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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017593 ID=TCONS_00017593|Name=TCONS_00017593|organism=Clytia hemisphaerica|type=transcript|length=2334bp
CATCACTTAGTTATCTTATTTAATGTGAAAATTACTTATAATCAGTTTCA
AATGATCTCTTATTAATTAACAagagttgatatttttttttgcttgttgt
CATGTTATGGTTTGTTCAAGATGAAGTCTTATGTTGACCAGTTCGTAAAA
ATGAGGGCATGACTATGTATAATTTTTCAAACGGAATTCTTTAAAGATGA
CTAATTTGTTGTGATTTGATAATCAGCGTTTCGtatacacacccctgtct
cattagAGATTTAAAGATGCTGAGTTAAATCTCTGTGCTGGATATGGAAA
TTCTACTGCTGggatagactggagtcgtttataatgcgtgtaatacagta
gtataggcgttatatgataatacgattattgttactgGATTTAGTTTGAC
TAAAATTGTTCctctattactttttgctttatttctactatgtctgaatt
agtcgtctagctttcTAGACTACTGCTGGGATCGAGTAGGattcaaaaat
cttttgcaTGATTTTACGATCGATTACTTACCCGTTGACCGACCTGAACT
TGTCGGCCTCCAAATGCGATTTTCcacattatattatatttcaatatagt
tttgagcgaccgtagtgcagtggtagagcatccggctatgggtcatacca
aagattcccaaaatggtacttgatgcttctttgcttgatgcctctctgct
tgatgctcagcaattaggagaaggatcaagggtacgTGGAGATCCAGGGA
GAAatagtggcgccctcccctaccttcgggtagatagctatcaaaagagg
agccttcgggtcacctccgactgcggtcgcagacttccTTACTTCAATAt
agttttactttttcattGTTCATTTTCAGTGATGGAAAAAACAACAGGAC
ATATCATTTCAACGTTgctttgtatatttttttccttattgGATAATTAC
ACAGACATTGCACAGAGTGTGATCCACTTCTGCAACCACAAGAGATGGTA
TGGTCATCTCACCATGGCGCTTGTTGTGGCGCCCGCCCTCATCAATAGTG
TGTATACCGCCTGTATGTTTTACTGTAATAAAGGACGGATTGTACATAAC
GTTAAGTTCCCGTATCCAAAAGTTGTTTACGTGTTATGTTTTCTACTTCA
CGGTCATTACGCACGTCAAATCATTTGGATATACGCACTACGTACGAAAG
CGCTTAACGAAAGACTGGCCAAAGAGCTTGTTTCAACTGGACGAGATATG
AGTTTTTATTTGGAGATATTTCTTGAATCGATGCCTCAAATGATGCTACA
GTTATATATTATGACAGTCATTTACGGAGAGTTGCGTTTAATGGGATGCA
TTACGTTGTTTACGTCTTTCGTTGCGACGTCTTGGGGATTATTATTACTT
TATAACGACGGCAAAGAACgatttttcgcttttttgatCAACGGATTCTG
GCTTGCATCACGTGTTTTATCACTAGCCGTATTTTCGAGTATCCGACGAT
TTGCTATATTCGCTATTTTGTCTGTGCATTTCCTATTCGTCCTTCCGTTA
TGGTTTTACGAAAGCAAGAGACATCCGTTAGCGGAAGAACGGCTAACACG
ACGCGGGTTTTGTCATACGTTTGTTTCGGACTTCTTTTTCGCTATCTTGT
ACGCCGTATGTAACACCGTCACGCCGATGATCACACGTTATTACTTCCCG
TTGTCGTTCATGTTTATTATAGAGAACGTCGTATGTGCCGTAACCGTTTA
TTACTTCGGTGAAGTCAAACGTATCGTCAATGGTGAAAAGGCTTATATCA
AATTCAAGAACTGGCCCTACGCGTCAACTTTCATGGTAGGATTTTATACG
GTCACGATAATTGCGTTTTTATTAACACTTACAGTTCAATTAATAAAATG
TTCGAATCGAATTGATAAAACATTTATGCAATCGAACATTCGAAAGATCA
TCAGTAAAATACGACCGATTGAAGCGATTAAGAAATCAGTTTTCAGAAGA
CGTGGGACGAATAACGAAGCCGGTTTGAGAACAATCAGATCTGAAAGTTG
AAAATGGATTTTTCTGTATATATTACGAAAGTATACCTATTTTATGGTCT
GACTAGATtgtggtaaaataaaaattgtaaatatgatctttgtttataaa
taaataatgtattaaaaaataatgaattaattgTGATAAGCtaaattatt
ttagtttctttCTTCGGTTTTTCTTCGGGCTAAAGGTTTTTTACCaccta
ttttattttgaaaaaaacatagCTCGAAAACTGAAGAAATCGTAAGCCTG
GACCAAATGTCGTTATAAGGGTCCACCCAATTTA Run BLAST on NCBI transcript from alignment at sc0000271:120335..122668+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017593 ID=TCONS_00017593|Name=TCONS_00017593|organism=Clytia hemisphaerica|type=transcript|length=2334bp|location=Sequence derived from alignment at sc0000271:120335..122668+ (Clytia hemisphaerica)
CATCACTTAGTTATCTTATTTAATGTGAAAATTACTTATAATCAGTTTCA
