TCONS_00017736 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017736
Unique NameTCONS_00017736
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1311

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017736 ID=TCONS_00017736|Name=TCONS_00017736|organism=Clytia hemisphaerica|type=transcript|length=1311bp
tttaggaaaaaattaAACAGCAATAACAAGTTGATGATAAATATTTTATA
ACAATCAATGAAATTTCAAATGTCATTTATTGGCAATCTTCTATCGAAAC
AAATACTATTTTCAACTACAAACAAATTTGCCATCAATTCCATCAAACAA
AGTTTACTATTAACACAACAAAGCAAACGCCTAATGTCTGGTCAAGTAAT
CACCAATACAGCAGACACTGGTCTACCTTTAAAAGAAGTGCTCCACCAGC
TACAAGAATATGCGTCACCCTCCATCGCAGAGGGTTGGGATAACGTTGGT
TTACTGCTAGAACCCTCCTCCCCACATACAGTCAAACATTTATTCCTTAC
CAACGACTTGACAGAAGACGTATTAGACGAAGCTGTCTCCAAGAAGGCAG
ACCTTATCTTATCTTACCACCCACCCATCTTCTCCAGCATTAAAAGGATA
ACGCAAGAAGCCTGGAAGAATCGACTTAtcatcaaatgttttgaaaacag
AATTGCAATCTACTCCCCACATACTTCCTATGATGTCGTCAAAGGAGGAG
TCAACGATTGGTTGATGAGCTGTTTCCATGGAGATACGAAACCTATCAAA
CCTCTTGAACCAGGGGTTGATAATGGTTTCGGACAAGGTCGAATATGTAC
TTTAAAAGAACCACTGGCTATTGAAGAAGTTGTACAAAAAGTGAAAACAC
ACCTTGGGTTACCTTATTTGAGATTAGCTACTGCACCTGGAGTTGAGCAG
GTCCAGTCGATCGCTTGTTGTGCAGGTTCGGGATCATCTGTTCTCCGTGG
TGTCCGCGCGGACGTTTTTCTGACGGGCGAAATGTCTCATCATGATGTAC
TAgacgccgtttctaccaaaagtCATGTCATTCTATGTGAACATTCAAAC
ACTGAACGTGGTTTCTTAAAAACTCTTATACCTGTTTTTACGGGTatgct
gaaatcgaaagtgaaagtaactGTATCAGAATTAGACAAAGATCCTTTGG
TAGTAGTCTAATGAATTTTTCTTCTAAAATAAATATTGGAATCGAAATTG
Aacattgtgaaaaattggatcattaattttttctgattttttgcatgaaa
gtatagtctactttcatgcaaaaaatcagaaaaaattaatcatTGGTATG
GTGCCTTGGGTAGtttagcaagctagacgactaattcagacatagtagaa
ataaagcaaaaagtaatgaagggaacaattttagttgtccaaaaaccttt
gtgcactaactcctaataaaagaaaagtgtcataatattgcaattataat
tctTTCCCGAT
Run BLAST on NCBI

protein sequence of TCONS_00017736-protein

>TCONS_00017736-protein ID=TCONS_00017736-protein|Name=TCONS_00017736-protein|organism=Clytia hemisphaerica|type=polypeptide|length=317bp
MKFQMSFIGNLLSKQILFSTTNKFAINSIKQSLLLTQQSKRLMSGQVITN
TADTGLPLKEVLHQLQEYASPSIAEGWDNVGLLLEPSSPHTVKHLFLTND
LTEDVLDEAVSKKADLILSYHPPIFSSIKRITQEAWKNRLIIKCFENRIA
IYSPHTSYDVVKGGVNDWLMSCFHGDTKPIKPLEPGVDNGFGQGRICTLK
EPLAIEEVVQKVKTHLGLPYLRLATAPGVEQVQSIACCAGSGSSVLRGVR
ADVFLTGEMSHHDVLDAVSTKSHVILCEHSNTERGFLKTLIPVFTGMLKS
KVKVTVSELDKDPLVVV
Run BLAST on NCBI

transcript from alignment at sc0000274:225048..229494+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017736 ID=TCONS_00017736|Name=TCONS_00017736|organism=Clytia hemisphaerica|type=transcript|length=4447bp|location=Sequence derived from alignment at sc0000274:225048..229494+ (Clytia hemisphaerica)
