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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017567 ID=TCONS_00017567|Name=TCONS_00017567|organism=Clytia hemisphaerica|type=transcript|length=1481bp
TGAATTTTACGTTTTGTTAGAGGGAGAATGCTCGCTCGACAGTTCCATTG
ATAAGATTTGCAAAAATCTATAACAAATTAGCTATGAACATTTggattta
aaaattataaaactactttaggaaagaaagaaattacACCAACAAATACT
ATATTCAAACAGTAGAAATGAAAGAGAGCCTATTATCATCTCCACCTCTA
TTGAGACTAATCTGTGGCATTAAAAGTCTTCTCTGGAGGAGTTCCTCAGC
CTCTTGGCAATCCTGACATTCCTCCTCTTGATCAAAAGACATACAACGTA
CAGCACCATTTGGTGTAAACTCGGTAGTGATATCTCTTGGACTGGAAACa
tctttctttttatctttcCCTCGAGGTGTAACTGGACTTGCTCTACTAGA
AATCTGAGctagttttaattttaaattttgaaaacgtcTGGTGACTTGGC
CAGATCCTCCTTCAGCAATCCCGGCTGCTTCCTTTTCCTGTCGTTCTTGT
TCCTTTTTAGCATCTTCCGTTTTCCGACGGTTCCGCtctttattataaaa
atattcaaagtttgaaactACAACAGGGACTGGTAAAGCAATAGTTAACA
CACCACAAACCACAGCCATTGAACCTACTATCTGACCCCAAAACGTCTTT
GGGTACATATCGCCGTAACCTACTGTTGTCATAGTAACGATTGCCCACCA
AAAAGAGGCTGGTATCGATTTAAATTTTGTCCCCTCCTGTTGATACTCAG
CAAAATATGCACAACTACCAAATATAAGAATCATAACGAACAAGAAGAAC
GCTAACATCATTAGTTCGTTAAATGAAGCTTTTAAAGTATTTCCTAGAAT
TTGTAATCCTCGAGAGTGTCGTGCTAATTTGAAGACACGCAACACGCGAA
TGACACGTAGCATAGAAAGAGAGCCTCCTCCTCCTGATTGGGCGAGCGCT
ATCGCTAAGTAGTATGGTAGGATGGATAAAAAGTCGATAATGCTTCCAGT
ATCGATAAAAAACTTGAGTTTTGATGGGCAACACAAGAATCTGAGAAATA
ATTCTATAGTGAACCAAACAATAACTGCTGTATTAACGTAGAAAAGCCAT
GTATCATGTTCGTTTGGGATTTTAATTTCCTTGGTCACTCCATTGATCGT
TTGGTTCACGTAGCGAGGTGCAAATTCCGGTAACGTCTCAATAATGAACA
GAACTAAAGATATAACAATTATAAACACTGAAGCAAATGCAAAATATTTC
GCTGAACGACTTGATTGTGGATTCTCTAAAAATTGCCAGACAACTTTGAA
AAGCCAATTATCCGGTTCCTCTTCGATTTTTTCTGGTTCTTTTAATCCGT
TATCTAATTGCAGTTTtgatatgacgtcatcaccNCAAACAATAACTGCT
GTATTAACGTAGAAAAGCCATGTATCATGTTCGTTTGGGATTTTAATTTC
CTTGGTCACTCCATTGATCGTTTGGTTTACG Run BLAST on NCBI protein sequence of TCONS_00017567-protein >TCONS_00017567-protein ID=TCONS_00017567-protein|Name=TCONS_00017567-protein|organism=Clytia hemisphaerica|type=polypeptide|length=441bp
VNQTINGVTKEIKIPNEHDTWLFYVNTAVIVXGDDVISKLQLDNGLKEPE
KIEEEPDNWLFKVVWQFLENPQSSRSAKYFAFASVFIIVISLVLFIIETL
PEFAPRYVNQTINGVTKEIKIPNEHDTWLFYVNTAVIVWFTIELFLRFLC
CPSKLKFFIDTGSIIDFLSILPYYLAIALAQSGGGGSLSMLRVIRVLRVF
KLARHSRGLQILGNTLKASFNELMMLAFFLFVMILIFGSCAYFAEYQQEG
TKFKSIPASFWWAIVTMTTVGYGDMYPKTFWGQIVGSMAVVCGVLTIALP
VPVVVSNFEYFYNKERNRRKTEDAKKEQERQEKEAAGIAEGGSGQVTRRF
QNLKLKLAQISSRASPVTPRGKDKKKDVSSPRDITTEFTPNGAVRCMSFD
QEEECQDCQEAEELLQRRLLMPQISLNRGGDDNRLSFISTV Run BLAST on NCBI transcript from alignment at sc0000269:150461..151941 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017567 ID=TCONS_00017567|Name=TCONS_00017567|organism=Clytia hemisphaerica|type=transcript|length=1481bp|location=Sequence derived from alignment at sc0000269:150461..151941 (Clytia hemisphaerica)
CGTAAACCAAACGATCAATGGAGTGACCAAGGAAATTAAAATCCCAAACG
AACATGATACATGGCTTTTCTACGTTAATACAGCAGTTATTGTTTGNggt
gatgacgtcatatcaAAACTGCAATTAGATAACGGATTAAAAGAACCAGA
