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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017525 ID=TCONS_00017525|Name=TCONS_00017525|organism=Clytia hemisphaerica|type=transcript|length=1132bp
ATATAAACCACAAGAAGCAGACAACAAAGTTAACTCTTGGTATCATGATG
AAaatcgtttttctttttctggtTTGTTTTGTTCTTCAACAAACAAGTTC
AAATGAGTTGAAGGAAGGAGaatctcACAGCCGTGAACGCAGAGCAGTGT
GTGGTTTTCAAAGATATAACCCGACATTTAGAATGTGCTGCGGTGGCAGA
TTGGTTTTCAAAGGATCTAACAATGCGTGCTGTGGACAGGCAGGTTATAA
CATTCGATTCAGGATGTGCTGCGGTGGCAGATTGGTTTTCAAAGGATCTA
ACAATGCGTGCTGTGGACAGGCAGGTTATAACATTCGATTCAGGATGTGC
TGCGGTGGCAGATTGGTTTTCAAAGGATCTAACAATGCGTGCTGTGGACA
GGCAGGTTATAACATTCGATTCAGGATGTGCTGCGGTGGCAGATTGGTTT
TCAAAGGATCTAACAATGCGTGCTGTGGACAGGCAGGTTATAACATTCGA
TTCAGGATGTGCTGCGGTGGCAGATTGGTTTTCAAAGGATCTAACAATGC
GTGCTGCGGGCAGACAGGTTATAACATTCGATTCAGAAGTTGCTGCAATG
GTCGACTATGTTAAAAGGATAACTTTATAGCTACCGTTTTGAAGTTGTCA
AAGGCGATTCTCCTTCCTCAGCTCGATCGCATTAACCATCGAGTTTAAAG
TCCGAAGGGCTGGAGAGGAATTTTTTACCTCTATCATGTAGAAATAAGTA
AAGCCTTAAGCTTTGATTCGCTTTTAGAATGAGAGATTACATCGAACATT
GTTTACCTTCCTTCGGCATATTTTTCTAAATCCTTTCAATCTGGTGTTTG
TGTGAAAAGCACGCTGGTCACGCGTTTCAGATGGGAAATAACTGGATTCT
TTTCTTATCCAAGAGTCTCAACTCTAGCCCCTCGGGGCCTTAAACTCAAT
GGTAATAGCCCTTATCAAGAATTCGTAGAAACAAAAGGAGCAAAATgata
tcaaaaatataattttttattttgtatttttgtagagcaatcttttgatg
ttttttcatatatttttcatatatataaataaaattCTCAATATTAGTTC
CTTAAAATACGGATTCCAATTGAGTTATAACc Run BLAST on NCBI transcript from alignment at sc0000269:349048..357828+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017525 ID=TCONS_00017525|Name=TCONS_00017525|organism=Clytia hemisphaerica|type=transcript|length=8781bp|location=Sequence derived from alignment at sc0000269:349048..357828+ (Clytia hemisphaerica)
ATATAAACCACAAGAAGCAGACAACAAAGTTAACTCTTGGTATCATGATG
AAaatcgtttttctttttctggtTTGTTTTGTTCTTCAACAAACAAGTTC
AAATGAGTTGAAGGAAGGAGGTAAATATGTAACATGTTCGAACCCAGTAA
CTCTAATGAAACATAAGGTTTCCTGTTTGAAAACTAGATTTTGCCTTTTT
AACAACCAGGTTACAAACAACAAATCCATCTTCCCTTGTTCTTATATCAT
CTCATCCTTTCTATCTATGAGAAGGAATAGTAAAATTAAAACAGGAAACC
TGACATTTAAAGATCCACATTCAAACATTCAACAACATGCTCTGTTTCCC
TTTCAGAATCTCACAGCCGTGAACGCAGAGCAGTGTGTGGTTATCAAAGA
