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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017789 ID=TCONS_00017789|Name=TCONS_00017789|organism=Clytia hemisphaerica|type=transcript|length=967bp
TTAGCTACATACTTGCATTTGAGAGTGCACGAGAGATCAAAGAACATTTT
GCCAATTTGCTACCAATGGATAGCCCTGAAGCTCAAGCTTTTTATAAAGA
ATTCACAAAACGTTGGAAACCAATTAGCAGCAGTGGAACAGTAATGCAAA
AGAAACATGATTATTTGGACGATTTTATGAAGCCAAAGAAAGATaaaagg
aaagaaaaaaaacaagatcCAACAATGATAAAAGATACACAACTTCCTCA
AACGtatgaaaataacaacaaagaaAACAATATCTTGATGGAGGATGCAG
AAAATCTCTATCCTTCTGTTATGTCTGTTGATGTGACGGGAGCAGAATTT
TTGGATAAAAACAAACCGATGATTGGAGAAATTAAAATGAAGAGTTGTTC
TCCCTTCAAGAAGAAGAATTTAAAATTCATCCCACTCTTTGGAGCAGATG
GTAAAATGAAGACAGATACGGTCACATTACCAGGGCGACATCCATGTCAA
TGTTTAGCACAAAAACATAAACTGATCAATAACTGTCATTCGTGCGGCAG
GATTGTTTGTGAGCAAGAGGGAGCAGGTTAGGTTGCCTTTTCTTCTATTT
ATTTAGTGCTATAAACACTTCACAATATGTTGTCATGCAATATGTTGAcg
atatattgctgagtgcctgcaatatattgaaaatgtgtCCACAATTATTA
TTGTCAGCCGGAATTGCAATATTCCACCAATATAGGGGGAttatttacag
aaagaaaattccttttcatAATAGAGTACCTGTTATAAATATTGtttgtc
aatatattgtgtagtctaagtagccctttatTGGTTTACATTGATATAAA
TTTGCATTCAAAtattaaatgaaaaacaaaaaaagcttttgttggaccta
cctccgggtaccccggtggaggtcctatgaattaaccgttgtctgttcgt
ccgttcgtctgtccgtt Run BLAST on NCBI transcript from alignment at sc0000276:33949..35824- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017789 ID=TCONS_00017789|Name=TCONS_00017789|organism=Clytia hemisphaerica|type=transcript|length=1876bp|location=Sequence derived from alignment at sc0000276:33949..35824- (Clytia hemisphaerica)
TTAGCTACATACTTGCATTTGAGAGTGCACGAGAGATCAAAGAACATTTT
GCCAATTTGCTACCAATGGATAGCCCTGAAGCTCAAGCTTTTTATAAAGA
ATTCACAAAACGTTGGAAACCAATTAGCAGCAGTGGAACAGTAATGCAAA
AGAAACATGATTATTTGGACGATTTTATGAAGCCAAAGAAAGATGTGAGT
TATGTTTAGAGATTGCTAACTTTTTATCTTGTGTCCGTTTTGATATAAGA
GTAGAGCTAATGGAAACCGTTGGTTTATGTGGCCAATTGATATTAACTTT
AAAGAGGAGAGGCAAGGCAGAGGTCGACCATCTTAAGTAGGGCTTATTTT
TCATCATTCGTTACTGCTTTAAGTTGCTAATTAACAAATTTTGTAATGTT
TTTTATGGTTGTATTTTTATTAGAAATTTGAGGAAAGCAATTACCAATCA
AGAATTAAACCTACATCATATTATAAGATATTATAATAATAAAACTATAG
TTTAAAATAATTTTTGCACGTACATTTTTTCTAGAAAAGGAAAGAAAAAA
AACAAGATCCAACAATGATAAAAGATACACAACTTCCTCAAACGTATGAA
AATAACAACAAAGAAAACAATATCTTGATGGAGGATGCAGAAAATCTCTA
TCCTTCTGTTATGTCTGTTGATGTGACGGGAGCAGAATTTTTGGATAAAA
ACAAACCGATGATTGGAGAAATTAAAATGAAGGTAATACAAAAATGCTAT
TGATGATATAGCTCCTCTTTGTATAGTGATTAGTAATAGTTTGAGTGCAA
TGACCCTGGAAAAGGATCCCAGAGTTAACATAAAAGATACTATTTCATCA
GGAGACCTAATCCTAAATTCAAATTCTTGTTTGTATATTGCTTTTATAGT
AAACGCTTCAGGTCGAGTTATTGTATCAAAATCAAAAACGTATCTGTTGG
AGTAGGATAACAACAACACCCCTTCTCACAGACCCACTGGGAACCCTTCC
CACTGGAAAAATTGGCCAAATTATCATCCCTAGTGGAAAATTGTACTCTA
ATTTTTGTCCCAACTGAAAATAAATCCGATAAGAAGCAAATCCTCACTGC
AAAATATTGAGCTATTTTTTCCATCCCCACTGAATTTTCTGGCTCGAAAT
