TCONS_00017693 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00017693
Unique Name	TCONS_00017693
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	810

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000273:134628..138869-

transcript sequence

>TCONS_00017693 ID=TCONS_00017693|Name=TCONS_00017693|organism=Clytia hemisphaerica|type=transcript|length=810bp
TTATAGAGACCTCATTTATTGAAAGAgaattgaaaaatagaaaatttgaa
gttaAAGAAGAATGAACAAAgacgaagaagaagatgaagaggATTACATG
TCTGACAAATATCTCCTCAATGAAAGCAAACCTGGACTCATGCCCAAACT
CTTTCTTGATCGCCACAAACGAGGTGAATCATCCTCTTCCAAGAAGAAAA
ACACCCCAAAACCAAAACAAGACAAGCACCAGTCTGTTAAAGTCAAAGAA
CATGAGAATCGAAAAGAGAAACTTGATCAAGCTTTGGATGAATCAAATAA
AGGATTTGCAATGCTTGCCAGAATGGGATTCAAAAAAGGAATGGGTCTTG
GAAAGGAAGGTCAAGGACGGTCCGAACCAATTCCTATTGACATCAAGACT
GGTCGTGGAGGTGTTGGTAAAACATCAGAGGAAGAACGAAAGCGAACGAA
GCGTCTTGAAATGTACCGTATCAAAGCCAAAAGGCGtaaagaagatgaag
aaaatttgaaaggtGATTTCAAGTCAAGAATGAGAAGCAAAATCAACGAA
CGACAGGTTTTCGCTGACCTGTGCAAAAGCCAGAAAGCATGTCATCAATT
AGACCAGAAAAAGGGAATGGAAGAGCCGATTCAGTCATGGTATTGGACGA
AGCAACCTCTACAAGATGATGAAGAACAAGAAGTAGAAGAAGTTCAAGAT
GAAGTCGAAGAAGATGATAACGAGAAACTGGTCATTTTGACATGCTACTT
GCGAACTGAACATCGCTATTGTATTTGGTGTGGTATAACCTTCAATGACG
AGAATGATTT

