TCONS_00017717-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00017717-protein
Unique Name	TCONS_00017717-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	300

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00017717-protein ID=TCONS_00017717-protein|Name=TCONS_00017717-protein|organism=Clytia hemisphaerica|type=polypeptide|length=300bp
MAGWNGFTEQELLNLQDSDVPKERNKATKPKPSKIDGTQRKVEKKRPKPI
PHPQVDNTQVEKMEKDVSNTSVPGDSTKDDSDCQNNSGKDTTSTGSISDT
AIKDVPPKQQPVCTNIEEKKEVDIRVLTDTEAAEKQMSSLAKLQIQQKVI
EEQNKKKQSMIKEALAERMRQTQYESKKLMQINKELSKLDQLLQVDVKIL
RDKIDDACVEFSQAQKRFQDAEKEYVNAKLDYYKKKEHKDELQEHLYTII
QENEIRKAKKLEELMAKLNANVESPVHSPIEAKQTPELGEQKSTAVENSN

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_009917	XLOC_009917	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00017717	TCONS_00017717	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR007033	GORAB

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 143..163
None	No IPR available	COILS	Coil	Coil	coord: 251..271
None	No IPR available	COILS	Coil	Coil	coord: 204..231
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..114
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 273..300
IPR007033	RAB6-interacting golgin	PFAM	PF04949	Transcrip_act	coord: 130..268 e-value: 4.8E-10 score: 39.4

Blast

[Close]

BLAST of TCONS_00017717-protein vs. Swiss-Prot (Human)
Match: GORAB (RAB6-interacting golgin OS=Homo sapiens GN=GORAB PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 3.763e-37
Identity = 104/298 (34.90%), Postives = 163/298 (54.70%), Query Frame = 0

Query:    3 GWNGFTEQELLNLQDSDVPKE---------------RNKATKPKPSKI---DGT------------QRKVEKKRPKPIPHPQVDNTQVEKMEKDVSNTSVPGDSTKDDSDCQNNS-GKDTTSTGSISDTAIKDVPPKQQPVCTNIEEKKEVDIRVLTDTEAAEKQMSSLAKLQIQQKVIEEQNKKKQSMIKEALAERMRQTQYESKKLMQINKELSKLDQLLQVDVKILRDKIDDACVEFSQAQKRFQDAEKEYVNAKLDYYKKKEHKDELQEHLYTIIQENEIRKAKKLEELMAKLN 269
            GW GF+E+EL  L+ +  P E               R KA   +  K+   DG+            +++V  ++P P   P + +          + TS  GD      + Q    G + +  G      ++ +PPK  P C    EKK+V++          ++ S    LQ +Q+++EE+NK+K++++ +A+AER ++TQ E+ KL +I KEL  LD ++  D+ ILR++ID A +++S A+KRF  AE EY+ AKLD  +K E K++L EHL TIIQ+NE+RKAKKLEELM +L+
Sbjct:   29 GWAGFSEEELRRLKQTKDPFEPQRRLPAKKSRQQLQREKALVEQSQKLGLQDGSTSLLPEQLLSAPKQRVNVQKP-PFSSPTLPS--------HFTLTSPVGDGQPQGIESQPKELGLENSHDG---HNNVEILPPK--PDCKL--EKKKVEL----------QEKSRWEVLQQEQRLMEEKNKRKKALLAKAIAERSKRTQAETMKLKRIQKELQALDDMVSADIGILRNRIDQASLDYSYARKRFDRAEAEYIAAKLDIQRKTEIKEQLTEHLCTIIQQNELRKAKKLEELMQQLD 300

The following BLAST results are available for this feature:

BLAST of TCONS_00017717-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00017717-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
GORAB	3.763e-37	34.90	RAB6-interacting golgin OS=Homo sapiens GN=GORAB P...	[more]

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TCONS_00017717-protein (polypeptide) - C. hemisphaerica