TCONS_00017674 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00017674
Unique Name	TCONS_00017674
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1351

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000273:215332..218356+
coding sequence from alignment at sc0000273:215332..218356+

transcript sequence

>TCONS_00017674 ID=TCONS_00017674|Name=TCONS_00017674|organism=Clytia hemisphaerica|type=transcript|length=1351bp
AGTGGATTTaaaaatttatgtaatttaCGATTAAACTATATGCAtttcag
tttaaaaaaatggaCAGGAATTCAGGATTAGACGATTTAGTAAATGTTTC
AATTGATATGCTTTATTCAGAGCAAGAGGCTCAAGTTGCTGCCCAAGCAA
TAGCACCAGAAAATGAAGCTAGTAATAAAACTAAATCTGGTAAAAAGATG
ATTGGATGTCCAATTTGTGGCATTGAATATGCAACATTATATAATCTCAA
AAGACATATGGCTACAAAACACAAGGATGTACCAATACCAGACACTCTTA
GTAGAGGAAACACTAAATGTTTGGAATGTAATGCtcgattttatcaaaca
aaagaaTTGGTGAAACATTTAGAATCAGAGCATAAGATGGAATTTCAGAT
TGAAACGCTCACTTTTCGAGACCTAGAAGAATTTGATGCATGGAAAGATA
ATTACGAGAAGACAAACCACTGTTATTATATTGCTTATGGGTCACGATGG
GATGATGATCCTGGGAAGAATTTCAAAGATTTCCGATGCAATCGAAGTGG
TTGGTACAGAAGTAAAAAATCCAATGATGAACCAAgacaaaggaaaatga
aaagtgCAGGGTCAAACAAGATCGGAAATAATTGTACATCAACAATAAAA
TTGAGAGACAAAGTAGATGGAACACTTCAAGCTACCATCAACATGACACA
TTACTCccatgaaattgaaataaaacatGTGTCAAGAAAagTAAGAGATT
ACAATATTGAACAGGGGACTACAGATTATATTTATCCTGATACAAAGTCT
GTTAAACGTGCATACAAACGCAGAGtAACTCCAGCACAACGCGAAGAATT
AAGTAATGTGAAATACCAAATTCAAGCTGAACTTTTAAAGATACAAGAAC
TTGTAGAAGGAAGCTCAGTGAGCAATTTGCAGAATATACAAATGCTTTAC
AATAGACTTCAAACGGCTAGGACTGTATATGAGGAAACAAATGTACCTTA
GCTGACCTTGTTTATGTTTAACTTATTATGTCAACtataatttgacaaat
ttttgtCAAGAGTGTTGTGTCctttttgtgcatttttttCCTTCATACAA
ATTGTATATAGTTGAAAGAAGTATGAAAATTGTTGTTCAAAAAAGGGGCT
TAAGTACGTGAAGTACAAAAATTTAATACTTTATGTTGTTAATGAATAGT
TGGTTTTGTCATACACAACTGCAATTCTTTCAAGGAGTTACCTTAAAATA
TTACTTGGGTTAAAATTTGGTGGATTTCTTGGTTTTAGgccaaatccacc
aaatttaatacctgccaaaattaaattaatttttcttttattcacaTTTA
G

Run BLAST on NCBI

protein sequence of TCONS_00017674-protein

>TCONS_00017674-protein ID=TCONS_00017674-protein|Name=TCONS_00017674-protein|organism=Clytia hemisphaerica|type=polypeptide|length=313bp
MDRNSGLDDLVNVSIDMLYSEQEAQVAAQAIAPENEASNKTKSGKKMIGC
PICGIEYATLYNLKRHMATKHKDVPIPDTLSRGNTKCLECNARFYQTKEL
VKHLESEHKMEFQIETLTFRDLEEFDAWKDNYEKTNHCYYIAYGSRWDDD
PGKNFKDFRCNRSGWYRSKKSNDEPRQRKMKSAGSNKIGNNCTSTIKLRD
KVDGTLQATINMTHYSHEIEIKHVSRKVRDYNIEQGTTDYIYPDTKSVKR
AYKRRVTPAQREELSNVKYQIQAELLKIQELVEGSSVSNLQNIQMLYNRL
QTARTVYEETNVP