tttaggaaaaaattaAACAGCAATAACAAGTTGATGATAAATATTTTATA ACAATCAATGAAATTTCAAATGTCATTTATTGGCAATCTTCTATCGAAAC AAATACTATTTTCAACTACAAACAAATTTGCCATCAATTCCATCAAACAA AGTTTACTATTAACACAACAAAGCAAACGCCTAATGTCTGGTCAAGTAAT CACCAATACAGCAGACACTGGTCTACCTTTAAAAGAAGTGCTCCACCAGC TACAAGAATATGCGTCACCCTCCATCGCAGAGGGTTGGGATAACGTTGGT TTACTGCTAGAACCCTCCTCCCCACATACAGTCAAACATTTATTCCTTAC CAACGACTTGACAGAAGACGTATTAGACGAAGCTGTCTCCAAGAAGGCAG ACCTTATCTTATCTTACCACCCACCCATCTTCTCCAGCATTAAAAGGATA ACGCAAGAAGCCTGGAAGAATCGACTTAtcatcaaatgttttgaaaacag AATTGCAATCTACTCCCCACATACTTCCTATGATGTCGTCAAAGGTGAGA ATTGATTTTATGATTCCTTTATTTTTGTGACGTTTTGCTTAAATAAACTA TTACAAAGAAATTaggttttttctgtttttcaatGCATGACAGATTTTTT GCAGATAAGTTCAATTCCGACACTAAtataatgcttaaaaaagcGTTAAG CTGTCGATGTTCCTCAGTTGCTTAAAACCAACCTAATTTGTGTAGCGAGT TGGTTTGATTTGTTTGACTACAAATATTTTGTTACAATCTTTTGATTCAT ATTTACAGTGCTATATCTTTTGTATTCAGGAGGAGTCAACGATTGGTTGA TGAGCTGTTTCCATGGAGATACGAAACCTATCAAACCTCTTGAACCAGGG GTAAGAATTTATGTtccctttttaaaaattttcttaaacttATCAATAAG AAGTTGAAGGGGTTGCAgatgaaattttatttgataCATAAAAAGGTTCC ATCTAACCGAATTTTAAAAgagcgccactctttctctctAGATTGCTCTA CTTACCCTTGCTCCTTCCCTTTAATTACTGAGCATCAAGTAGAGAAGCAT TAAGTACCATTTAGAAAACTTTGTTAAGATTTTGccagggattgaaccca cgaccctGCGCACCGTAGCTTTACTTTTGCGCTACGGTTCGCATCATTTA CTAAAATTTCAAAGCTGATTTGTAGTGTAAAGTTAATTTACCATCTCAga cgaaaaaccttgctttgaccactgaacTAACCTAGAGCAATTGGTTGCGT TGAAATGCTTGTGAAAGCTTTTGGACCTGTCATCACTAGAATTAATTAGT CCACGGCTACCGAAGACAGCCATGATatggataaaagaaaaaaatgcaaa aactttTCAACTACAACATCCACGTTTCTTTTTGTATTCACAGGTTGATA ATGGTTTCGGACAAGGTCGAATATGTACTTTAAAAGAACCACTGGCTATT GAAGAAGTTGTACAAAAAGTGAAAACACACCTTGGGTTACCTTATTTGAG ATTAGCTACTGCACCTGGAGTTGAGCAGGTATGGTGTATCATTTTTAAAT GTTATGTTAATCATAATTGCATAAACGTCCCCTGCTACACTCTGATGCTT AATAAATGGCCATCCCGCTCattaatatttcaatttttctcaacCCCCAC CAAGGACCACCTCCCCCCTgtttattagttttttaaagtactttcagctg tcaaaagaaGAGCCCTTTATTTTGCTAAAAACGAGTTTTAGTATAATTAC cttgtatagaccttttcataaattacgtcacgaacatcacttacctcgtA TTCGGACAATTACCATGGTGGTTATgcctcttgagacattaaatgatttt ttttatgaataggaagtagttttgataaaatctgctgggatttaatcacc atggcaataatttcaaaacgaggcaagtgatgttcgtaatgtaatctatg aaaaggtctatttagagGTACTATTTCAACCCCGGCAATTATGACCCTGA TTTAAAAGTTGGTTGTAACACCAACAGTGCCTTGAATTGAATCGGTTCGC CAAGCGCCTGAATATTTAGCCGATCAATTATTAGACAGTAGGCCTTTTTA ATATTACTTTGCGAACATTTACTGCctctttttgagtttatatGGTAATT GAATCCTTAAAAGGGATCCATCAAAATTCGGCTCTGttggaaaaaattta attttaagtcTCGTGAGATTGAAATACTTCATATTATTTGTCtgaaaacg aggcagtcgttctCCGCGACGTACCGTAGTTTATATTTTGTTGCTATATT TTGCGTATCCATGCTGTAGCAACAtcctcttataaaaaataaaacagccG