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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017717 ID=TCONS_00017717|Name=TCONS_00017717|organism=Clytia hemisphaerica|type=transcript|length=1878bp
ATCCAAATGAGATAATCAGCAAACGATTTTAAATCTATCCAATTCGAAAG
CTGTAAAAAGTGTATagtaaaaattatattaaaatattcgtaaataacaa
taacaataatggaatttataaatatataaaaatacattttactaataaaa
aatattgaaaggtATTATAATATATATGCATAATACGACAGNTTACACTA
TGTAAAAAGTGTATagtaaaaattatattaaaatattcgtaaataacaat
aacaataatggaatttataaatatataaaaatacattttactaataaaaa
atattgaaaggtATTATAATATATATGCATAATACGACAGTTCCGGAATT
ATTACAAAAATAACATAAACTATTCTAACTAGAAATGATTCAGTCAAAAA
TAATACCCTTGAATAAGACCCTATCATTAACAAAAACTACagaaaacagc
taaaaaaatgCAGCATTGTTTCACAATTTTGGACCACAATGTCTTACTAG
AAGGAAGGAATAATTtctatacacgctttttttttataagaatacacttt
atcataagaatgtccatgatgaaaatggtcaaaaaattaagaatatggta
agaatatcaccatcatggaatttagaaactgaacctaagaatgccatttt
aaaggcattttaacctgaagattgccaatttcgatcttaacctaagaata
ccgtaagaatatttttggatgattttcgccaaaaagttaagaatatccat
gatgaaatgaaaaaacaccattcttataaaaaaaaagcgtgtattgaatT
TTAATGGAGACAGTTCATCTTTTGGAAACTGACCATCATTTCATAAAATA
TTCAATTAGAGTTCTCAACAGCTGTAGATTTCTGTTCACCAAGCTCAGGT
GTCTGCTTAGCTTCGATAGGACTGTGGACAGGACTTTCAACATTGGCGTT
CAATTTAGCCATCAATTCTTCCAGCTTTTTAGCTTTCCTAATTTCATTCT
CTTGAATAATAGTATATAAATGTTCTTGCAGCTCGTCCTTATgctctttc
tttttataataatcTAGCTTAGCATTCACATACTCTTTCTCTGCATCTTG
GAATCGCTTTTGAGCTTGCGAGAATTCCACACAAGCATCGTCAATCTTAT
CACGTAATATCTTCACATCGACCTGTAACAATTGATCTAATTTTGACAAT
TCTTTATTGATTTGCATCAGTTTTTTTGACTCGTATTGTGTTTGACGCAT
TCTCTCAGCTAATGCTTCTTTGATCATGgattgtttctttttgttttgtt
cttcTATGACTTTTTGCTGAATTTGCAATTTTGCTAACGACGACATTTGT
TTCTCGGCAGCTTCAGTGTCGGTCAAAACTCTAATATCGACTTCCTTTTT
CTCCTCGATGTTGGTACAAACTGGTTGCTGTTTAGGTGGAACATCCTTTA
TTGCTGTGTCACTTATTGAACCAGTACTCGTAGTATCCTTACCAGAATTA
TTTTGACAATCACTGTCATCTTTGGTAGAATCTCCAGGAACAGATGTGTT
TGATACATCTTTCTCCATTTTCTCTACTTGTGTATTATCAACCTGAGGAT
GAGGGATAGGTTTAGgtcttttcttttcaacttttcgtTGTGTACCGTCT
ATTTTTGATGGTTTTGGCTTGGTGgctttatttctttcttttggtACATC
GCTATCTTGAAGATTCAGTAATTCTTGTTCAGTAAAACCATTCCATCCag
ccatttcattttattttctacttttattttttatactatgtctaaataaa
gagaaataaatataaaattagTATGACAAAGACATAAAGTTTGATAAAGT
GTGCGATAATCTGTGTCTCATAATATAA Run BLAST on NCBI protein sequence of TCONS_00017717-protein >TCONS_00017717-protein ID=TCONS_00017717-protein|Name=TCONS_00017717-protein|organism=Clytia hemisphaerica|type=polypeptide|length=300bp
MAGWNGFTEQELLNLQDSDVPKERNKATKPKPSKIDGTQRKVEKKRPKPI
PHPQVDNTQVEKMEKDVSNTSVPGDSTKDDSDCQNNSGKDTTSTGSISDT
AIKDVPPKQQPVCTNIEEKKEVDIRVLTDTEAAEKQMSSLAKLQIQQKVI
EEQNKKKQSMIKEALAERMRQTQYESKKLMQINKELSKLDQLLQVDVKIL
RDKIDDACVEFSQAQKRFQDAEKEYVNAKLDYYKKKEHKDELQEHLYTII