Run BLAST on NCBI

transcript from alignment at sc0000273:215332..218356+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00017674 ID=TCONS_00017674|Name=TCONS_00017674|organism=Clytia hemisphaerica|type=transcript|length=3025bp|location=Sequence derived from alignment at sc0000273:215332..218356+ (Clytia hemisphaerica)
AGTGGATTTaaaaatttatgtaatttaCGATTAAACTATATGCAtttcag
tttaaaaaaatggaCAGGAATTCAGGATTAGACGATTTAGTAAATGTTTC
AATTGATATGCTTTATTCAGAGCAAGAGGCTCAAGTTGCTGCCCAAGCAA
TAGCACCAGAAAATGAAGCTAGTAATAAAACTAAATCTGGTAAAAAGATG
ATTGGATGTCCAATTTGTGGCATTGAATATGCAACATTATATAATCTCAA
AAGACATATGGCTACAAAACACAAGGATGTACCAATACCAGACACTCTTA
GTAGAGGAAACACTAAATGTTTGGAATGTAATGCtcgattttatcaaaca
aaagaaTTGGTGAAACATTTAGAATCAGAGCATAAGATGGAATTTCAGAT
TGAAACGCTCACTTTTCGAGACCTAGAAGGTAGGTgtttggccaaaaatt
gtttTAGTAATCATTACCACTTTAATTATATGGCTGATGACATTTAGCTT
AGAAATGTAATGTAGTAGCGGGGTGATTAATCCGTAATAAATAGCCCTGC
TGTAATCACCCcacgaaaagaaaaaaagaaaatcttcgaaCTATTATTCC
CCAAATCACCCTCCAAACCATATTATTACAAGTACAaatcaattgttgaa
atcaaCGTAACACAATAAGTTGTATAGATCTCGCAATAGTTTTTTTACCA
TtaataaaacaataaatataAGTGATTTACCAAATGACTTAAATTATGAC
CAATATTGAAAGCGGATGGTGTTTTTACCCTTTTAACCTTTCTCGTAATA
ATTGGCCATTACTTAGGGATATTGAACATATATAACAGTTAGTAATATGA
ATATTTTCCTGTTAATCTGAACCATCTCATCATCTATTGAGAACTTTGAG
AATTAAAAGAATAGGAAAAAGGAAGATTTTTCTTACTTGCTCAAGTTGAA
CACATAAAATCAGCTAGGTCCATAATTCCAAACATTGTCATGTCATGATT
TTAaagtaaataacaaaaattttcattttcctaatttttttgaaaaatct
taaaatacgtttttaatttagaaattttcaatgcACATTCTTTTAAGACA
GACGTATTTTAAGACTCTATATTTTGTATTGTTCTTAAGAAAAAACCTTC
TTTGTCTCGCAATATTTCTAGAATTTGATGCATGGAAAGATAATTACGAG
AAGACAAACCACTGTTATTATATTGCTTATGGGTCACGATGGGATGATGA
TCCTGGGAAGAATTTCAAAGATTTCCGATGCAATCGAAGTGGTTGGTACA
GAAGTAAAAAATCCAATGATGAACCAAgacaaaggaaaatgaaaagtgCA
GGCAAGTTTTCTTTATTACACGAAAATAAGTAGACATGTAATTAACACGG
ATTAAGAAATTTTGTGTTAATTAAAACCcctttaattaaaaccagccgtg
gtatcctcgaaaaagcaaataaaattcatgttaaattttttgcgtgttaa
tttcaaggccgttgaatccttgcctagtaatatttgtgtaataaggcAAA
ATTGTTTGCTCGTTACTCTAAAACTTAAAATCATTGAAGCAATCACAAAC
TAGAAATTAGGATGTTGAACATTTAGTAATGATTTCTAATTTAGTTAACA
CGGTCAAATGTTAGCTTTTAAATTAGTGTGTATTATTCACCAAGACTAAG
AGATGTCACTACTGCTACAAGAAATCTGATTATAATCCTCTTATTTTTCA
GGGTCAAACAAGATCGGAAATAATTGTACATCAACAATAAAATTGAGAGA
CAAAGTAGATGGAACACTTCAAGCTACCATCAACATGACACATTACTCcc
atgaaattgaaataaaacatGTGTCAAGAAAGTTTGTAATTTTCATTATA
AAGATCTACCTTTTATAGTCTTAACTAATCTTATGCAACATATTAAAATC
TTGCTCCTTTTTGGTAGTTTTGTCAATTTGGGTGTTAATTTATAATTaat
ttaaatcaatttattttgtatttttcagagTAAGAGATTACAATATTGAA
CAGGGGACTACAGATTATATTTATCCTGATACAAAGTCTGTTAAACGTGC
ATACAAACGCAGAGGTATGTTGATATCTAGAATTAATGACTTACTTGTCT
TTGTATGATacagggcccggttgttcaaaagtcgaTCAGATTAAATCCCG
ATTAACACTAATCGAGATTAGATTTTGATTTAAGCCTATTTTTTCGAACA
ACCAGGCCCAGAATATTGATTGCCTAACTTCTTTTTGAACCAAGAACCTA
CTTTATCTGAAAGTCAGCAAATTCGTTTGATAAGGAATCAgcccaaatac
gaaaatttcCTTCCCTCAAAATAGATATTTCAAaccaatttttaaatttg
gagaaactttgtaattaaaagtttttttattgtggGGTACCCAGTAAAAT
CCCCAACAACTAAATGTTATAATCATATCagttgatttttgtttttcagt
AACTCCAGCACAACGCGAAGAATTAAGTAATGTGAAATACCAAATTCAAG
CTGAACTTTTAAAGATACAAGAACTTGTAGAAGGAAGCTCAGTGAGCAAT
TTGCAGAATATACAAATGCTTTACAATAGACTTCAAACGGCTAGGACTGT
ATATGAGGAAACAAATGTACCTTAGCTGACCTTGTTTATGTTTAACTTAT
TATGTCAACtataatttgacaaatttttgtCAAGAGTGTTGTGTCctttt
tgtgcatttttttCCTTCATACAAATTGTATATAGTTGAAAGAAGTATGA
AAATTGTTGTTCAAAAAAGGGGCTTAAGTACGTGAAGTACAAAAATTTAA
TACTTTATGTTGTTAATGAATAGTTGGTTTTGTCATACACAACTGCAATT
CTTTCAAGGAGTTACCTTAAAATATTACTTGGGTTAAAATTTGGTGGATT
TCTTGGTTTTAGgccaaatccaccaaatttaatacctgccaaaattaaat
taatttttcttttattcacaTTTAG