TAATGACAGCTGCAAACTCTGGTGATTGTCAGGGGTTagcctttcttaat atatctaacctaaaatttaaagtaagtaagtaagtgcGAGCGCAAACGCA AACTAAATTAGGAAATCAAACCGGAAAGATCGGGAAATGGAATCCGACTA TCGTGATTGATCAGATTAAAACACGCACAATTataaatgaaaaacactga ttttataAAACTCCTTAACCGGAGTTTAAGAAGAGTGTTCTTTCTACGTC AAACTTTCGGTCGTACTTTTTATTCAAACACTGTCTTCCCTTGATATGGT TTGCACCACCCTGAAGCTGTTACtattataattattattaaAGTTTTCAT TCTTCTTATCATTCTTACTACGCACACTGATTCGAATTCTCCATGACATA AAAGCAAGTTTATGTTTTCGAAGTAAATCGAAGGAGAATTTATGTCGAAG TTATGTAGATATGAAGACTACACTGTATCACGATTTCaacttcttcattt tctctATCAGAGCTCCTGCTCCAacattatctggcacccagatggttaAA CTTTCATCCAACATTCTATAGCTctaaaggtcgggaaaattttcaacatc tggaaagTTTACATTATGGAATTTTGCGAAACCGCGTCATGGATTTCGCA GCGTTAGGCCTGGAAACATGGCCCTCTTTTTCGTTTTCGTGGTTTGATGG Gtccaaccactgacctttatataaccctggaccaaacaatatctgccatc tttgattggagtttttttggaattggtacccaaggagaagccattgcaat gtNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Ngtgccgacattagggtaccaattttcaaaaaactccgatcaaagatttt gcttggctgggattgagaagctttgtccagggtatataaaggtcagtggg tccaaccgaaatatttttaggttttcGCACAAGGGTACTTtaacccgact ggggatgcggAACCTTAAAGGCCGACCaccattcctctccgatgggaaat tggcaccctcctttagagctttagcgtgggcggccgccaatccgccatcg gaatatcagataacctgCAACAAATCTTCAATCATTCTGATGTCTTTTTC TTTCGNTTTCTCTATCGGACCTCCCCCTCCAACAAATCTTCATTCTGAAT CatctttttctttcgtttcttcTTCTTTCATATCAGGTCCAGTCGATCGC TTGTTGTGCAGGTTCGGGATCATCTGTTCTCCGTGGTGTCCGCGCGGACG TTTTTCTGACGGGCGAAATGTCTCATCATGATGTACTAgacgccgtttct accaaaagtCATGTCATTCTATGTGAACATTCAAACACTGAACGTGGTTT CTTAAAAACTCTTATACCTGTTTTTACGGGTatgctgaaatcgaaagtga aagtaactGTATCAGAATTAGACAAAGATCCTTTGGTAGTAGTCTAATGA ATTTTTCTTCTAAAATAAATATTGGAATCGAAATTGAacattgtgaaaaa ttggatcattaattttttctgattttttgcatgaaagtatagtctacttt catgcaaaaaatcagaaaaaattaatcatTGGTATGGTGCCTTGGGTAGt ttagcaagctagacgactaattcagacatagtagaaataaagcaaaaagt aatgaagggaacaattttagttgtccaaaaacctttgtgcactaactcct aataaaagaaaagtgtcataatattgcaattataattctTTCCCGAT

Coding sequence (CDS) from alignment at sc0000274:225048..229494+

>TCONS_00017736 ID=TCONS_00017736|Name=TCONS_00017736|organism=Clytia hemisphaerica|type=CDS|length=3816bp|location=Sequence derived from alignment at sc0000274:225048..229494+ (Clytia hemisphaerica)
ATGAAATTTCAAATGTCATTTATTGGCAATCTTCTATCGAAACAAATACT
ATTTTCAACTACAAACAAATTTGCCATCAATTCCATCAAACAAAGTTTAC
TATTAACACAACAAAGCAAACGCCTAATGTCTGGTCAAGTAATCACCAAT
ACAGCAGACACTGGTCTACCTTTAAAAGAAGTGCTCCACCAGCTACAAGA
ATATGCGTCACCCTCCATCGCAGAGGGTTGGGATAACGTTGGTTTACTGC
TAGAACCCTCCTCCCCACATACAGTCAAACATTTATTCCTTACCAACGAC
TTGACAGAAGACGTATTAGACGAAGCTGTCTCCAAGAAGGCAGACCTTAT