AAAAATCGAAGAGGAACCGGATAATTGGCTTTTCAAAGTTGTCTGGCAAT
TTTTAGAGAATCCACAATCAAGTCGTTCAGCGAAATATTTTGCATTTGCT
TCAGTGTTTATAATTGTTATATCTTTAGTTCTGTTCATTATTGAGACGTT
ACCGGAATTTGCACCTCGCTACGTGAACCAAACGATCAATGGAGTGACCA
AGGAAATTAAAATCCCAAACGAACATGATACATGGCTTTTCTACGTTAAT
ACAGCAGTTATTGTTTGGTTCACTATAGAATTATTTCTCAGATTCTTGTG
TTGCCCATCAAAACTCAAGTTTTTTATCGATACTGGAAGCATTATCGACT
TTTTATCCATCCTACCATACTACTTAGCGATAGCGCTCGCCCAATCAGGA
GGAGGAGGCTCTCTTTCTATGCTACGTGTCATTCGCGTGTTGCGTGTCTT
CAAATTAGCACGACACTCTCGAGGATTACAAATTCTAGGAAATACTTTAA
AAGCTTCATTTAACGAACTAATGATGTTAGCGTTCTTCTTGTTCGTTATG
ATTCTTATATTTGGTAGTTGTGCATATTTTGCTGAGTATCAACAGGAGGG
GACAAAATTTAAATCGATACCAGCCTCTTTTTGGTGGGCAATCGTTACTA
TGACAACAGTAGGTTACGGCGATATGTACCCAAAGACGTTTTGGGGTCAG
ATAGTAGGTTCAATGGCTGTGGTTTGTGGTGTGTTAACTATTGCTTTACC
AGTCCCTGTTGTagtttcaaactttgaatatttttataataaagaGCGGA
ACCGTCGGAAAACGGAAGATGCTAAAAAGGAACAAGAACGACAGGAAAAG
GAAGCAGCCGGGATTGCTGAAGGAGGATCTGGCCAAGTCACCAgacgttt
tcaaaatttaaaattaaaactagCTCAGATTTCTAGTAGAGCAAGTCCAG
TTACACCTCGAGGgaaagataaaaagaaagatGTTTCCAGTCCAAGAGAT
ATCACTACCGAGTTTACACCAAATGGTGCTGTACGTTGTATGTCTTTTGA
TCAAGAGGAGGAATGTCAGGATTGCCAAGAGGCTGAGGAACTCCTCCAGA
GAAGACTTTTAATGCCACAGATTAGTCTCAATAGAGGTGGAGATGATAAT
AGGCTCTCTTTCATTTCTACTGTTTGAATATAGTATTTGTTGGTgtaatt
tctttctttcctaaagtagttttataatttttaaatccAAATGTTCATAG
CTAATTTGTTATAGATTTTTGCAAATCTTATCAATGGAACTGTCGAGCGA
GCATTCTCCCTCTAACAAAACGTAAAATTCA Coding sequence (CDS) from alignment at sc0000269:150461..151941 >TCONS_00017567 ID=TCONS_00017567|Name=TCONS_00017567|organism=Clytia hemisphaerica|type=CDS|length=1326bp|location=Sequence derived from alignment at sc0000269:150461..151941 (Clytia hemisphaerica)
GTAAACCAAACGATCAATGGAGTGACCAAGGAAATTAAAATCCCAAACGA
ACATGATACATGGCTTTTCTACGTTAATACAGCAGTTATTGTTTGNggtg
atgacgtcatatcaAAACTGCAATTAGATAACGGATTAAAAGAACCAGAA
AAAATCGAAGAGGAACCGGATAATTGGCTTTTCAAAGTTGTCTGGCAATT
TTTAGAGAATCCACAATCAAGTCGTTCAGCGAAATATTTTGCATTTGCTT
CAGTGTTTATAATTGTTATATCTTTAGTTCTGTTCATTATTGAGACGTTA
CCGGAATTTGCACCTCGCTACGTGAACCAAACGATCAATGGAGTGACCAA
GGAAATTAAAATCCCAAACGAACATGATACATGGCTTTTCTACGTTAATA
CAGCAGTTATTGTTTGGTTCACTATAGAATTATTTCTCAGATTCTTGTGT
TGCCCATCAAAACTCAAGTTTTTTATCGATACTGGAAGCATTATCGACTT
TTTATCCATCCTACCATACTACTTAGCGATAGCGCTCGCCCAATCAGGAG
GAGGAGGCTCTCTTTCTATGCTACGTGTCATTCGCGTGTTGCGTGTCTTC
AAATTAGCACGACACTCTCGAGGATTACAAATTCTAGGAAATACTTTAAA
AGCTTCATTTAACGAACTAATGATGTTAGCGTTCTTCTTGTTCGTTATGA
TTCTTATATTTGGTAGTTGTGCATATTTTGCTGAGTATCAACAGGAGGGG
ACAAAATTTAAATCGATACCAGCCTCTTTTTGGTGGGCAATCGTTACTAT
GACAACAGTAGGTTACGGCGATATGTACCCAAAGACGTTTTGGGGTCAGA
TAGTAGGTTCAATGGCTGTGGTTTGTGGTGTGTTAACTATTGCTTTACCA
GTCCCTGTTGTagtttcaaactttgaatatttttataataaagaGCGGAA
CCGTCGGAAAACGGAAGATGCTAAAAAGGAACAAGAACGACAGGAAAAGG
AAGCAGCCGGGATTGCTGAAGGAGGATCTGGCCAAGTCACCAgacgtttt
caaaatttaaaattaaaactagCTCAGATTTCTAGTAGAGCAAGTCCAGT
TACACCTCGAGGgaaagataaaaagaaagatGTTTCCAGTCCAAGAGATA
TCACTACCGAGTTTACACCAAATGGTGCTGTACGTTGTATGTCTTTTGAT
