TCONS_00017687 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017687
Unique NameTCONS_00017687
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1115

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017687 ID=TCONS_00017687|Name=TCONS_00017687|organism=Clytia hemisphaerica|type=transcript|length=1115bp
TTTTCTTTCGAAACTTTTCTCGATCTAAAGCCTTTAGACACATCATTTTG
ATACAACAGcaagaaaacaaaattcaaatcaatTATGGATCTGGATTCTA
ACAGCAAGAAGACTGACGTTTTTTTATCCCACAATTGGGGAAGGAATGgc
gaaaatcatcaaaaagtggCGAAAATCAATGAAGCACTCCAAGAGCTTGG
ATATGTCACTTGGTTTGATGACAAAGAAATGTATGGAGATATTAGAGCCC
GAATGGCTGATGGaatcaaaaacacaaaatgtTGTCTTGCATTTTTAACG
GAAGAATATCATCAAAAAGTTGTCTATGGCCGAGAATCGGATAATTGTAA
ATCCGAGTTTGATTTTGCCAGTACGACAGTACCAGTTCGAGCTGTGGTTC
TTGAAGAAAGTATGACAAACCCTCACACGTGGGAAGGGAACATTGCAATC
ACTTTGAAGATCAAATTTTATGTCGATATGTCAGGCAATATTGATGGTCG
TGAATACTTTGCAGAGAAAATGCAGCAGTTGAAGAAAGAACTGGATAAGA
TTATTTTGACAACTCAAGCTACTACACCAACGGAAGTCGATCAAAATTTC
GTCGACGTCGAAATCGAAGAACTGAAGAATTTGGTGTTTCAACTgcttga
agatgaaaaatacgAAGAAGCCATTCCTCATCTGCAGCTCCTGGTAACAA
AACAAACATCATTTCTCGGACACTCACACCCGGACACACTCTTCGCTCTT
CAAAAACTTGCCTATTGttataaagaagaagaagagtaTGAAAAAGCTAT
TCCTACGTATgaagatttgatgaaaaaacaGACAGAAACTTTTGGAAAGG
AACACGTTGATACAATGTCAAGCAAATATGAATTGGCAACTTGTTTATTC
TTTAATAAACAGGAAAGTAAAGCCATTCCAATTTGTGAAGAGCTGATTGA
GATGAGAAAAATATTGTCCGGCGAGCTACACGAAGGAACGTTTTTAGTGA
AAGTGCGACATGCAATTTGCTTCATTGATAGTAATATAGAAAAGGCAACC
TCAATGTTACAAGAGCTCGTGACGAAGCAAAAATTAGTGTTAGGTCTCAT
GCATAAAAATACTAT
Run BLAST on NCBI

protein sequence of TCONS_00017687-protein

>TCONS_00017687-protein ID=TCONS_00017687-protein|Name=TCONS_00017687-protein|organism=Clytia hemisphaerica|type=polypeptide|length=343bp
MDLDSNSKKTDVFLSHNWGRNGENHQKVAKINEALQELGYVTWFDDKEMY
GDIRARMADGIKNTKCCLAFLTEEYHQKVVYGRESDNCKSEFDFASTTVP
VRAVVLEESMTNPHTWEGNIAITLKIKFYVDMSGNIDGREYFAEKMQQLK
KELDKIILTTQATTPTEVDQNFVDVEIEELKNLVFQLLEDEKYEEAIPHL
QLLVTKQTSFLGHSHPDTLFALQKLAYCYKEEEEYEKAIPTYEDLMKKQT
ETFGKEHVDTMSSKYELATCLFFNKQESKAIPICEELIEMRKILSGELHE
GTFLVKVRHAICFIDSNIEKATSMLQELVTKQKLVLGLMHKNT
Run BLAST on NCBI