CTTATCTTACCACCCACCCATCTTCTCCAGCATTAAAAGGATAACGCAAG
AAGCCTGGAAGAATCGACTTAtcatcaaatgttttgaaaacagAATTGCA
ATCTACTCCCCACATACTTCCTATGATGTCGTCAAAGGAGGAGTCAACGA
TTGGTTGATGAGCTGTTTCCATGGAGATACGAAACCTATCAAACCTCTTG
AACCAGGGGTTGATAATGGTTTCGGACAAGGTCGAATATGTACTTTAAAA
GAACCACTGGCTATTGAAGAAGTTGTACAAAAAGTGAAAACACACCTTGG
GTTACCTTATTTGAGATTAGCTACTGCACCTGGAGTTGAGCAGGTCCAGT
CGATCGCTTGTTGTGCAGGTTCGGGATCATCTGTTCTCCGTGGTGTCCGC
GCGGACGTTTTTCTGACGGGCGAAATGTCTCATCATGATGTACTAgacgc
cgtttctaccaaaagtCATGTCATTCTATGTGAACATTCAAACACTGAAC
GTGGTTTCTTAAAAACTCTTATACCTGTTTTTACGGGTatgctgaaatcg
aaagtgaaagtaactGTATCAGAATTAGACAAAGATCCTTTGGTAGTAGT
CTAAATGAAATTTCAAATGTCATTTATTGGCAATCTTCTATCGAAACAAA
TACTATTTTCAACTACAAACAAATTTGCCATCAATTCCATCAAACAAAGT
TTACTATTAACACAACAAAGCAAACGCCTAATGTCTGGTCAAGTAATCAC
CAATACAGCAGACACTGGTCTACCTTTAAAAGAAGTGCTCCACCAGCTAC
AAGAATATGCGTCACCCTCCATCGCAGAGGGTTGGGATAACGTTGGTTTA
CTGCTAGAACCCTCCTCCCCACATACAGTCAAACATTTATTCCTTACCAA
CGACTTGACAGAAGACGTATTAGACGAAGCTGTCTCCAAGAAGGCAGACC
TTATCTTATCTTACCACCCACCCATCTTCTCCAGCATTAAAAGGATAACG
CAAGAAGCCTGGAAGAATCGACTTAtcatcaaatgttttgaaaacagAAT
TGCAATCTACTCCCCACATACTTCCTATGATGTCGTCAAAGGAGGAGTCA
ACGATTGGTTGATGAGCTGTTTCCATGGAGATACGAAACCTATCAAACCT
CTTGAACCAGGGGTTGATAATGGTTTCGGACAAGGTCGAATATGTACTTT
AAAAGAACCACTGGCTATTGAAGAAGTTGTACAAAAAGTGAAAACACACC
TTGGGTTACCTTATTTGAGATTAGCTACTGCACCTGGAGTTGAGCAGGTC
CAGTCGATCGCTTGTTGTGCAGGTTCGGGATCATCTGTTCTCCGTGGTGT
CCGCGCGGACGTTTTTCTGACGGGCGAAATGTCTCATCATGATGTACTAg
acgccgtttctaccaaaagtCATGTCATTCTATGTGAACATTCAAACACT
GAACGTGGTTTCTTAAAAACTCTTATACCTGTTTTTACGGGTatgctgaa
atcgaaagtgaaagtaactGTATCAGAATTAGACAAAGATCCTTTGGTAG
TAGTCTAAATGAAATTTCAAATGTCATTTATTGGCAATCTTCTATCGAAA
CAAATACTATTTTCAACTACAAACAAATTTGCCATCAATTCCATCAAACA
AAGTTTACTATTAACACAACAAAGCAAACGCCTAATGTCTGGTCAAGTAA
TCACCAATACAGCAGACACTGGTCTACCTTTAAAAGAAGTGCTCCACCAG
CTACAAGAATATGCGTCACCCTCCATCGCAGAGGGTTGGGATAACGTTGG
TTTACTGCTAGAACCCTCCTCCCCACATACAGTCAAACATTTATTCCTTA
CCAACGACTTGACAGAAGACGTATTAGACGAAGCTGTCTCCAAGAAGGCA
GACCTTATCTTATCTTACCACCCACCCATCTTCTCCAGCATTAAAAGGAT
AACGCAAGAAGCCTGGAAGAATCGACTTAtcatcaaatgttttgaaaaca
gAATTGCAATCTACTCCCCACATACTTCCTATGATGTCGTCAAAGGAGGA
GTCAACGATTGGTTGATGAGCTGTTTCCATGGAGATACGAAACCTATCAA
ACCTCTTGAACCAGGGGTTGATAATGGTTTCGGACAAGGTCGAATATGTA
CTTTAAAAGAACCACTGGCTATTGAAGAAGTTGTACAAAAAGTGAAAACA
CACCTTGGGTTACCTTATTTGAGATTAGCTACTGCACCTGGAGTTGAGCA
GGTCCAGTCGATCGCTTGTTGTGCAGGTTCGGGATCATCTGTTCTCCGTG
GTGTCCGCGCGGACGTTTTTCTGACGGGCGAAATGTCTCATCATGATGTA
CTAgacgccgtttctaccaaaagtCATGTCATTCTATGTGAACATTCAAA
