TCONS_00017589 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017589
Unique NameTCONS_00017589
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1337

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017589 ID=TCONS_00017589|Name=TCONS_00017589|organism=Clytia hemisphaerica|type=transcript|length=1337bp
ttttttacaagaataatACAAAATATATGAATACATTATGGTTTGCATTG
AAGGAAGAGTGGCCTCTGCATCATTTACAGTATTTGCAATTCTGGCATTG
TATCAAGTTCGCATAATCTATGGTGATTATTGGAGCTACATTTATTGCCT
TGCAACTTTTGGATCTGCTTTTGCTTGTGTTTTGGTGCTACCTTATAATG
ACATTGTAAAACGATCTGCCCTCTTGGGTACAGTATTTGGCGGCTCATTT
GTGTTAATGTTTATTGTCACGTCACCATGGAATGTATTCTTCATGTATTT
TGCAGCACTTtcgttttttcacttttcagaaTATTTCATGACAGCTTTAT
ATAATCCTCATCGTTTGAGCATCGACTCATTTTTACTAAATCATAGTTTC
GAATACAAGGCAGCAGCAGTAGCATCTTGGATTGAATTTATTATCGAAGC
ATATTTCTTCCCGTCTAGTAAGAGATTTGGAATGTTATCTTTCATTGGCT
TATCAATGATCATTTGTGGGGAAGTTTTCCGTAAATTGGCAATGATCACC
GCAAAATCCAATTTTTCTCACATTGTGCAATCACACAAGAATGATGGACA
TTTGTTAGTAACCAATGGTATTTATGCTATCTCTAGACATCCGGCATACG
TCGGTTGGTTCATTTGGAGTGTAGGtaagaagtttttatttaaatGTTGT
TGGCTACTCCTACTATTTTTACAGATTATCAGCTAACTGTCTTAAAATTC
AATCCACTTTTCTCAAAGGGAAGAATGATAGAAAATCACACTGTTGAGAA
AGAAGAGCTTGATTTGATCAGGAATTCTGCNAATCCACTTTTCTCAAAGG
GAAGAATGATAGAAAATCACACTGTTGAGAAAGAAGAGCTTGATTTGATC
AGGAATTCTGctttttgcggaacgaccgttttgagggcgcgaagcgcccg
aatagggagtgtagcatcctttggcaagatctgcgtacgcggggcGTAAA
TTTATATTATGTTCGAAAAAGTGTTTCCAAAACTGCTACCTCCGACGATA
AATGTCGACTTTGCTCTGTATTGAAGAATGGCACCATGTTTAGCCACcga
aaagaagcatttacctcgtaaattttattgaaaaataattttagtaaaac
tttggttctgtcattgtaatttttttcaaaaatcacacatatctttaaaa
aaagtaaaagtgtatctaaaattatatcgagtttgactatccaatcaagt
gcgagatgtttgtttttgtgtcgttgctgctactttcatttttgcacact
tgcgaaacataaacaaagatggcgatttttgtcaagg
Run BLAST on NCBI

transcript from alignment at sc0000271:106004..107340+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017589 ID=TCONS_00017589|Name=TCONS_00017589|organism=Clytia hemisphaerica|type=transcript|length=1337bp|location=Sequence derived from alignment at sc0000271:106004..107340+ (Clytia hemisphaerica)
ttttttacaagaataatACAAAATATATGAATACATTATGGTTTGCATTG
AAGGAAGAGTGGCCTCTGCATCATTTACAGTATTTGCAATTCTGGCATTG
TATCAAGTTCGCATAATCTATGGTGATTATTGGAGCTACATTTATTGCCT
TGCAACTTTTGGATCTGCTTTTGCTTGTGTTTTGGTGCTACCTTATAATG
ACATTGTAAAACGATCTGCCCTCTTGGGTACAGTATTTGGCGGCTCATTT
GTGTTAATGTTTATTGTCACGTCACCATGGAATGTATTCTTCATGTATTT
TGCAGCACTTtcgttttttcacttttcagaaTATTTCATGACAGCTTTAT
ATAATCCTCATCGTTTGAGCATCGACTCATTTTTACTAAATCATAGTTTC
GAATACAAGGCAGCAGCAGTAGCATCTTGGATTGAATTTATTATCGAAGC
ATATTTCTTCCCGTCTAGTAAGAGATTTGGAATGTTATCTTTCATTGGCT
TATCAATGATCATTTGTGGGGAAGTTTTCCGTAAATTGGCAATGATCACC
GCAAAATCCAATTTTTCTCACATTGTGCAATCACACAAGAATGATGGACA
TTTGTTAGTAACCAATGGTATTTATGCTATCTCTAGACATCCGGCATACG