transcript from alignment at sc0000273:109053..110343-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017687 ID=TCONS_00017687|Name=TCONS_00017687|organism=Clytia hemisphaerica|type=transcript|length=1291bp|location=Sequence derived from alignment at sc0000273:109053..110343- (Clytia hemisphaerica)
TTTTCTTTCGAAACTTTTCTCGATCTAAAGCCTTTAGACACATCATTTTG
ATACAACAGCAAGAAAACAAAATTCAAATCAATTATGGATCTGGATTCTA
ACAGCAAGAAGACTGACGTTTTTTTATCCCACAATTGGGGAAGGAATGGC
GAAAATCATCAAAAAGTGGCGAAAATCAATGAAGCACTCCAAGAGCTTGG
ATATGTCACTTGGTTTGATGACAAAGAAATGTATGGAGATATTAGAGCCC
GAATGGCTGATGGAATCAAAAACACAAAATGTTGTCTTGCATTTTTAACG
GAAGAATATCATCAAAAAGTTGTCTATGGCCGAGAATCGGATAATTGTAA
ATCCGAGTTTGATTTTGCCAGTACGACAGTACCAGTTCGAGCTGTGGTTC
TTGAAGAAAGTATGACAAACCCTCACACGTGGGAAGGGAACATTGCAATC
ACTTTGAAGATCAAATTTTATGTCGATATGTCAGGCAATATTGATGGTCG
TGAATACTTTGCAGAGAAAATGCAGCAGTTGAAGAAAGAACTGGATAAGA
TTATTTTGACAACTCAAGCTACTACACCAACGGAAGGTATTTCAAATAGT
TGTACTGTAATTTTAGCATTACTGCATTTCTCGATTGGTTTGATTTGTTT
TGTGTGCTCAGCCTAGATTGAAAATGATTTGTCTTCAGATTGCTCTTTTT
TCTTCAATAGCCATATACCTTCCTTGTATAATATTAACGCTGGAATTTTC
TCCGGTTTTTAGTCGATCAAAATTTCGTCGACGTCGAAATCGAAGAACTG
AAGAATTTGGTGTTTCAACTGCTTGAAGATGAAAAATACGAAGAAGCCAT
TCCTCATCTGCAGCTCCTGGTAACAAAACAAACATCATTTCTCGGACACT
CACACCCGGACACACTCTTCGCTCTTCAAAAACTTGCCTATTGTTATAAA
GAAGAAGAAGAGTATGAAAAAGCTATTCCTACGTATGAAGATTTGATGAA
AAAACAGACAGAAACTTTTGGAAAGGAACACGTTGATACAATGTCAAGCA
AATATGAATTGGCAACTTGTTTATTCTTTAATAAACAGGAAAGTAAAGCC
ATTCCAATTTGTGAAGAGCTGATTGAGATGAGAAAAATATTGTCCGGCGA
GCTACACGAAGGAACGTTTTTAGTGAAAGTGCGACATGCAATTTGCTTCA
TTGATAGTAATATAGAAAAGGCAACCTCAATGTTACAAGAGCTCGTGACG
AAGCAAAAATTAGTGTTAGGTCTCATGCATAAAAATACTAT

