TCONS_00017697 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017697
Unique NameTCONS_00017697
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length583

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017697 ID=TCONS_00017697|Name=TCONS_00017697|organism=Clytia hemisphaerica|type=transcript|length=583bp
TTGACATCTCCAAGTTGATATGTGCAAACGTGGCAGTGATATCCAAAATT
GTTTCAACTCCGTAATTTAATTGTAACGTTTCGTACATGAAAAACAAGAG
AAAGTAGAAATTAACACCTGTCTTTGCCACCTTGCAAGGTTCTTTGTAGA
AGTTTGAAAATCGCTGATCGTCAAAATCTCAAGAATGACatgtaaagaaa
ataaaaatctgttCCGAAATAAATGACAATAAATCCTGTGTAGTTGCCTC
TGAATGgtaaagaaaaaatatagaaaaaatgtAAATGTAACTCTCATACC
TTGTAAGGTGGTATGTGCAACGAGGCATTGATACCACGATCAACAACAAG
CGATATATGCAACAACGACAGGGATATCTTTCAAAATAATAGGCGCAACG
AGGCAACCATATCTCTAAATTGATGCGTGCAACGAGGCATTGACATCTCC
AAGTTGATATGTGCAAACGTGGCAGTGATATCCAAAATTGTTTCAACTCC
GTAATTTAATTGTAACGTTTCGTACATGAAAAACAAGAGAAAGCAGAAAA
TAACACCTGTCTTTGCCACAGTGCAAAGTTCCT
Run BLAST on NCBI

transcript from alignment at sc0000273:345694..346276-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017697 ID=TCONS_00017697|Name=TCONS_00017697|organism=Clytia hemisphaerica|type=transcript|length=583bp|location=Sequence derived from alignment at sc0000273:345694..346276- (Clytia hemisphaerica)
TTGACATCTCCAAGTTGATATGTGCAAACGTGGCAGTGATATCCAAAATT
GTTTCAACTCCGTAATTTAATTGTAACGTTTCGTACATGAAAAACAAGAG
AAAGTAGAAATTAACACCTGTCTTTGCCACCTTGCAAGGTTCTTTGTAGA
AGTTTGAAAATCGCTGATCGTCAAAATCTCAAGAATGACATGTAAAGAAA
ATAAAAATCTGTTCCGAAATAAATGACAATAAATCCTGTGTAGTTGCCTC
TGAATGGTAAAGAAAAAATATAGAAAAAATGTAAATGTAACTCTCATACC
TTGTAAGGTGGTATGTGCAACGAGGCATTGATACCACGATCAACAACAAG
CGATATATGCAACAACGACAGGGATATCTTTCAAAATAATAGGCGCAACG
AGGCAACCATATCTCTAAATTGATGCGTGCAACGAGGCATTGACATCTCC
AAGTTGATATGTGCAAACGTGGCAGTGATATCCAAAATTGTTTCAACTCC
GTAATTTAATTGTAACGTTTCGTACATGAAAAACAAGAGAAAGCAGAAAA
TAACACCTGTCTTTGCCACAGTGCAAAGTTCCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009897XLOC_009897Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017697-exon-sc0000273-1575043694:345694..346276TCONS_00017697-exon-sc0000273-1575043694:345694..346276Clytia hemisphaericaexon
TCONS_00017697-exon-sc0000273-1510915933:345694..346276TCONS_00017697-exon-sc0000273-1510915933:345694..346276Clytia hemisphaericaexon
TCONS_00017697-exon-sc0000273-1491911889:345694..346276TCONS_00017697-exon-sc0000273-1491911889:345694..346276Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000273supercontigsc0000273:345694..346276 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.03129	3.9017	1.64936	2.76971	0.403625	0.565124	1.25913	1.62822	0.468757	0	0	1.01053	0.289976	0.213441	0.133818	0.557641	0.422658	0.636578	0.201677	0.487864	0.837378	0.544954	5.65337	5.52463	0.241982	0.280456	0.532252	0.245146	4.50318	4.88864
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017697 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top