Run BLAST on NCBI

transcript from alignment at sc0000273:134628..138869-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00017693 ID=TCONS_00017693|Name=TCONS_00017693|organism=Clytia hemisphaerica|type=transcript|length=4242bp|location=Sequence derived from alignment at sc0000273:134628..138869- (Clytia hemisphaerica)
TTATAGAGACCTCATTTATTGAAAGAGAATTGAAAAATAGAAAATTTGAA
GTTAAAGAAGAATGAACAAAGACGAAGAAGAAGATGAAGAGGATTACATG
TCTGACAAATATCTCCTCAATGAAAGCAAACCTGGACTCATGCCCAAACT
CTTTCTTGATCGCCACAAACGAGGTGAATCATCCTCTTCCAAGAAGAAAA
ACACCCCAAAACCAAAACAAGACAAGCACCAGTCTGTTAAAGTCAAAGAA
CATGAGAATCGAAAAGAGAAACTTGATCAAGCTTTGGATGAATCAAATAA
AGGATTTGCAATGCTTGCCAGAATGGGATTCAAAAAAGGAATGGGTCTTG
GAAAGGAAGGTTTGACGAGCTATTAAAGTCTGTCGAAATATAATTGGCAG
TGGCAATAAGAATGCCTGTAACTTTTGATAGTCAAATATAATTATGGAAT
TTTTTTTGCTTGTTTCATAGAAACAAAAGCGCTATATTTCCATGTATTTT
TGGTTGAAAAATTCGCGATTTTTAGCGGTTAAATTTGCGATTGTAAAAAT
TAAGCTTTTCTTCTACTTATGCTATAACGTTCATTTTACACCAGTGGTAG
TTCAACCTTAGGTTAAAAAGTTTGTTAAATTTCAAAGCGAACAAAAAACT
CCTTCGGAAGATATGGGACCCGAAATACTCCTTGGTAGCACTGCGAAATA
TCAAATCTCCAACTTATTACTAAAAACGGGCGTTATGTTATTTTTTTTTG
AAAAGTGCAATTAAAAGTTCGAAAGTGTTAAGTGTTGCTGCATGGAGGTA
ATAAAAATATAGATGGAGAGAAAACGTCTCGGTAATGATCTAAATGGTCG
TTGAAATCTTTTATAAATCTATTCAAAGCGGCTTTTCTCTGATTTACCAT
CATTGGAAGCAAAAAACATCAATTTATAATTTTATAAGAACAGAAAGAAA
CTGTTTGGTTGATTTTGAAAAACTTAATTTTGTCGAAAATCCTTGTTAAA
ATGCGATTCGAAATAGTTTCAACTGATGTAAGACTAAAAGAGTATGTTAA
TTTCATAAGGACACATTTTTGGGCTGGCATTTTGTTAACATTGAGAGTTG
CATCACATTATCATTGAAAGTTTCTTATCTTAAAATCTTCACGTCTAAGT
GGGCAACGGTTTTCATACTCTGACAAAATGATCGATACAAGGTACCTAAT
AGTAACACGTATTTCTTTTTTAAATCTATTGATGGCTTTATGGGCAGTTT
CCCCTAGAAGTTTGGAGTATTGTGCTTATTATGTGAAGTTTTTTTCAATT
TTTCATGACAAGGCTATTATATTTCAATATACTTGTTAAAAATGTAATGT
CTTTTCATTCATCTTAAATATTCCCACGAGTATACCCAAAATTAGTCATC
TTATTCCCAAAGCTATTAAAAGTTACAGGCATTCTTGTTTCCACTGCCAA
TTATATCCGGACAGACTTTAGTTATCCTGCATTTTTTAAAATGAAGATGA
ACTTTCCTCAAGTCTGTGATTTTTTTTTATTGTCCAATGAGTCTATCCAA
ATGAAATTGTTTTTTACGACCATTTTGCTTCGTTTACTAGTGAGTCAATA
TAAGTTGAGCTTAAGTATTACTGTTAAATAAGCTTTTTTCATTTCTGTTT
AGGTCAAGGACGGTCCGAACCAATTCCTATTGACATCAAGACTGGTATGT
AATTCAAATTCATTCGACTTTCCATCATGAGAAATGGAGTTCTATTCGAC
ACTATACACCAAAGCTATTCTACTTGTGATAGGCCAAAATAATGCTTCTC
AATACTTGAAACACCTCATTAAATTTATGCAGGGATTTTTCTAAGCACTG
AGCTGGGGCCGTTTTTGTAAATTTAGATTGAGTTTCTAATGCCTGAAAAA
TTGGCATCATTGATGAAGCTGGGGGTCTGAGGGCGCTTTGAAGCCCCCNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNGGGGGGGGGGGGGGGTAGTGGGTTCAGA
GGGCTAAGCTCTCAAAAAATGAATATGTAGATTGTATTAGTTATTTTTGC
GTGTAAATTCAAGAACTCAATCTTCGACTGTGAGTATTTTGGCCGGTATA
CGGACATAAAAATGTGCTTAGAAAATCCCTGTTAGCATATCCTTGACGTA
TTGTTTTCAAAGGAAACAACTTTGATTTTGCTAGTGGCGAATCTAGTTAA
GAGAAAAATTGTTTAAAATTTGCTACTCCTGGAAAGAACCGGTGTGTTTC
TATAGAAAACATTACGTCATTGATATCTACCATTCTAGGTCGTGGAGGTG
TTGGTAAAACATCAGAGGAAGAACGAAAGCGAACGAAGCGTCTTGAAATG
TACCGTATCAAAGCCAAAAGGCGTAAAGAAGATGAAGAAAATTTGAAAGG
TGATTTCAAGTCAAGAATGAGAAGCAAAATCAACGAACGACAGGTTTTCG
CTGACCTGTGCAAAAGCCAGAAAGCATGTCATCAATTAGACCAGAAAAAG
GTAATGCTATGGATTATAGGTCAACCAAAGTTCTTATTCTCAACCTCAGT
TGAGCTAGAATCTGGACATGTCCATCTGTCACAAAAACTTTAGGACAGCT
TGGTAATTTCAAAAATTGTCAAATTTTACTTTAAGTTTGGTGCACACACT
TGATCTGACGCAAATATAGTACAACTTTTACAATGGATTCTTCGAATAAT
TTGGAGCTTTAGAACTTGAGTGCGTTGTTCCTGGTTGTTCGAGTGTACTC
TCGGGTACCTAATAGCCGGGGGGTTTGGAATAAGCAGGGGGGTTGGAAAA
AATCTCAAAATTTAATAAGCGGGGGGGGGGGTTGGAATAAAAATGTCCTG
GGTGGAAAATGTTCGAAAAGGAGGCTGATACAGCAGAATTAGGGCAAAAG
AGGTAACTTTCAAAAACAATTTTCCCAAAAATCAATAAGCGGGGAGGGGG
GGTGGAATAAGGATGTCCTGAGTGGAAAATTTTCGAAAAATTAATTAGCG
GGCCCCCCCGGCTATTAGGTACCCGGGGGAAGTTGATATCTCTATTTATC
TGTTGTAAAACATTACTTCCTTTGTAATTTATTAAGAGCACTGTAGATTA
TCCAGTTCTTCATGTACATCTATAGGGAATGGAAGAGCCGATTCAGTCAT
GGTATTGGACGAAGCAACCTCTACAAGATGATGAAGAACAAGAAGTAGAA
GAAGTTCAAGATGAAGTCGAAGAAGATGTGAGTGCAACCAAATTCTTCCA
AAAGCATTTATCATTTCTTTCATTAAAATTTTCAAAGGTTGCCAATGACT
CTCCAGTATGATGCAGATGGCCTGTTCAAGAAAGGTGTATACACGTTTTT
TAAAGAACATCCACAATTTTTGAAGCCTACGGGTGCTACTAGAACTTTTT
GAGTTTCAAGCCTTAAAATGTTCACAACCTGTTCTTATTTTCACCTTTCG
CGATTATTTTTGTGCATTTTCCTAAGAAATTGGGTGTTTTAGAGTCAGGA
AAGCCTTCTTAAAATTTTCTTGATTTGTTCTTAATATTTTGGTCTTCGAA
CTCTTATGTTCTTATATAGTTTATTGTTCTTGTAAGATGTCTTTGCCAGT
TCTTTCTTAGGATAACGAGAAACTGGTCATTTTGACATGCTACTTGCGAA
CTGAACATCGCTATTGTATTTGGTGTGGTATAACCTTCAATGGTAAGTGA
GGTGCCATGTTTCATTTACTCATCCATTTGAGAAATTCGACAAAAATTGG
CCTAAATTTTAAAAGTTTTATGTCAAAATTTAATTTCAACTGCCCGCCTC
NTTTTTTTTTGAATTTTTACTTCGACAACAAGTGGCCTAAATTTTAAAAG
TTTTATGTCAAAATTTAATTTCAACTGCCCGCCTCTTTCTTATAAAATTA
AGTATATTTTTAGTCTCGACCGCGGCCGAGCAATGATGATAATGTAGATG
ATAAAAGTAACGCAATCAATACTCAGCGATCAATACTCAGCAGTTTCTTT
TAGTCACTCGGCAGTATTAAGCCGCGATGGTGCGTTTATGGTAAATTAAG
TCGACGTAGGTCATCTTTAGTTAGCAGAGGTGACTCGTTGATAATAGTAT
TGTGTACGTAATATTCTCCTTCTCTTTAGACGAGAATGATTT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_009894	XLOC_009894	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000273	supercontig	sc0000273:134628..138869 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
26.9499	25.409	46.3836	54.6197	10.5728	10.3977	4.35832	11.1256	9.52923	11.5696	9.13644	7.36052	0	0	7.03918	7.61243	14.9024	7.84726	0	0	0	0	0	0	0	0	2.03495	0.11308	1.15517	1.37948