CAAGAGGAGGAATGTCAGGATTGCCAAGAGGCTGAGGAACTCCTCCAGAG
AAGACTTTTAATGCCACAGATTAGTCTCAATAGAGGTGGAGATGATAATA
GGCTCTCTTTCATTTCTACTGTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017567-exon-sc0000269-1491911889:150461..151941 | TCONS_00017567-exon-sc0000269-1491911889:150461..151941 | Clytia hemisphaerica | exon |
| TCONS_00017567-exon-sc0000269-1510915933:150461..151941 | TCONS_00017567-exon-sc0000269-1510915933:150461..151941 | Clytia hemisphaerica | exon |
| TCONS_00017567-exon-sc0000269-1575043694:150461..151941 | TCONS_00017567-exon-sc0000269-1575043694:150461..151941 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000269 | supercontig | sc0000269:150461..151941 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0008076 | voltage-gated potassium channel complex |
| GO:0016020 | membrane |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005249 | voltage-gated potassium channel activity |
| GO:0005216 | ion channel activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006813 | potassium ion transport |
| GO:0055085 | transmembrane transport |
| GO:0006811 | ion transport |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006811 |
ion transport |
| biological_process |
GO:0006813 |
potassium ion transport |
| biological_process |
GO:0055085 |
transmembrane transport |
| cellular_component |
GO:0016020 |
membrane |
| cellular_component |
GO:0008076 |
voltage-gated potassium channel complex |
| molecular_function |
GO:0005216 |
ion channel activity |
| molecular_function |
GO:0005249 |
voltage-gated potassium channel activity |
Blast
BLAST of TCONS_00017567 vs. Swiss-Prot (Human)
Match: KCNA1 (Potassium voltage-gated channel subfamily A member 1 OS=Homo sapiens GN=KCNA1 PE=1 SV=2) HSP 1 Score: 229.565 bits (584), Expect = 4.122e-68 Identity = 133/298 (44.63%), Postives = 189/298 (63.42%), Query Frame = -2
Query: 536 GDDVISKLQLDNG-LKEPEKIEEEPDNWLFKVVWQFLENPQSSRSAKYFAFAXXXXXXXXXXXXXIETLPEFAP-RYVNQTINGVTKEIKIPNEH--DTWLFYVNTAVIVWFTIELFLRFLCCPSKLKFFIDTGSIIDFLSILPYYXXXXXX-----------XXXXXXXXSMLRVIRVLRVFKLARHSRGLQILGNTLKASFNELMMLAFFLFVMILIFGSCAYFAEYQQEGTKFKSIPASFWWAIVTMTTVGYGDMYPKTFWGQIVGSMAVVCGVLTIALPVPVVVSNFEYFYNKE 1384
G++ + K + D G +KE E+ P+ + VW E P+SS A+ A SV +I+IS+V+F +ETLPE + T++ + I N + F V T I+WF+ EL +RF CPSK FF + + ID ++I+PY++ + Q+ L ++R++RV R+FKL+RHS+GLQILG TLKAS EL +L FFLF+ +++F S YFAE ++ + F SIP +FWWA+V+MTTVGYGDMYP T G+IVGS+ + GVLTIALPVPV+VSNF YFY++E
Sbjct: 123 GEEAMEKFREDEGFIKEEER--PLPEKEYQRQVWLLFEYPESSGPARVIAIVSVMVILISIVIFCLETLPELKDDKDFTGTVHRIDNTTVIYNSNIFTDPFFIVETLCIIWFSFELVVRFFACPSKTDFFKNIMNFIDIVAIIPYFITLGTEIAEQEGNQKGEQATSLAILRVIRLVRVFRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEAEEAESHFSSIPDAFWWAVVSMTTVGYGDMYPVTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRE 418
The following BLAST results are available for this feature:
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