CACTGAACGTGGTTTCTTAAAAACTCTTATACCTGTTTTTACGGGTatgc
tgaaatcgaaagtgaaagtaactGTATCAGAATTAGACAAAGATCCTTTG
GTAGTAGTCTAAATGAAATTTCAAATGTCATTTATTGGCAATCTTCTATC
GAAACAAATACTATTTTCAACTACAAACAAATTTGCCATCAATTCCATCA
AACAAAGTTTACTATTAACACAACAAAGCAAACGCCTAATGTCTGGTCAA
GTAATCACCAATACAGCAGACACTGGTCTACCTTTAAAAGAAGTGCTCCA
CCAGCTACAAGAATATGCGTCACCCTCCATCGCAGAGGGTTGGGATAACG
TTGGTTTACTGCTAGAACCCTCCTCCCCACATACAGTCAAACATTTATTC
CTTACCAACGACTTGACAGAAGACGTATTAGACGAAGCTGTCTCCAAGAA
GGCAGACCTTATCTTATCTTACCACCCACCCATCTTCTCCAGCATTAAAA
GGATAACGCAAGAAGCCTGGAAGAATCGACTTAtcatcaaatgttttgaa
aacagAATTGCAATCTACTCCCCACATACTTCCTATGATGTCGTCAAAGG
AGGAGTCAACGATTGGTTGATGAGCTGTTTCCATGGAGATACGAAACCTA
TCAAACCTCTTGAACCAGGGGTTGATAATGGTTTCGGACAAGGTCGAATA
TGTACTTTAAAAGAACCACTGGCTATTGAAGAAGTTGTACAAAAAGTGAA
AACACACCTTGGGTTACCTTATTTGAGATTAGCTACTGCACCTGGAGTTG
AGCAGGTCCAGTCGATCGCTTGTTGTGCAGGTTCGGGATCATCTGTTCTC
CGTGGTGTCCGCGCGGACGTTTTTCTGACGGGCGAAATGTCTCATCATGA
TGTACTAgacgccgtttctaccaaaagtCATGTCATTCTATGTGAACATT
CAAACACTGAACGTGGTTTCTTAAAAACTCTTATACCTGTTTTTACGGGT
atgctgaaatcgaaagtgaaagtaactGTATCAGAATTAGACAAAGATCC
TTTGGTAGTAGTCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009934XLOC_009934Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017736-exon-sc0000274-1491911889:225048..225591TCONS_00017736-exon-sc0000274-1491911889:225048..225591Clytia hemisphaericaexon
TCONS_00017736-exon-sc0000274-1510915933:225048..225591TCONS_00017736-exon-sc0000274-1510915933:225048..225591Clytia hemisphaericaexon
TCONS_00017736-exon-sc0000274-1575043694:225048..225591TCONS_00017736-exon-sc0000274-1575043694:225048..225591Clytia hemisphaericaexon
TCONS_00017736-exon-sc0000274-1491911889:225877..225947TCONS_00017736-exon-sc0000274-1491911889:225877..225947Clytia hemisphaericaexon
TCONS_00017736-exon-sc0000274-1510915933:225877..225947TCONS_00017736-exon-sc0000274-1510915933:225877..225947Clytia hemisphaericaexon
TCONS_00017736-exon-sc0000274-1575043694:225877..225947TCONS_00017736-exon-sc0000274-1575043694:225877..225947Clytia hemisphaericaexon
TCONS_00017736-exon-sc0000274-1491911889:226491..226625TCONS_00017736-exon-sc0000274-1491911889:226491..226625Clytia hemisphaericaexon
TCONS_00017736-exon-sc0000274-1510915933:226491..226625TCONS_00017736-exon-sc0000274-1510915933:226491..226625Clytia hemisphaericaexon
TCONS_00017736-exon-sc0000274-1575043694:226491..226625TCONS_00017736-exon-sc0000274-1575043694:226491..226625Clytia hemisphaericaexon