Coding sequence (CDS) from alignment at sc0000273:215332..218356+

>TCONS_00017674 ID=TCONS_00017674|Name=TCONS_00017674|organism=Clytia hemisphaerica|type=CDS|length=4710bp|location=Sequence derived from alignment at sc0000273:215332..218356+ (Clytia hemisphaerica)
atggaCAGGAATTCAGGATTAGACGATTTAGTAAATGTTTCAATTGATAT
GCTTTATTCAGAGCAAGAGGCTCAAGTTGCTGCCCAAGCAATAGCACCAG
AAAATGAAGCTAGTAATAAAACTAAATCTGGTAAAAAGATGATTGGATGT
CCAATTTGTGGCATTGAATATGCAACATTATATAATCTCAAAAGACATAT
GGCTACAAAACACAAGGATGTACCAATACCAGACACTCTTAGTAGAGGAA
ACACTAAATGTTTGGAATGTAATGCtcgattttatcaaacaaaagaaTTG
GTGAAACATTTAGAATCAGAGCATAAGATGGAATTTCAGATTGAAACGCT
CACTTTTCGAGACCTAGAAGAATTTGATGCATGGAAAGATAATTACGAGA
AGACAAACCACTGTTATTATATTGCTTATGGGTCACGATGGGATGATGAT
CCTGGGAAGAATTTCAAAGATTTCCGATGCAATCGAAGTGGTTGGTACAG
AAGTAAAAAATCCAATGATGAACCAAgacaaaggaaaatgaaaagtgCAG
GGTCAAACAAGATCGGAAATAATTGTACATCAACAATAAAATTGAGAGAC
AAAGTAGATGGAACACTTCAAGCTACCATCAACATGACACATTACTCcca
tgaaattgaaataaaacatGTGTCAAGAAAagTAAGAGATTACAATATTG
AACAGGGGACTACAGATTATATTTATCCTGATACAAAGTCTGTTAAACGT
GCATACAAACGCAGAGtAACTCCAGCACAACGCGAAGAATTAAGTAATGT
GAAATACCAAATTCAAGCTGAACTTTTAAAGATACAAGAACTTGTAGAAG
GAAGCTCAGTGAGCAATTTGCAGAATATACAAATGCTTTACAATAGACTT
CAAACGGCTAGGACTGTATATGAGGAAACAAATGTACCTTAGatggaCAG
GAATTCAGGATTAGACGATTTAGTAAATGTTTCAATTGATATGCTTTATT
CAGAGCAAGAGGCTCAAGTTGCTGCCCAAGCAATAGCACCAGAAAATGAA
GCTAGTAATAAAACTAAATCTGGTAAAAAGATGATTGGATGTCCAATTTG
TGGCATTGAATATGCAACATTATATAATCTCAAAAGACATATGGCTACAA
AACACAAGGATGTACCAATACCAGACACTCTTAGTAGAGGAAACACTAAA
TGTTTGGAATGTAATGCtcgattttatcaaacaaaagaaTTGGTGAAACA
TTTAGAATCAGAGCATAAGATGGAATTTCAGATTGAAACGCTCACTTTTC
GAGACCTAGAAGAATTTGATGCATGGAAAGATAATTACGAGAAGACAAAC
CACTGTTATTATATTGCTTATGGGTCACGATGGGATGATGATCCTGGGAA
GAATTTCAAAGATTTCCGATGCAATCGAAGTGGTTGGTACAGAAGTAAAA
AATCCAATGATGAACCAAgacaaaggaaaatgaaaagtgCAGGGTCAAAC
AAGATCGGAAATAATTGTACATCAACAATAAAATTGAGAGACAAAGTAGA
TGGAACACTTCAAGCTACCATCAACATGACACATTACTCccatgaaattg
aaataaaacatGTGTCAAGAAAagTAAGAGATTACAATATTGAACAGGGG