TCGGTTGGTTCATTTGGAGTGTAGGtaagaagtttttatttaaatGTTGT
TGGCTACTCCTACTATTTTTACAGATTATCAGCTAACTGTCTTAAAATTC
AATCCACTTTTCTCAAAGGGAAGAATGATAGAAAATCACACTGTTGAGAA
AGAAGAGCTTGATTTGATCAGGAATTCTGCNAATCCACTTTTCTCAAAGG
GAAGAATGATAGAAAATCACACTGTTGAGAAAGAAGAGCTTGATTTGATC
AGGAATTCTGctttttgcggaacgaccgttttgagggcgcgaagcgcccg
aatagggagtgtagcatcctttggcaagatctgcgtacgcggggcGTAAA
TTTATATTATGTTCGAAAAAGTGTTTCCAAAACTGCTACCTCCGACGATA
AATGTCGACTTTGCTCTGTATTGAAGAATGGCACCATGTTTAGCCACcga
aaagaagcatttacctcgtaaattttattgaaaaataattttagtaaaac
tttggttctgtcattgtaatttttttcaaaaatcacacatatctttaaaa
aaagtaaaagtgtatctaaaattatatcgagtttgactatccaatcaagt
gcgagatgtttgtttttgtgtcgttgctgctactttcatttttgcacact
tgcgaaacataaacaaagatggcgatttttgtcaagg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009836XLOC_009836Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017589-exon-sc0000271-1491911889:106004..107340TCONS_00017589-exon-sc0000271-1491911889:106004..107340Clytia hemisphaericaexon
TCONS_00017589-exon-sc0000271-1510915933:106004..107340TCONS_00017589-exon-sc0000271-1510915933:106004..107340Clytia hemisphaericaexon
TCONS_00017589-exon-sc0000271-1575043694:106004..107340TCONS_00017589-exon-sc0000271-1575043694:106004..107340Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000271supercontigsc0000271:106004..107340 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.3873	1.69666	19.9192	15.7214	4.96914	2.61818	3.37345	3.20224	4.59856	3.05744	2.5174	3.92963	2.61896	2.07345	1.32128	1.93946	2.18023	2.53475	2.44533	2.00655	2.15775	2.42108	1.66015	1.84529	2.96147	3.61736	1.13602	1.52271	1.38284	1.5101
Blast
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BLAST of TCONS_00017589 vs. Swiss-Prot (Human)
Match: ICMT (Protein-S-isoprenylcysteine O-methyltransferase OS=Homo sapiens GN=ICMT PE=1 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 8.714e-49
Identity = 85/159 (53.46%), Postives = 110/159 (69.18%), Query Frame = 2 
Query:  200 DIVKRSALLGTVFGGSFVLMFIVTSPWNVFFMYFAALSFFHFSEYFMTALYNPHRLSIDSFLLNHSFEYKAAAVASWIEFIIEAYFFPSSKRFGMLSFIGLSMIICGEVFRKLAMITAKSNFSHIVQSHKNDGHLLVTNGIYAISRHPAYVGWFIWSVG 676
             I  R+  LG VFG   +L F  +S W+ F  Y  +LS FH+SEY +TA+ NP  LS+DSFLLNHS EY  AA++SW+EF +E  F+P  K+   LS  GL M++ GE  RK AM TA SNF+H+VQ+ K+D H LVT+G+YA  RHP+YVGWF WS+G
Sbjct:   65 QIAIRACFLGFVFGCGTLLSFSQSS-WSHFGWYMCSLSLFHYSEYLVTAVNNPKSLSLDSFLLNHSLEYTVAALSSWLEFTLENIFWPELKQITWLSVTGLLMVVFGECLRKAAMFTAGSNFNHVVQNEKSDTHTLVTSGVYAWFRHPSYVGWFYWSIG 222
The following BLAST results are available for this feature:
BLAST of TCONS_00017589 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ICMT8.714e-4953.46Protein-S-isoprenylcysteine O-methyltransferase OS... [more]
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