fe3_Rdtase_TM_dom
IPR016040NAD(P)-bd_dom
Blast
BLAST of TCONS_00017865 vs. Swiss-Prot (Human)
Match: STEA4 (Metalloreductase STEAP4 OS=Homo sapiens GN=STEAP4 PE=1 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 5.355e-72
Identity = 165/456 (36.18%), Postives = 251/456 (55.04%), Query Frame = 2
Query:  287 EKETISVIGTGNFGRALCHVLLNADYEVKLGSRYPERRLEATYDPKLKQPKEVVSIKDAIAASNIVFLAIHPDAQKEFCDNYGALLTGKIIVDVANPDHIRE--KSNAEILQERLINSSVVKAFNTVSAYGLTSDEISDVRLLVHVASNTMKAKQEITEIIHRLGFTPLNAGLLQSARKLESKAGKLFHGWGRPCIISFVIFAVWFIYGTIRFQHINEYAWS------RLPVNVMNKIIGSTSITLLCCCYLPGSFASFLQLYYGTKHRRFASWLDSWMKMRKQLGLLALWTAVVHGFFSIVLLQPGYYKNWF--DESVVKIPPHLNHTFVVNVAPRMNWIGEGAVFFGVIALGLMAILGISSLPSVGSIMNWRQWVFVQSQLGYICLFISTVH-LAFKACPSWPKNPFYITVQKXXXXXXXXXXXXXXXXXXXXXPCVNNQLQKIRHGVERGNRE 1621
            ++ET+ + GTG+FGR+L   +L   Y V  GSR P++         L    EV+S  +A   S I+ +AIH +   +F      +L GKI+VD++N   I +  +SNAE L   +  + VVKAFNT+SA+ L S  + D    V V  N  KAKQ + +I+  LG TP++ G L +A+++E    +LF  W  P  +S V+    F Y  IR   I  Y +       R+ +++ N+I   T++TLL   YLPG  A+ LQLY GTK+RRF  WLD WM  RKQLGL+AL  A +H  +++V +   YY  W   + +V +      + F  + A    W+ +  V  G++   L  +LGI+SLPSV + +NWR++ FVQS+LGY+ L + T H L +        +     +     L + +P   L+++ VL++PCV+N L +IR G ER ++ 
Sbjct:   18 KQETVCIFGTGDFGRSLGLKMLQCGYSVVFGSRNPQK------TTLLPSGAEVLSYSEAAKKSGIIIIAIHRE-HYDFLTELTEVLNGKILVDISNNLKINQYPESNAEYLAHLVPGAHVVKAFNTISAWALQSGAL-DASRQVFVCGNDSKAKQRVMDIVRNLGLTPMDQGSLMAAKEIEKYPLQLFPMWRFPFYLSAVLCVFLFFYCVIR-DVIYPYVYEKKDNTFRMAISIPNRIFPITALTLLALVYLPGVIAAILQLYRGTKYRRFPDWLDHWMLCRKQLGLVALGFAFLHVLYTLV-IPIRYYVRWRLGNLTVTQAILKKENPFSTSSA----WLSDSYVALGILGFFLFVLLGITSLPSVSNAVNWREFRFVQSKLGYLTLILCTAHTLVYGGKRFLSPSNLRWYLPAAYVLGLIIPCTVLVIKFVLIMPCVDNTLTRIRQGWERNSKH 459          
The following BLAST results are available for this feature:
BLAST of TCONS_00017865 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
STEA45.355e-7236.18Metalloreductase STEAP4 OS=Homo sapiens GN=STEAP4 ... [more]
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