AATGATCTCTTATTAATTAACAagagttgatatttttttttgcttgttgt
CATGTTATGGTTTGTTCAAGATGAAGTCTTATGTTGACCAGTTCGTAAAA
ATGAGGGCATGACTATGTATAATTTTTCAAACGGAATTCTTTAAAGATGA
CTAATTTGTTGTGATTTGATAATCAGCGTTTCGtatacacacccctgtct
cattagAGATTTAAAGATGCTGAGTTAAATCTCTGTGCTGGATATGGAAA
TTCTACTGCTGggatagactggagtcgtttataatgcgtgtaatacagta
gtataggcgttatatgataatacgattattgttactgGATTTAGTTTGAC
TAAAATTGTTCctctattactttttgctttatttctactatgtctgaatt
agtcgtctagctttcTAGACTACTGCTGGGATCGAGTAGGattcaaaaat
cttttgcaTGATTTTACGATCGATTACTTACCCGTTGACCGACCTGAACT
TGTCGGCCTCCAAATGCGATTTTCcacattatattatatttcaatatagt
tttgagcgaccgtagtgcagtggtagagcatccggctatgggtcatacca
aagattcccaaaatggtacttgatgcttctttgcttgatgcctctctgct
tgatgctcagcaattaggagaaggatcaagggtacgTGGAGATCCAGGGA
GAAatagtggcgccctcccctaccttcgggtagatagctatcaaaagagg
agccttcgggtcacctccgactgcggtcgcagacttccTTACTTCAATAt
agttttactttttcattGTTCATTTTCAGTGATGGAAAAAACAACAGGAC
ATATCATTTCAACGTTgctttgtatatttttttccttattgGATAATTAC
ACAGACATTGCACAGAGTGTGATCCACTTCTGCAACCACAAGAGATGGTA
TGGTCATCTCACCATGGCGCTTGTTGTGGCGCCCGCCCTCATCAATAGTG
TGTATACCGCCTGTATGTTTTACTGTAATAAAGGACGGATTGTACATAAC
GTTAAGTTCCCGTATCCAAAAGTTGTTTACGTGTTATGTTTTCTACTTCA
CGGTCATTACGCACGTCAAATCATTTGGATATACGCACTACGTACGAAAG
CGCTTAACGAAAGACTGGCCAAAGAGCTTGTTTCAACTGGACGAGATATG
AGTTTTTATTTGGAGATATTTCTTGAATCGATGCCTCAAATGATGCTACA
GTTATATATTATGACAGTCATTTACGGAGAGTTGCGTTTAATGGGATGCA
TTACGTTGTTTACGTCTTTCGTTGCGACGTCTTGGGGATTATTATTACTT
TATAACGACGGCAAAGAACgatttttcgcttttttgatCAACGGATTCTG
GCTTGCATCACGTGTTTTATCACTAGCCGTATTTTCGAGTATCCGACGAT
TTGCTATATTCGCTATTTTGTCTGTGCATTTCCTATTCGTCCTTCCGTTA
TGGTTTTACGAAAGCAAGAGACATCCGTTAGCGGAAGAACGGCTAACACG
ACGCGGGTTTTGTCATACGTTTGTTTCGGACTTCTTTTTCGCTATCTTGT
ACGCCGTATGTAACACCGTCACGCCGATGATCACACGTTATTACTTCCCG
TTGTCGTTCATGTTTATTATAGAGAACGTCGTATGTGCCGTAACCGTTTA
TTACTTCGGTGAAGTCAAACGTATCGTCAATGGTGAAAAGGCTTATATCA
AATTCAAGAACTGGCCCTACGCGTCAACTTTCATGGTAGGATTTTATACG
GTCACGATAATTGCGTTTTTATTAACACTTACAGTTCAATTAATAAAATG
TTCGAATCGAATTGATAAAACATTTATGCAATCGAACATTCGAAAGATCA
TCAGTAAAATACGACCGATTGAAGCGATTAAGAAATCAGTTTTCAGAAGA
CGTGGGACGAATAACGAAGCCGGTTTGAGAACAATCAGATCTGAAAGTTG
AAAATGGATTTTTCTGTATATATTACGAAAGTATACCTATTTTATGGTCT
GACTAGATtgtggtaaaataaaaattgtaaatatgatctttgtttataaa
taaataatgtattaaaaaataatgaattaattgTGATAAGCtaaattatt
ttagtttctttCTTCGGTTTTTCTTCGGGCTAAAGGTTTTTTACCaccta
ttttattttgaaaaaaacatagCTCGAAAACTGAAGAAATCGTAAGCCTG
GACCAAATGTCGTTATAAGGGTCCACCCAATTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017593-exon-sc0000271-1491911889:120335..122668 | TCONS_00017593-exon-sc0000271-1491911889:120335..122668 | Clytia hemisphaerica | exon |
| TCONS_00017593-exon-sc0000271-1510915933:120335..122668 | TCONS_00017593-exon-sc0000271-1510915933:120335..122668 | Clytia hemisphaerica | exon |
| TCONS_00017593-exon-sc0000271-1575043694:120335..122668 | TCONS_00017593-exon-sc0000271-1575043694:120335..122668 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000271 | supercontig | sc0000271:120335..122668 + |
Blast
The following BLAST results are available for this feature:
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