TATAACACTCGATTTAGGATGTGCTGCAGTGGCAAATTGGGCCTAAAAGG
ATCTAACAATGCCTGCTGCGGTCAAACAGGTTATAACACTCGATTCAGGA
TGTGCTGCGGTGGCAAATTGGGCCTAAAAGGATCTAGCAATACCTGTTGC
GGACAAACAGGTTATAACACTCGATTCAGGATATGCTGCGGTGGTAGATT
GGGCTTAAAAGGATCTAACAATGCCTGCTGCGGTCAAACAGGCTATAACA
CTCGATTCAGGATATGCTGCGGTGGCAAATTGGGCTTAAAAGGATCTAAC
AATGCCTGCTGCGGTCAAACAGGTTATAACACTCGATTCAGGATATGCTG
CGGTGGCAAATTGGGCTTAAAAGGATCTAACAATGCCTGCTGCGGTCAAA
CAGGTTATAACACTCGATTCAGGATATGCTGCGGTGGCAAATTGGGCTTA
AAAGGATCTAACAATGCCTGTTGCGGTCAAACAGGTTATAACACTCGATT
CAGGATATGCTGCGGTGGTAGATTGGGCTTAAAAGGATCTAACAATGCCT
GCTGCGGACAAACAGGTTATAACACTCGATTTAGGATGTGCTGCAATGGT
CGACTATGTTAAAAGAATATCTGTATAACTACAGCACCGAGTTTTAGTTT
AAACATATGGGGATAGAGAAGGTATCTCCAGCAacctcaagcaagaaaaa
gtgctTCCGGAACGACTGATTTAATTTATcgctttctttattttcacgcg
gcatatttttcaaaatctggcgattaattttactttcaatctgccGTTTG
TGCGAAAATCACGCTTTAATTCCATCAAAGAGTTTCAATAATAGCCCCTT
CAggactttaaactcaatggtattAACTCTTATCAAGgatttgtagaaat
aaaaggagcgaaatgatattgaaaatgttatttcttACTTTGTATTTCTA
TAGAGCNCAAGgatttgtagaaataaaaggagcgaaatgatattgaaaat
gttatttcttATTTTGTATTTCTATAGAGCAATCTTTTTATGTATTGTTA
TAGTATTGTATTGTGTATGTATTGTTatattcatgtaaaaataaaatttt
cattcttgATCCCTTAAAATATGGAATGTTTATGTTTCACTCTTGATAag
gaacacccctgtctcagtgccccagTAGAACtgtttccctcagtggggat
gaaaatttctatcaaaatgccaatgcggatggttttggagtgcaattttt
tacattcagttttcaatggggataaaatcatagagcaatttcctagtggg
gttgaaattgtaggatattttttccaccgggtacgattttttggcctatt
ttccaccggggtggggggtccaccgggtctgtgacacaggggtgttaagg
AATAACGATATTGCATAAAAGTACTGTCGCTCGACGTTTGTATGTATAGG
GTACTCTGTAAGAATCGACCAAAGAGAAGTACACtgtaaaagaaaattga
ttgcTTTTCAGCTATCTGTTACTACTTCAAAATAGTAGGGCTTGGTACAG
ACTATGGTTCTAGGAAGAAGAAACACATGAAAAACAAAGTACTTGAAAAA
TAACTAATAGAAAGCAAAACGCTGAATAAACGAAATTTAAAAGTGTTTAT
CCTTCGTCAAGTAGCTACCTCTCTTTCTTGGATCATAGAAAACATAAAGG
AAACAAAACTTTATATTCTCTAGACTCTCTTATATTCTTTAGACACTTTG
TAGTCTGATTTGCGCTcctgctgtttttttttttgaatacgtTTTTGAAG
TCAGCTGCGAAAGGTTTTATGAATTTAGATATTCATTTTTTGGGATCTTC
AGAAATCttagatgaaaattgaaaagatcTCCTTCGCCTAGGACAAAGTT
GGTCACGTTTTATAAATTGTAACAATGGGTTTCTGGAGGAGTATAAATAG
GGCAGGCTGGCAGTTCGGAGCCTGGAAGAAATCACAACAGTTATAACAAG
GGAAAACTATAACAATAAACCTATTGAAAaggtaaaactttttttttcaa