TCONS_00017736-exon-sc0000274-1491911889:228934..229494TCONS_00017736-exon-sc0000274-1491911889:228934..229494Clytia hemisphaericaexon
TCONS_00017736-exon-sc0000274-1510915933:228934..229494TCONS_00017736-exon-sc0000274-1510915933:228934..229494Clytia hemisphaericaexon
TCONS_00017736-exon-sc0000274-1575043694:228934..229494TCONS_00017736-exon-sc0000274-1575043694:228934..229494Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017736-proteinTCONS_00017736-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000274supercontigsc0000274:225048..229494 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
22.5512 22.4303 15.9059 13.9277 4.85755 4.66478 11.5891 12.2607 9.17768 9.55638 8.46033 8.51079 9.10105 9.22548 11.6354 15.4089 16.6699 17.2563 6.75658 6.60844 11.9509 12.2154 11.0307 10.78 10.0555 9.81793 11.6022 11.4384 8.63307 9.15605
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002678GTP_cyclohydrolase_I/Nif3
IPR017222NIF3L1_animal
Blast
BLAST of TCONS_00017736 vs. Swiss-Prot (Human)
Match: NIF3L (NIF3-like protein 1 OS=Homo sapiens GN=NIF3L1 PE=1 SV=2)

HSP 1 Score: 169.859 bits (429), Expect = 1.574e-47
Identity = 79/137 (57.66%), Postives = 99/137 (72.26%), Query Frame = 1
Query:  196 VITNTADTGLPLKEVLHQLQEYASPSIAEGWDNVGLLLEPSSPHTVKHLFLTNDLTEDVLDEAVSKKADLILSYHPPIFSSIKRITQEAWKNRLIIKCFENRIAIYSPHTSYDVVKGGVNDWLMSCFHGDT-KPIKP 603
            +I N++ + + LK +L  L ++AS S AE WDNVGLL+EPS PHTV  LFLTNDLTE+V++E + KKADLILSYHPPIF  +KRIT   WK RL+I+  ENR+ IYSPHT+YD    GVN+WL       T +PI P
Sbjct:   19 LICNSSRSFMDLKALLSSLNDFASLSFAESWDNVGLLVEPSPPHTVNTLFLTNDLTEEVMEEVLQKKADLILSYHPPIFRPMKRITWNTWKERLVIRALENRVGIYSPHTAYDAAPQGVNNWLAKGLGACTSRPIHP 155          

HSP 2 Score: 141.354 bits (355), Expect = 2.812e-37
Identity = 69/129 (53.49%), Postives = 92/129 (71.32%), Query Frame = 1
Query:  631 GQGRICTLKEPLAIEEVVQKVKTHLGLPYLRLATAPGV---EQVQSIACCAGSGSSVLRGVRADVFLTGEMSHHDVLDAVSTKSHVILCEHSNTERGFLKTLIPVFTGMLKSKVKVTVSELDKDPLVVV 1008
            G GR+CTL E +++  ++ ++K HL L ++RLA   G     QV+ +A CAGSGSSVL+GV AD++LTGEMSHHD LDA S   +VILCEHSNTERGFL  L  +    L++K+ + +SE D+DPL VV
Sbjct:  249 GMGRLCTLDESVSLATMIDRIKRHLKLSHIRLALGVGRTLESQVKVVALCAGSGSSVLQGVEADLYLTGEMSHHDTLDAASQGINVILCEHSNTERGFLSDLRDMLDSHLENKINIILSETDRDPLQVV 377          
The following BLAST results are available for this feature:
BLAST of TCONS_00017736 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NIF3L1.574e-4757.66NIF3-like protein 1 OS=Homo sapiens GN=NIF3L1 PE=1... [more]
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