QENEIRKAKKLEELMAKLNANVESPVHSPIEAKQTPELGEQKSTAVENSN Run BLAST on NCBI transcript from alignment at sc0000273:218534..220411 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017717 ID=TCONS_00017717|Name=TCONS_00017717|organism=Clytia hemisphaerica|type=transcript|length=1878bp|location=Sequence derived from alignment at sc0000273:218534..220411 (Clytia hemisphaerica)
TTATATTATGAGACACAGATTATCGCACACTTTATCAAACTTTATGTCTT
TGTCATActaattttatatttatttctctttatttagacatagtataaaa
aataaaagtagaaaataaaatgaaatggctGGATGGAATGGTTTTACTGA
ACAAGAATTACTGAATCTTCAAGATAGCGATGTaccaaaagaaagaaata
aagcCACCAAGCCAAAACCATCAAAAATAGACGGTACACAacgaaaagtt
gaaaagaaaagacCTAAACCTATCCCTCATCCTCAGGTTGATAATACACA
AGTAGAGAAAATGGAGAAAGATGTATCAAACACATCTGTTCCTGGAGATT
CTACCAAAGATGACAGTGATTGTCAAAATAATTCTGGTAAGGATACTACG
AGTACTGGTTCAATAAGTGACACAGCAATAAAGGATGTTCCACCTAAACA
GCAACCAGTTTGTACCAACATCGAGGAGAAAAAGGAAGTCGATATTAGAG
TTTTGACCGACACTGAAGCTGCCGAGAAACAAATGTCGTCGTTAGCAAAA
TTGCAAATTCAGCAAAAAGTCATAgaagaacaaaacaaaaagaaacaatc
CATGATCAAAGAAGCATTAGCTGAGAGAATGCGTCAAACACAATACGAGT
CAAAAAAACTGATGCAAATCAATAAAGAATTGTCAAAATTAGATCAATTG
TTACAGGTCGATGTGAAGATATTACGTGATAAGATTGACGATGCTTGTGT
GGAATTCTCGCAAGCTCAAAAGCGATTCCAAGATGCAGAGAAAGAGTATG
TGAATGCTAAGCTAgattattataaaaagaaagagcATAAGGACGAGCTG
CAAGAACATTTATATACTATTATTCAAGAGAATGAAATTAGGAAAGCTAA
AAAGCTGGAAGAATTGATGGCTAAATTGAACGCCAATGTTGAAAGTCCTG
TCCACAGTCCTATCGAAGCTAAGCAGACACCTGAGCTTGGTGAACAGAAA
TCTACAGCTGTTGAGAACTCTAATTGAATATTTTATGAAATGATGGTCAG
TTTCCAAAAGATGAACTGTCTCCATTAAAattcaatacacgctttttttt
tataagaatggtgttttttcatttcatcatggatattcttaactttttgg
cgaaaatcatccaaaaatattcttacggtattcttaggttaagatcgaaa
ttggcaatcttcaggttaaaatgcctttaaaatggcattcttaggttcag
tttctaaattccatgatggtgatattcttaccatattcttaattttttga
ccattttcatcatggacattcttatgataaagtgtattcttataaaaaaa
aagcgtgtatagaAATTATTCCTTCCTTCTAGTAAGACATTGTGGTCCAA
AATTGTGAAACAATGCTGcatttttttagctgttttctGTAGTTTTTGTT
AATGATAGGGTCTTATTCAAGGGTATTATTTTTGACTGAATCATTTCTAG
TTAGAATAGTTTATGTTATTTTTGTAATAATTCCGGAACTGTCGTATTAT
GCATATATATTATAATacctttcaatattttttattagtaaaatgtattt
ttatatatttataaattccattattgttattgttatttacgaatatttta
atataatttttactATACACTTTTTACATAGTGTAANCTGTCGTATTATG
CATATATATTATAATacctttcaatattttttattagtaaaatgtatttt
tatatatttataaattccattattgttattgttatttacgaatattttaa
tataatttttactATACACTTTTTACAGCTTTCGAATTGGATAGATTTAA
AATCGTTTGCTGATTATCTCATTTGGAT Coding sequence (CDS) from alignment at sc0000273:218534..220411 >TCONS_00017717 ID=TCONS_00017717|Name=TCONS_00017717|organism=Clytia hemisphaerica|type=CDS|length=903bp|location=Sequence derived from alignment at sc0000273:218534..220411 (Clytia hemisphaerica)
atggctGGATGGAATGGTTTTACTGAACAAGAATTACTGAATCTTCAAGA
TAGCGATGTaccaaaagaaagaaataaagcCACCAAGCCAAAACCATCAA