aatcgNAAACTATAACAATAAACCTATTGAAAAGgtaaaacttttatttt
caaaatcacaCTCTAGCACCGAAAATTTTCGGTGATTACATGAAGTTTGG
GGCCATTACATGAAGTTTGTTTCATAGTTATTTATGCTATCTTTACTGTA
AATGTCCAAAACTTTAGCACTTCTATAAACTTAACTATAGTTACAAATTC
CACATtagtaaaaatagtaaaaacctCAATCATCTTCAAGTAAAGCAAAG
TTTCGGATACGTGTAAACTATAAAGGTCCCTTTtttacaccctcgaaagt
ctctcaaaggggtacaaaaaccatttgGCTCCAACATAACCGCCCCCACA
CAAACCTAGTAATCTTGCCCACACAACCGTGAATAAACAGTTTGGTTAGT
TTTCATGGAAATTTGTAGCACTTTTTGCACAGAACATCTGCAGAAATTAT
AGTAAGTGAAACCAATGTTTTATGTAACTCATTATTTTCATAGATGGCGT
TAACATCGTAGAGTTTTGTCCTTTTGGTTTGTTTAATTGCTATCCAGGCT
ACCTTCTGTCCTACAAATCTCATTTATAATCGATCCAATCCAAGTCTTTT
CCAAAAGTTTGGCAATTGCACATTTACACGAAATGCTTCTGAAGGGTAAA
ACGATAAGATTCNGGCAATTGCACATTTACACAAAATGCTTTTGAAGGGT
AAAACGATAAGATTCAAGTTATACCTTATTGGAAAGACAATTCTGAGTGg
ctgaatttgattttttttattggaaatttttatcCAATGGAAGAAAATCT
TCAATCTGTGTTTTGTTGAAACTTTGAACGTTAAAATGTATTTAGATTTT
GCATATCCTTCTTGGATTAAAAGTTAGAGCCCTAATAGAGCCGTAATATG
AGTCCATTTAGCCCCTTTTAATCGATTGTAACTTTAGGTAAAAAAAATAC
AGCTTCAGAAAAGAgtaatttaaataattttggGCCCGTCCGAAAAATCT
TCCTTAtttatcttcattttcgaaaCTGTCAATTATATTTTTAGAGACTT
TAATACAATAATATAACCTgttgacaaaagaaaaaaatcaaaaatcatga
TGACCAAAAAAAATACAAGAGTACAAGATATATTAAATTGTAGTACAATC
CGTGCATCGAAAGtataattcaattttctttttgaaattgaatagaaaat
tgaaattttttctaatttcttttttttaatatgtgaaacaaaattgaaga
ataagtcaaatttgtattttctatttgaaataggaaattgaactaaaatg
atatattttgggaaaaatacgaccaaaaaaaaaatttcccgcttaAATTC
TTGCATCAACCGTTTTATATCTCCCTAATACTAAGCCACGCAATTTAATC
AGACAGCATTTACTTTATGTACACTCTTATTAGCTCCGTAGTAATTGGCG
CACTTGCTTTATGACATTTCTAAATAACGGAGATAATTGGAACCTTTGAA
AGTTACTGACAGTGCAAGCAGCAGTATTGTTAAGCTTCAATGGTCGAAAC
GAAAATTTATATTTCGAGTTGTtggtctttttcaaaaattttctcattaa
TGCATTAAGGTATCATATGAGAACTTCCCATTTTCACGGTCCTATAGAAG
TAAAGCTTGAGCTATGTCGACCTGCTTTTTCGGCCCACGCGAAAAAAGTC
ACTATATATTCTTATTTGCGGTGGCACACATTGGAAATAAAAATGTCGGC
ATATGTCCCATTTCCATTTATTTGCCGGAATTCTTTTTGCAGCATAAAAA
ctcgagttttttttttaaacgaaGCTTAAAAGTGTACTGGTAGTTAACAT
TTCGAACATCTTTGTATTTTAGGGAGATGGGGAGCATCTGAGAGGAGGAg
tcgagcccccccccccccNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNtcagaaaagagacgcaacttcaccccttcgat
tctttttatttggagcttgattttttgtatatgggtctgttttcaacgac
