TCONS_00017734-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00017734-protein
Unique NameTCONS_00017734-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length541

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00017734-protein ID=TCONS_00017734-protein|Name=TCONS_00017734-protein|organism=Clytia hemisphaerica|type=polypeptide|length=541bp
MNFNSQFDEELEALEAIYMDDLIINIDELATLQMTLHPATADDDDKKFVC
LTLICTVTKQYPENKPSFDLKNPRGLSDAHLASIKENLEALAGQKIGEMM
LYDLLEYARGSLTDNNHPSCVCPICLEYFKEEESFFRTECYHYFHFPCIQ
GYVKSVTEKHICPVCRLEINDKDVETILNNNSKLSIDFESDKETSYTNTH
EYKKWLAQCKVMYDKQKQNGGIIDLDYERNKYLIPSAPTPVPSNELENED
QSTELESQANTLFEHANNVSTEPKKPKNKNKQGKYDQGKTRQKESRSVKE
SSHSKPNKSYQKQHKTGGDRNVQPVNNPKASSNGPDERPSSSKAKSKLPK
EKNEKQQTQKATNNEESKPRKNTEGKDDSPKPKPSKSVSEKEKDKGVKSI
PQRPKDSTRPPSKNHGTGIPRDVDQASSSGLDKENTATSSKSKKKRHKKK
TETQHPHKAEGTNISSAGDHQKTGSKKPSKVGWANVPANTSSNDDKDFPS
LGGTKDTPTDRGKATVTGRCEPKPPPGFERKVRPPPGFKPI
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_009933XLOC_009933Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00017734TCONS_00017734Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006575RWD-domain
IPR001841Znf_RING
IPR016135UBQ-conjugating_enzyme/RWD
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006575RWD domainSMARTSM00591RWD2001bcoord: 9..115
e-value: 4.3E-23
score: 92.7
IPR006575RWD domainPFAMPF05773RWDcoord: 8..109
e-value: 5.7E-16
score: 58.8
IPR006575RWD domainPROSITEPS50908RWDcoord: 9..115
score: 22.628
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 122..165
e-value: 2.0E-7
score: 40.7
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 122..166
e-value: 1.9E-7
score: 31.2
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 122..166
score: 12.593
IPR001841Zinc finger, RING-typeCDDcd00162RINGcoord: 122..169
e-value: 2.05047E-10
score: 55.9148
IPR016135Ubiquitin-conjugating enzyme/RWD-likeGENE3D3.10.110.10coord: 2..115
e-value: 1.2E-24
score: 86.3
IPR016135Ubiquitin-conjugating enzyme/RWD-likeSUPERFAMILY54495UBC-likecoord: 4..109
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 116..190
e-value: 2.4E-15
score: 55.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 234..541
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 121..172

Blast
[Close]
BLAST of TCONS_00017734-protein vs. Swiss-Prot (Human)
Match: RNF25 (E3 ubiquitin-protein ligase RNF25 OS=Homo sapiens GN=RNF25 PE=1 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.292e-45
Identity = 92/262 (35.11%), Postives = 139/262 (53.05%), Query Frame = 0 
Query:   10 ELEALEAIYMDDLIINIDELAT----LQMTLHPATADDDDKKFVCLTLICTVTKQYPENKPSFDLKNPRGLSDAHLASIKENLEALAGQKIGEMMLYDLLEYARGSLTDNNHPSCVCPICLEYFKEEESFFRTECYHYFHFPCIQGYVKSVTEK-------------HI----------CPVCRLEINDKDVETILNNNSKLSIDFESDKETS-YTNTHEYKKWLAQCKVMYDKQKQNGGIIDLDYERNKYLIPSAPTPVPS 243
            E+E LE+IY+D+L +      T    + +TLHPATA+D D ++VC TL+  V  +YP   P   ++NPRGLSD  + +I + L  +A   +G  MLY+L+E  +  LTDNN P   C ICL  F+E+E+F +T CYHYFH  C+  Y++ + ++             H           CPVCR        E ++ + + L    E  +    Y  + E  +   + K +Y +Q++ GGIIDL+ ERN+Y I     P P+
Sbjct:   19 EVEVLESIYLDELQVIKGNGRTSPWEIYITLHPATAEDQDSQYVCFTLVLQVPAEYPHEVPQISIRNPRGLSDEQIHTILQVLGHVAKAGLGTAMLYELIEKGKEILTDNNIPHGQCVICLYGFQEKEAFTKTPCYHYFHCHCLARYIQHMEQELKAQGQEQEQERQHATTKQKAVGVQCPVCR--------EPLVYDLASLKAAPEPQQPMELYQPSAESLRQQEERKRLYQRQQERGGIIDLEAERNRYFISLQQPPAPA 272
The following BLAST results are available for this feature:
BLAST of TCONS_00017734-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RNF252.292e-4535.11E3 ubiquitin-protein ligase RNF25 OS=Homo sapiens ... [more]
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