TCONS_00017567-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00017567-protein
Unique NameTCONS_00017567-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length441

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00017567-protein ID=TCONS_00017567-protein|Name=TCONS_00017567-protein|organism=Clytia hemisphaerica|type=polypeptide|length=441bp
VNQTINGVTKEIKIPNEHDTWLFYVNTAVIVXGDDVISKLQLDNGLKEPE
KIEEEPDNWLFKVVWQFLENPQSSRSAKYFAFASVFIIVISLVLFIIETL
PEFAPRYVNQTINGVTKEIKIPNEHDTWLFYVNTAVIVWFTIELFLRFLC
CPSKLKFFIDTGSIIDFLSILPYYLAIALAQSGGGGSLSMLRVIRVLRVF
KLARHSRGLQILGNTLKASFNELMMLAFFLFVMILIFGSCAYFAEYQQEG
TKFKSIPASFWWAIVTMTTVGYGDMYPKTFWGQIVGSMAVVCGVLTIALP
VPVVVSNFEYFYNKERNRRKTEDAKKEQERQEKEAAGIAEGGSGQVTRRF
QNLKLKLAQISSRASPVTPRGKDKKKDVSSPRDITTEFTPNGAVRCMSFD
QEEECQDCQEAEELLQRRLLMPQISLNRGGDDNRLSFISTV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_009824XLOC_009824Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00017567TCONS_00017567Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003968K_chnl_volt-dep_Kv
IPR028325VG_K_chnl
IPR005821Ion_trans_dom
Vocabulary: Cellular Component
TermDefinition
GO:0008076voltage-gated potassium channel complex
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0005249voltage-gated potassium channel activity
GO:0005216ion channel activity
Vocabulary: Biological Process
TermDefinition
GO:0006813potassium ion transport
GO:0055085transmembrane transport
GO:0006811ion transport
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006811 ion transport
biological_process GO:0006813 potassium ion transport
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016020 membrane
cellular_component GO:0008076 voltage-gated potassium channel complex
molecular_function GO:0005216 ion channel activity
molecular_function GO:0005249 voltage-gated potassium channel activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 312..334
NoneNo IPR availableGENE3D1.20.120.350coord: 75..221
e-value: 2.8E-35
score: 120.5
NoneNo IPR availableGENE3D1.20.5.110coord: 274..308
e-value: 6.5E-12
score: 44.4
NoneNo IPR availableGENE3D1.10.287.70coord: 222..272
e-value: 7.6E-19
score: 67.1
NoneNo IPR availableSUPERFAMILY81324Voltage-gated potassium channelscoord: 73..309
IPR003968Potassium channel, voltage dependent, KvPRINTSPR01491KVCHANNELcoord: 198..206
score: 73.8
coord: 293..304
score: 78.06
coord: 222..236
score: 45.28
IPR028325Voltage-gated potassium channelPRINTSPR00169KCHANNELcoord: 131..154
score: 45.79
coord: 282..308
score: 61.24
coord: 253..275
score: 78.8
coord: 157..177
score: 40.99
coord: 222..245
score: 48.07
coord: 71..99
score: 41.09
coord: 193..219
score: 64.83
IPR005821Ion transport domainPFAMPF00520Ion_transcoord: 78..315
e-value: 4.2E-47
score: 160.3

Blast
[Close]
BLAST of TCONS_00017567-protein vs. Swiss-Prot (Human)
Match: KCNA1 (Potassium voltage-gated channel subfamily A member 1 OS=Homo sapiens GN=KCNA1 PE=1 SV=2)

HSP 1 Score: 258.84 bits (660), Expect = 2.966e-81
Identity = 138/298 (46.31%), Postives = 193/298 (64.77%), Query Frame = 0 
Query:   33 GDDVISKLQLDNG-LKEPEKIEEEPDNWLFKVVWQFLENPQSSRSAKYFAFASVFIIVISLVLFIIETLPEFAP-RYVNQTINGVTKEIKIPNEH--DTWLFYVNTAVIVWFTIELFLRFLCCPSKLKFFIDTGSIIDFLSILPYYLAIA--LAQSGG------GGSLSMLRVIR---VLRVFKLARHSRGLQILGNTLKASFNELMMLAFFLFVMILIFGSCAYFAEYQQEGTKFKSIPASFWWAIVTMTTVGYGDMYPKTFWGQIVGSMAVVCGVLTIALPVPVVVSNFEYFYNKE 315
            G++ + K + D G +KE E+    P+    + VW   E P+SS  A+  A  SV +I+IS+V+F +ETLPE    +    T++ +     I N +      F V T  I+WF+ EL +RF  CPSK  FF +  + ID ++I+PY++ +   +A+  G        SL++LRVIR   V R+FKL+RHS+GLQILG TLKAS  EL +L FFLF+ +++F S  YFAE ++  + F SIP +FWWA+V+MTTVGYGDMYP T  G+IVGS+  + GVLTIALPVPV+VSNF YFY++E
Sbjct:  123 GEEAMEKFREDEGFIKEEER--PLPEKEYQRQVWLLFEYPESSGPARVIAIVSVMVILISIVIFCLETLPELKDDKDFTGTVHRIDNTTVIYNSNIFTDPFFIVETLCIIWFSFELVVRFFACPSKTDFFKNIMNFIDIVAIIPYFITLGTEIAEQEGNQKGEQATSLAILRVIRLVRVFRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEAEEAESHFSSIPDAFWWAVVSMTTVGYGDMYPVTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRE 418
The following BLAST results are available for this feature:
BLAST of TCONS_00017567-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KCNA12.966e-8146.31Potassium voltage-gated channel subfamily A member... [more]
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