ACTACAGATTATATTTATCCTGATACAAAGTCTGTTAAACGTGCATACAA
ACGCAGAGtAACTCCAGCACAACGCGAAGAATTAAGTAATGTGAAATACC
AAATTCAAGCTGAACTTTTAAAGATACAAGAACTTGTAGAAGGAAGCTCA
GTGAGCAATTTGCAGAATATACAAATGCTTTACAATAGACTTCAAACGGC
TAGGACTGTATATGAGGAAACAAATGTACCTTAGatggaCAGGAATTCAG
GATTAGACGATTTAGTAAATGTTTCAATTGATATGCTTTATTCAGAGCAA
GAGGCTCAAGTTGCTGCCCAAGCAATAGCACCAGAAAATGAAGCTAGTAA
TAAAACTAAATCTGGTAAAAAGATGATTGGATGTCCAATTTGTGGCATTG
AATATGCAACATTATATAATCTCAAAAGACATATGGCTACAAAACACAAG
GATGTACCAATACCAGACACTCTTAGTAGAGGAAACACTAAATGTTTGGA
ATGTAATGCtcgattttatcaaacaaaagaaTTGGTGAAACATTTAGAAT
CAGAGCATAAGATGGAATTTCAGATTGAAACGCTCACTTTTCGAGACCTA
GAAGAATTTGATGCATGGAAAGATAATTACGAGAAGACAAACCACTGTTA
TTATATTGCTTATGGGTCACGATGGGATGATGATCCTGGGAAGAATTTCA
AAGATTTCCGATGCAATCGAAGTGGTTGGTACAGAAGTAAAAAATCCAAT
GATGAACCAAgacaaaggaaaatgaaaagtgCAGGGTCAAACAAGATCGG
AAATAATTGTACATCAACAATAAAATTGAGAGACAAAGTAGATGGAACAC
TTCAAGCTACCATCAACATGACACATTACTCccatgaaattgaaataaaa
catGTGTCAAGAAAagTAAGAGATTACAATATTGAACAGGGGACTACAGA
TTATATTTATCCTGATACAAAGTCTGTTAAACGTGCATACAAACGCAGAG
tAACTCCAGCACAACGCGAAGAATTAAGTAATGTGAAATACCAAATTCAA
GCTGAACTTTTAAAGATACAAGAACTTGTAGAAGGAAGCTCAGTGAGCAA
TTTGCAGAATATACAAATGCTTTACAATAGACTTCAAACGGCTAGGACTG
TATATGAGGAAACAAATGTACCTTAGatggaCAGGAATTCAGGATTAGAC
GATTTAGTAAATGTTTCAATTGATATGCTTTATTCAGAGCAAGAGGCTCA
AGTTGCTGCCCAAGCAATAGCACCAGAAAATGAAGCTAGTAATAAAACTA
AATCTGGTAAAAAGATGATTGGATGTCCAATTTGTGGCATTGAATATGCA
ACATTATATAATCTCAAAAGACATATGGCTACAAAACACAAGGATGTACC
AATACCAGACACTCTTAGTAGAGGAAACACTAAATGTTTGGAATGTAATG
CtcgattttatcaaacaaaagaaTTGGTGAAACATTTAGAATCAGAGCAT
AAGATGGAATTTCAGATTGAAACGCTCACTTTTCGAGACCTAGAAGAATT
TGATGCATGGAAAGATAATTACGAGAAGACAAACCACTGTTATTATATTG
CTTATGGGTCACGATGGGATGATGATCCTGGGAAGAATTTCAAAGATTTC
CGATGCAATCGAAGTGGTTGGTACAGAAGTAAAAAATCCAATGATGAACC
AAgacaaaggaaaatgaaaagtgCAGGGTCAAACAAGATCGGAAATAATT
GTACATCAACAATAAAATTGAGAGACAAAGTAGATGGAACACTTCAAGCT
ACCATCAACATGACACATTACTCccatgaaattgaaataaaacatGTGTC
AAGAAAagTAAGAGATTACAATATTGAACAGGGGACTACAGATTATATTT
ATCCTGATACAAAGTCTGTTAAACGTGCATACAAACGCAGAGtAACTCCA
