TCONS_00017696 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017696
Unique NameTCONS_00017696
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length363

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017696 ID=TCONS_00017696|Name=TCONS_00017696|organism=Clytia hemisphaerica|type=transcript|length=363bp
CTCCAAGTTGATATGTGCAAACGTGGCAGTGATATCCAAAATTGTTTCAA
CTCCGTAATTTAATTGTAACGTTTCGTACCTTGTAAGGTGGTATGTGCAA
CGAGGCATTGATACCACGATCAACAACAAGCGATATATGCAACAACGACA
GGGATATCTTTCAAAATAATAGGCGCAACGAGGCAACCATATCTCTAAAT
TGATGCGTGCAACGAGGCATTGACATCTCCAAGTTGATATGTGCAAACGT
GGCAGTGATATCCAAAATTGTTTCAACTCCGTAATTTAATTGTAACGTTT
CGTACATGAAAAACAAGAGAAAGCAGAAAATAACACCTGTCTTTGCCACA
GTGCAAAGTTCCT
Run BLAST on NCBI

transcript from alignment at sc0000273:345694..346269-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017696 ID=TCONS_00017696|Name=TCONS_00017696|organism=Clytia hemisphaerica|type=transcript|length=576bp|location=Sequence derived from alignment at sc0000273:345694..346269- (Clytia hemisphaerica)
CTCCAAGTTGATATGTGCAAACGTGGCAGTGATATCCAAAATTGTTTCAA
CTCCGTAATTTAATTGTAACGTTTCGTACATGAAAAACAAGAGAAAGTAG
AAATTAACACCTGTCTTTGCCACCTTGCAAGGTTCTTTGTAGAAGTTTGA
AAATCGCTGATCGTCAAAATCTCAAGAATGACATGTAAAGAAAATAAAAA
TCTGTTCCGAAATAAATGACAATAAATCCTGTGTAGTTGCCTCTGAATGG
TAAAGAAAAAATATAGAAAAAATGTAAATGTAACTCTCATACCTTGTAAG
GTGGTATGTGCAACGAGGCATTGATACCACGATCAACAACAAGCGATATA
TGCAACAACGACAGGGATATCTTTCAAAATAATAGGCGCAACGAGGCAAC
CATATCTCTAAATTGATGCGTGCAACGAGGCATTGACATCTCCAAGTTGA
TATGTGCAAACGTGGCAGTGATATCCAAAATTGTTTCAACTCCGTAATTT
AATTGTAACGTTTCGTACATGAAAAACAAGAGAAAGCAGAAAATAACACC
TGTCTTTGCCACAGTGCAAAGTTCCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009897XLOC_009897Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017696-exon-sc0000273-1575043694:346191..346269TCONS_00017696-exon-sc0000273-1575043694:346191..346269Clytia hemisphaericaexon
TCONS_00017696-exon-sc0000273-1575043694:345694..345977TCONS_00017696-exon-sc0000273-1575043694:345694..345977Clytia hemisphaericaexon
TCONS_00017696-exon-sc0000273-1510915933:346191..346269TCONS_00017696-exon-sc0000273-1510915933:346191..346269Clytia hemisphaericaexon
TCONS_00017696-exon-sc0000273-1510915933:345694..345977TCONS_00017696-exon-sc0000273-1510915933:345694..345977Clytia hemisphaericaexon
TCONS_00017696-exon-sc0000273-1491911889:346191..346269TCONS_00017696-exon-sc0000273-1491911889:346191..346269Clytia hemisphaericaexon
TCONS_00017696-exon-sc0000273-1491911889:345694..345977TCONS_00017696-exon-sc0000273-1491911889:345694..345977Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000273supercontigsc0000273:345694..346269 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.97258	3.81085	3.29792	0.800101	0	0	0.320645	0.935494	1.28525	0.130196	0.968403	1.93818	0	2.60693e-06	0.0482386	0.461917	0	0	0	0	0	0.890295	5.47083	9.13966	0.401702	0.441496	0	3.87784	6.29952	2.78498
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017696 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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