AAATAGACGGTACACAacgaaaagttgaaaagaaaagacCTAAACCTATC
CCTCATCCTCAGGTTGATAATACACAAGTAGAGAAAATGGAGAAAGATGT
ATCAAACACATCTGTTCCTGGAGATTCTACCAAAGATGACAGTGATTGTC
AAAATAATTCTGGTAAGGATACTACGAGTACTGGTTCAATAAGTGACACA
GCAATAAAGGATGTTCCACCTAAACAGCAACCAGTTTGTACCAACATCGA
GGAGAAAAAGGAAGTCGATATTAGAGTTTTGACCGACACTGAAGCTGCCG
AGAAACAAATGTCGTCGTTAGCAAAATTGCAAATTCAGCAAAAAGTCATA
gaagaacaaaacaaaaagaaacaatcCATGATCAAAGAAGCATTAGCTGA
GAGAATGCGTCAAACACAATACGAGTCAAAAAAACTGATGCAAATCAATA
AAGAATTGTCAAAATTAGATCAATTGTTACAGGTCGATGTGAAGATATTA
CGTGATAAGATTGACGATGCTTGTGTGGAATTCTCGCAAGCTCAAAAGCG
ATTCCAAGATGCAGAGAAAGAGTATGTGAATGCTAAGCTAgattattata
aaaagaaagagcATAAGGACGAGCTGCAAGAACATTTATATACTATTATT
CAAGAGAATGAAATTAGGAAAGCTAAAAAGCTGGAAGAATTGATGGCTAA
ATTGAACGCCAATGTTGAAAGTCCTGTCCACAGTCCTATCGAAGCTAAGC
AGACACCTGAGCTTGGTGAACAGAAATCTACAGCTGTTGAGAACTCTAAT
TGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017717-exon-sc0000273-1491911889:218534..220411 | TCONS_00017717-exon-sc0000273-1491911889:218534..220411 | Clytia hemisphaerica | exon |
| TCONS_00017717-exon-sc0000273-1510915933:218534..220411 | TCONS_00017717-exon-sc0000273-1510915933:218534..220411 | Clytia hemisphaerica | exon |
| TCONS_00017717-exon-sc0000273-1575043694:218534..220411 | TCONS_00017717-exon-sc0000273-1575043694:218534..220411 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000273 | supercontig | sc0000273:218534..220411 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR007033 | GORAB |
Blast
BLAST of TCONS_00017717 vs. Swiss-Prot (Human)
Match: GORAB (RAB6-interacting golgin OS=Homo sapiens GN=GORAB PE=1 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 8.251e-29 Identity = 93/277 (33.57%), Postives = 146/277 (52.71%), Query Frame = -2
Query: 987 GWNGFTEQELLNLQDSDVPKE---------------RNKATKPKPSKIDGTQRKVEKKRPKPIPHPQVDNTQVEK-------MEKDVSNTSVPGDSTKDDSDCQNNS-GKDTTSTGSISDTAIKDVPPKQQPVCTNIEEKKEVDIRVLTDTEAAEKQMSSLAKLQIQQKVIEEQNKKKQSMIKEALAERMRQTQYESKKLMQINKELSKLDQLLQVDVKILRDKIDDACVEFSQAQKRFQDAEKEYVNAKLDYYKKKEHKDELQEHLYTIIQENEIR 1748
GW GF+E+EL L+ + P E R KA + K+ G Q P+ + V+K + + TS GD + Q G + + G ++ +PPK P C EKK+V++ ++ S LQ +Q+++EE+NK+K++++ +A+AER ++TQ E+ KL +I KEL LD ++ D+ ILR++ID A +++S A+KRF AE EY+ AKLD +K E K++L EHL TIIQ+NE+R
Sbjct: 29 GWAGFSEEELRRLKQTKDPFEPQRRLPAKKSRQQLQREKALVEQSQKL-GLQDGSTSLLPEQLLSAPKQRVNVQKPPFSSPTLPSHFTLTSPVGDGQPQGIESQPKELGLENSHDG---HNNVEILPPK--PDCKL--EKKKVEL----------QEKSRWEVLQQEQRLMEEKNKRKKALLAKAIAERSKRTQAETMKLKRIQKELQALDDMVSADIGILRNRIDQASLDYSYARKRFDRAEAEYIAAKLDIQRKTEIKEQLTEHLCTIIQQNELR 287
The following BLAST results are available for this feature:
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