tagtttactagtctagtttTTGCCTCTTCTTCTGTCTTTAAAACGTCAAA
CTGTATCAAAGTCCTGCTTTAACTTTAtcctgctttgtttacaaattcgG
TTTTCACTAATTTTCAAGCTGATACAAAATCGGGTGATTCGCCccttttt
tgtaaacaaaaatccgattaaaacagattaaaaatggtagacaatTTGCG
AAATATATTTCAGGTGGAACAGCCTGCTTGCGAGCTTGTATaaccttttt
atcaaaatggtttgttttaaaCCAGCTTTTACTTAATATATACTTAATAG
AACATATGTTTTACTACCTGTCAATAGAAATATTTCTCACAGAATTCTAT
ACATCCTATTTATCTATTCTTTCTATGTACTATTGTGcaaacacacacac
acatttTTTTACTGCTCCtctttcacttttttcactTAAGTTTGAAAGCA
GTTGAAAACGGTATTATGAGCATGAATCTGGTAATGTCACCCAAATAGGt
caaagtttttggaaaaaataaagttttgaatttcacttttattcctggat
aatctttttattaatgacttcaattttcagaaaacataaatATCAGGGCT
TAATCAAACTGGCTTGGTCCAGAANNNCCTAGAGTAGTTATAATcagaca
aatttggcaaaaaactctttttagTTTACACTTCATTTGAGATAAAATAT
GCATAATCTAATACTTGTCTTAGATTTCAGTCCAAGCCTAATATAATAAG
CTGcattgaaaagcaatttttaccgTCCAGTatgacatatttttcaaatt
ctgacactttttccagaagaaaatctaaaatactaaaaaatattcctata
aagtttgacttcatgaaaagaaaactggctATGATCAGGTAACTTCATTC
TAGATTTAAAGGACCCATTAAAACCAAAAGTTTGTTATATTTCAGTTGat
caataaaaaattagaaaatgaaaccttgttggttgcggacgacataactt
tttgtcaaatttactttaaaatcAGCAATAAACATTAAACTGAGTAATTA
TTTGGCTTTTAATACTTTGCTGTACTTGAACCAAAATTTAATCANNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNtcccccccccccctggcccCCTTAAATTT
CCAagattgaaaagtttgaaaaagtgatCTGGAAAGTAAATATGAggtaa
atatgaaaattttagtTCGGCCAGTATTCTGCTTAGTAATTCAAGTTTAT
ATTTGGTGCTTACTTGCAAAGTTTCATGTCAAAGATTTTCACTCTAAGAA
ACACAGAAGCTTTAAGAGTTGTTGagtaatattatttttttcaccaTCTA
ATAACAGTTCTTAATGTTTTGATATCAACTGTCatttacgtcatcaaaac
atatcacagaaaaaatgctGAAACGCTGACActcctgaaaaaaaaacgcT
GAAATTCCAAGAAATCTAAATTTGACTAGCTTATACGTTTTTAGAAGACC
AAATATGACGATGAATTCATTTCCATTGTTCATTGTCACAGTATAAATAG
AAACGCAAGAAGTGAACAGTATTAAGAAGCTCACCATCAGACAGAGAAGA
TATACCACAAAAAACAGACAACAAAGTTAACTCTTGGTATCATGATGAAa
atcgtttttctttttctggtTTGTTTTGTTCTTCAACAAACAAGTTCAAA
TGAGTTGAAGGAAGGAGGTAAATATGTAACATGTTCGAACCCAGTAACTC
TAATGAAACATAAGGTTTCCTTTTCGAAAACTAGATTTTGCCTTTTTAGC
AACCAGTGGAAAACTGGTTACAAAAAACAACTTCTTCTTCCCTTGTTCTT
TTATCTTATCCTTTCGATCTATGAAAAGGGATGGTAAAATTGGAACAGGA
AACCTGACATTAAAAGATTCGCATTCAACGTATCAAAAACTTCAACAACA
TTCTCcgtttacctttcagaatctcACAGCCGTGAACGCAGAGCAGTGTG
TGGTTTTCAAAGATATAACCCGACATTTAGAATGTGCTGCGGTGGCAGAT