Blast

[Close]

BLAST of TCONS_00017693 vs. Swiss-Prot (Human)
Match: GPT11 (G patch domain-containing protein 11 OS=Homo sapiens GN=GPATCH11 PE=1 SV=3)

HSP 1 Score: 153.68 bits (387), Expect = 2.297e-44
Identity = 94/244 (38.52%), Postives = 147/244 (60.25%), Query Frame = 2

Query:   95 YMSDKYL--LNESKPGLMPKLFLDRHKRGEXXXXXXXNTPKPKQDKHQSVKVKEHENRKEKLDQALDESNKGFAMLARMGFKKGMGLGKEGQGRSEPIPIDIKTGRGGVGKTSEEERKRTKRLEMYRIKAKRRKEDEENLKGDFKSRMRSKINERQVFADLCKSQKACHQLDQKKGMEEPIQSWYWTKQPLXXXXXXXXXXXXXXXXXXXN----EKLVILTCYLRTEHRYCIWCGITFNDEND 808
            YMSD ++    + +PGL P L   R  R +    ++ N     +++ +S+K +E E R   L  AL   NKGFA+L +MG+K G  LGK G G  EPIP++IKTG+ G+G  +  +RK  ++LE YR K   + + EE     F+ R+++K +E ++  DL +SQ+AC QLD +K ++ P ++WYW +   + +E++E +E  ++  + ++    EKL ILT YLR EH YCIWCG  + D+ D
Sbjct:    7 YMSDSFINVQEDIRPGL-PMLRQIREARRKEEKQQEANL----KNRQKSLKEEEQERRDIGLKNALGCENKGFALLQKMGYKSGQALGKSGGGIVEPIPLNIKTGKSGIGHEASLKRKAEEKLESYRKKIHMKNQAEEKAAEQFRMRLKNKQDEMKLEGDLRRSQRACQQLDVQKNIQVPREAWYWLRLEEETEEDEEEKEQDEDEYKSEDLSVLEKLQILTSYLREEHLYCIWCGTAYEDKED 245

The following BLAST results are available for this feature:

BLAST of TCONS_00017693 vs. Swiss-Prot (Human)

BLAST of TCONS_00017693 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
GPT11	2.297e-44	38.52	G patch domain-containing protein 11 OS=Homo sapie...	[more]

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TCONS_00017693 (transcript) - C. hemisphaerica