Coding sequence (CDS) from alignment at sc0000273:109053..110343-

>TCONS_00017687 ID=TCONS_00017687|Name=TCONS_00017687|organism=Clytia hemisphaerica|type=CDS|length=2058bp|location=Sequence derived from alignment at sc0000273:109053..110343- (Clytia hemisphaerica)
TCGATCAAAATTTCGTCGACGTCGAAATCGAAGAACTGAAGAATTTGGTG
TTTCAACTGCTTGAAGATGAAAAATACGAAGAAGCCATTCCTCATCTGCA
GCTCCTGGTAACAAAACAAACATCATTTCTCGGACACTCACACCCGGACA
CACTCTTCGCTCTTCAAAAACTTGCCTATTGTTATAAAGAAGAAGAAGAG
TATGAAAAAGCTATTCCTACGTATGAAGATTTGATGAAAAAACAGACAGA
AACTTTTGGAAAGGAACACGTTGATACAATGTCAAGCAAATATGAATTGG
CAACTTGTTTATTCTTTAATAAACAGGAAAGTAAAGCCATTCCAATTTGT
GAAGAGCTGATTGAGATGAGAAAAATATTGTCCGGCGAGCTACACGAAGG
AACGTTTTTAGTGAAAGTGCGACATGCAATTTGCTTCATTGATAGTAATA
TAGAAAAGGCAACCTCAATGTTACAAGAGCTCGTGACGAAGCAAAAATTA
GTGTTAGGTCTCATGCATAAAAATACTATGGATCTGGATTCTAACAGCAA
GAAGACTGACGTTTTTTTATCCCACAATTGGGGAAGGAATGGCGAAAATC
ATCAAAAAGTGGCGAAAATCAATGAAGCACTCCAAGAGCTTGGATATGTC
ACTTGGTTTGATGACAAAGAAATGTATGGAGATATTAGAGCCCGAATGGC
TGATGGAATCAAAAACACAAAATGTTGTCTTGCATTTTTAACGGAAGAAT
ATCATCAAAAAGTTGTCTATGGCCGAGAATCGGATAATTGTAAATCCGAG
TTTGATTTTGCCAGTACGACAGTACCAGTTCGAGCTGTGGTTCTTGAAGA
AAGTATGACAAACCCTCACACGTGGGAAGGGAACATTGCAATCACTTTGA
AGATCAAATTTTATGTCGATATGTCAGGCAATATTGATGGTCGTGAATAC
TTTGCAGAGAAAATGCAGCAGTTGAAGAAAGAACTGGATAAGATTATTTT
GACAACTCAAGCTACTACACCAACGGAAGTCGATCAAAATTTCGTCGACG
TCGAAATCGAAGAACTGAAGAATTTGGTGTTTCAACTGCTTGAAGATGAA
AAATACGAAGAAGCCATTCCTCATCTGCAGCTCCTGGTAACAAAACAAAC
ATCATTTCTCGGACACTCACACCCGGACACACTCTTCGCTCTTCAAAAAC
TTGCCTATTGTTATAAAGAAGAAGAAGAGTATGAAAAAGCTATTCCTACG
TATGAAGATTTGATGAAAAAACAGACAGAAACTTTTGGAAAGGAACACGT
TGATACAATGTCAAGCAAATATGAATTGGCAACTTGTTTATTCTTTAATA
AACAGGAAAGTAAAGCCATTCCAATTTGTGAAGAGCTGATTGAGATGAGA
AAAATATTGTCCGGCGAGCTACACGAAGGAACGTTTTTAGTGAAAGTGCG
ACATGCAATTTGCTTCATTGATAGTAATATAGAAAAGGCAACCTCAATGT
TACAAGAGCTCGTGACGAAGCAAAAATTAGTGTTAGGTCTCATGCATAAA
AATACTATGGATCTGGATTCTAACAGCAAGAAGACTGACGTTTTTTTATC
CCACAATTGGGGAAGGAATGGCGAAAATCATCAAAAAGTGGCGAAAATCA
ATGAAGCACTCCAAGAGCTTGGATATGTCACTTGGTTTGATGACAAAGAA
ATGTATGGAGATATTAGAGCCCGAATGGCTGATGGAATCAAAAACACAAA
ATGTTGTCTTGCATTTTTAACGGAAGAATATCATCAAAAAGTTGTCTATG
GCCGAGAATCGGATAATTGTAAATCCGAGTTTGATTTTGCCAGTACGACA
GTACCAGTTCGAGCTGTGGTTCTTGAAGAAAGTATGACAAACCCTCACAC
GTGGGAAGGGAACATTGCAATCACTTTGAAGATCAAATTTTATGTCGATA
TGTCAGGCAATATTGATGGTCGTGAATACTTTGCAGAGAAAATGCAGCAG
TTGAAGAAAGAACTGGATAAGATTATTTTGACAACTCAAGCTACTACACC
AACGGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009893XLOC_009893Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017687-proteinTCONS_00017687-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017687-exon-sc0000273-1575043694:109758..110343TCONS_00017687-exon-sc0000273-1575043694:109758..110343Clytia hemisphaericaexon
TCONS_00017687-exon-sc0000273-1575043694:109053..109581TCONS_00017687-exon-sc0000273-1575043694:109053..109581Clytia hemisphaericaexon
TCONS_00017687-exon-sc0000273-1510915933:109758..110343TCONS_00017687-exon-sc0000273-1510915933:109758..110343Clytia hemisphaericaexon
TCONS_00017687-exon-sc0000273-1510915933:109053..109581TCONS_00017687-exon-sc0000273-1510915933:109053..109581Clytia hemisphaericaexon
TCONS_00017687-exon-sc0000273-1491911889:109758..110343TCONS_00017687-exon-sc0000273-1491911889:109758..110343Clytia hemisphaericaexon
TCONS_00017687-exon-sc0000273-1491911889:109053..109581TCONS_00017687-exon-sc0000273-1491911889:109053..109581Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000273supercontigsc0000273:109053..110343 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0391587	0.0381859	0.0886749	0.0867545	0.422461	0.333834	1.71172	2.07381	1.15494	0.858347	2.69776	1.17358	4.92216	3.48895	4.53606	6.77686	2.49868	1.53664	6.24398	4.74795	0.795077	0.775621	1.52655	1.14294	0.924944	1.23824	0	0.114608	0.56502	0.66423
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011991WHTH_DNA-bd_dom
IPR000157TIR_dom
IPR011990TPR-like_helical_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: Biological Process
TermDefinition
GO:0007165signal transduction
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007165 signal transduction
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017687 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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