TGGTTTTCAAAGGATCTAACAATGCGTGCTGTGGACAGGCAGGTTATAAC
ATTCGATTCAGGATGTGCTGCGGTGGCAGATTGGTTTTCAAAGGATCTAA
CAATGCGTGCTGTGGACAGGCAGGTTATAACATTCGATTCAGGATGTGCT
GCGGTGGCAGATTGGTTTTCAAAGGATCTAACAATGCGTGCTGTGGACAG
GCAGGTTATAACATTCGATTCAGGATGTGCTGCGGTGGCAGATTGGTTTT
CAAAGGATCTAACAATGCGTGCTGTGGACAGGCAGGTTATAACATTCGAT
TCAGGATGTGCTGCGGTGGCAGATTGGTTTTCAAAGGATCTAACAATGCG
TGCTGCGGGCAGACAGGTTATAACATTCGATTCAGAAGTTGCTGCAATGG
TCGACTATGTTAAAAGGATAACTTTATAGCTACCGTTTTGAAGTTGTCAA
AGGCGATTCTCCTTCCTCAGCTCGATCGCATTAACCATCGAGTTTAAAGT
CCGAAGGGCTGGAGAGGAATTTTTTACCTCTATCATGTAGAAATAAGTAA
AGCCTTAAGCTTTGATTCGCTTTTAGAATGAGAGATTACATCGAACATTG
TTTACCTTCCTTCGGCATATTTTTCTAAATCCTTTCAATCTGGTGTTTGT
GTGAAAAGCACGCTGGTCACGCGTTTCAGATGGGAAATAACTGGATTCTT
TTCTTATCCAAGAGTCTCAACTCTAGCCCCTCGGGGCCTTAAACTCAATG
GTAATAGCCCTTATCAAGAATTCGTAGAAACAAAAGGAGCAAAATgatat
caaaaatataattttttattttgtatttttgtagagcaatcttttgatgt
tttttcatatatttttcatatatataaataaaattCTCAATATTAGTTCC
TTAAAATACGGATTCCAATTGAGTTATAACc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017525-exon-sc0000269-1491911889:349048..349167 | TCONS_00017525-exon-sc0000269-1491911889:349048..349167 | Clytia hemisphaerica | exon |
| TCONS_00017525-exon-sc0000269-1510915933:349048..349167 | TCONS_00017525-exon-sc0000269-1510915933:349048..349167 | Clytia hemisphaerica | exon |
| TCONS_00017525-exon-sc0000269-1575043694:349048..349167 | TCONS_00017525-exon-sc0000269-1575043694:349048..349167 | Clytia hemisphaerica | exon |
| TCONS_00017525-exon-sc0000269-1491911889:356817..357828 | TCONS_00017525-exon-sc0000269-1491911889:356817..357828 | Clytia hemisphaerica | exon |
| TCONS_00017525-exon-sc0000269-1510915933:356817..357828 | TCONS_00017525-exon-sc0000269-1510915933:356817..357828 | Clytia hemisphaerica | exon |
| TCONS_00017525-exon-sc0000269-1575043694:356817..357828 | TCONS_00017525-exon-sc0000269-1575043694:356817..357828 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000269 | supercontig | sc0000269:349048..357828 + |
Blast
The following BLAST results are available for this feature:
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