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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017734 ID=TCONS_00017734|Name=TCONS_00017734|organism=Clytia hemisphaerica|type=transcript|length=2214bpRun BLAST on NCBI protein sequence of TCONS_00017734-protein >TCONS_00017734-protein ID=TCONS_00017734-protein|Name=TCONS_00017734-protein|organism=Clytia hemisphaerica|type=polypeptide|length=541bp MNFNSQFDEELEALEAIYMDDLIINIDELATLQMTLHPATADDDDKKFVCRun BLAST on NCBI transcript from alignment at sc0000274:205849..224823+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00017734 ID=TCONS_00017734|Name=TCONS_00017734|organism=Clytia hemisphaerica|type=transcript|length=18975bp|location=Sequence derived from alignment at sc0000274:205849..224823+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000274:205849..224823+ >TCONS_00017734 ID=TCONS_00017734|Name=TCONS_00017734|organism=Clytia hemisphaerica|type=CDS|length=16260bp|location=Sequence derived from alignment at sc0000274:205849..224823+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00017734 vs. Swiss-Prot (Human)
Match: RNF25 (E3 ubiquitin-protein ligase RNF25 OS=Homo sapiens GN=RNF25 PE=1 SV=1) HSP 1 Score: 162.155 bits (409), Expect = 6.362e-43 Identity = 92/265 (34.72%), Postives = 139/265 (52.45%), Query Frame = 3
Query: 168 FDEELEALEAIYMDDLIINIDELAT----LQMTLHPATADDDDKKFVCLTLICTVTKQYPENKPSFDLKNPRGLSDAHLASIKENLEALAGQKIGEMMLYDLLEYARGSLTDNNHPSCVCPICLEYFKEEESFFRTECYHYFHFPCIQGYVK--------------------SVTEKHI---CPVCRLEINDKDVETILNNNSKLSIDFESDKETS-YTNTHEYKKWLAQCKVMYDKQKQNGGIIDLDYERNKYLIPSAPTPVPS 878
E+E LE+IY+D+L + T + +TLHPATA+D D ++VC TL+ V +YP P ++NPRGLSD + +I + L +A +G MLY+L+E + LTDNN P C ICL F+E+E+F +T CYHYFH C+ Y++ + +K + CPVCR E ++ + + L E + Y + E + + K +Y +Q++ GGIIDL+ ERN+Y I P P+
Sbjct: 16 LPSEVEVLESIYLDELQVIKGNGRTSPWEIYITLHPATAEDQDSQYVCFTLVLQVPAEYPHEVPQISIRNPRGLSDEQIHTILQVLGHVAKAGLGTAMLYELIEKGKEILTDNNIPHGQCVICLYGFQEKEAFTKTPCYHYFHCHCLARYIQHMEQELKAQGQEQEQERQHATTKQKAVGVQCPVCR--------EPLVYDLASLKAAPEPQQPMELYQPSAESLRQQEERKRLYQRQQERGGIIDLEAERNRYFISLQQPPAPA 272 The following BLAST results are available for this feature:
BLAST of TCONS_00017734 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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