GCACAACGCGAAGAATTAAGTAATGTGAAATACCAAATTCAAGCTGAACT
TTTAAAGATACAAGAACTTGTAGAAGGAAGCTCAGTGAGCAATTTGCAGA
ATATACAAATGCTTTACAATAGACTTCAAACGGCTAGGACTGTATATGAG
GAAACAAATGTACCTTAGatggaCAGGAATTCAGGATTAGACGATTTAGT
AAATGTTTCAATTGATATGCTTTATTCAGAGCAAGAGGCTCAAGTTGCTG
CCCAAGCAATAGCACCAGAAAATGAAGCTAGTAATAAAACTAAATCTGGT
AAAAAGATGATTGGATGTCCAATTTGTGGCATTGAATATGCAACATTATA
TAATCTCAAAAGACATATGGCTACAAAACACAAGGATGTACCAATACCAG
ACACTCTTAGTAGAGGAAACACTAAATGTTTGGAATGTAATGCtcgattt
tatcaaacaaaagaaTTGGTGAAACATTTAGAATCAGAGCATAAGATGGA
ATTTCAGATTGAAACGCTCACTTTTCGAGACCTAGAAGAATTTGATGCAT
GGAAAGATAATTACGAGAAGACAAACCACTGTTATTATATTGCTTATGGG
TCACGATGGGATGATGATCCTGGGAAGAATTTCAAAGATTTCCGATGCAA
TCGAAGTGGTTGGTACAGAAGTAAAAAATCCAATGATGAACCAAgacaaa
ggaaaatgaaaagtgCAGGGTCAAACAAGATCGGAAATAATTGTACATCA
ACAATAAAATTGAGAGACAAAGTAGATGGAACACTTCAAGCTACCATCAA
CATGACACATTACTCccatgaaattgaaataaaacatGTGTCAAGAAAag
TAAGAGATTACAATATTGAACAGGGGACTACAGATTATATTTATCCTGAT
ACAAAGTCTGTTAAACGTGCATACAAACGCAGAGtAACTCCAGCACAACG
CGAAGAATTAAGTAATGTGAAATACCAAATTCAAGCTGAACTTTTAAAGA
TACAAGAACTTGTAGAAGGAAGCTCAGTGAGCAATTTGCAGAATATACAA
ATGCTTTACAATAGACTTCAAACGGCTAGGACTGTATATGAGGAAACAAA
TGTACCTTAG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_009886	XLOC_009886	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00017674-protein	TCONS_00017674-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000273	supercontig	sc0000273:215332..218356 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
35.5709	35.1114	20.2256	16.6215	10.1804	6.38941	10.3047	12.6385	9.26736	8.04187	9.82	9.14498	9.54549	8.58276	13.7243	13.0245	12.5935	15.7047	8.12395	7.18795	12.7956	11.3398	36.4749	29.8902	14.3758	13.3361	10.6921	10.0925	17.5509	16.9682

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR013087	Znf_C2H2_type

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00017674 vs. Swiss-Prot (Human)

BLAST of TCONS_00017674 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00017674 (transcript) - C. hemisphaerica