CAATGTATTTCAAATCCCCAGTCGTAAAAAAAACATGGGAAAATCAATCC
CCATGGATTTTTGGTCCGTCATTGTTACCCCTATTGGCTGGAAAACACCT
GTGAGAAGGGGTGTATAACACTGAAGATAATTATTACATTTTCCACAATA
GAGTTGTTCTCCCTTCAAGAAGAAGAATTTAAAATTCATCCCACTCTTTG
GAGCAGATGGTAAAATGAAGACAGATACGGTCACATTACCAGGGCGACAT
CCATGTCAATGTTTAGCACAAAAACATAAACTGATCAATAACTGTCATTC
GTGCGGCAGGATTGTTTGTGAGCAAGAGGGAGCAGGTTAGGTTGCCTTTT
CTTCTATTTATTTAGTGCTATAAACACTTCACAATATGTTGTCATGCAAT
ATGTTGACGATATATTGCTGAGTGCCTGCAATATATTGAAAATGTGTCCA
CAATTATTATTGTCAGCCGGAATTGCAATATTCCACCAATATAGGGGGAT
TATTTACAGAAAGAAAATTCCTTTTCATAATAGAGTACCTGTTATAAATA
TTGTTTGTCAATATATTGTGTAGTCTAAGTAGCCCTTTATTGGTTTACAT
TGATATAAATTTGCATTCAAATATTAAATGAAAAACAAAAAAAGCTTTTG
TTGGACCTACCTCCGGGTACCCCGGTGGAGGTCCTATGAATTAACCGTTG
TCTGTTCGTCCGTTCGTCTGTCCGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017789-exon-sc0000276-1575043694:35631..35824 | TCONS_00017789-exon-sc0000276-1575043694:35631..35824 | Clytia hemisphaerica | exon |
| TCONS_00017789-exon-sc0000276-1575043694:35093..35290 | TCONS_00017789-exon-sc0000276-1575043694:35093..35290 | Clytia hemisphaerica | exon |
| TCONS_00017789-exon-sc0000276-1575043694:33949..34523 | TCONS_00017789-exon-sc0000276-1575043694:33949..34523 | Clytia hemisphaerica | exon |
| TCONS_00017789-exon-sc0000276-1510915933:35631..35824 | TCONS_00017789-exon-sc0000276-1510915933:35631..35824 | Clytia hemisphaerica | exon |
| TCONS_00017789-exon-sc0000276-1510915933:35093..35290 | TCONS_00017789-exon-sc0000276-1510915933:35093..35290 | Clytia hemisphaerica | exon |
| TCONS_00017789-exon-sc0000276-1510915933:33949..34523 | TCONS_00017789-exon-sc0000276-1510915933:33949..34523 | Clytia hemisphaerica | exon |
| TCONS_00017789-exon-sc0000276-1491911889:35631..35824 | TCONS_00017789-exon-sc0000276-1491911889:35631..35824 | Clytia hemisphaerica | exon |
| TCONS_00017789-exon-sc0000276-1491911889:35093..35290 | TCONS_00017789-exon-sc0000276-1491911889:35093..35290 | Clytia hemisphaerica | exon |
| TCONS_00017789-exon-sc0000276-1491911889:33949..34523 | TCONS_00017789-exon-sc0000276-1491911889:33949..34523 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000276 | supercontig | sc0000276:33949..35824 - |
Blast
BLAST of TCONS_00017789 vs. Swiss-Prot (Human)
Match: TRIP4 (Activating signal cointegrator 1 OS=Homo sapiens GN=TRIP4 PE=1 SV=4) HSP 1 Score: 80.8777 bits (198), Expect = 8.286e-17 Identity = 37/60 (61.67%), Postives = 43/60 (71.67%), Query Frame = 3
Query: 411 KKNLKFIPLFGADGKMKTDTVTLPGRHPCQCLAQKHKLINNCHSCGRIVCEQEGAG*VAF 590
KK KF+ L+ +G+ + V LPGRHPC CL QKHKLINNC CGRIVCEQEG+G F
Sbjct: 144 KKKTKFVNLYTREGQDRL-AVLLPGRHPCDCLGQKHKLINNCLICGRIVCEQEGSGPCLF 202
The following BLAST results are available for this feature:
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