TCONS_00017483 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017483
Unique NameTCONS_00017483
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length498

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017483 ID=TCONS_00017483|Name=TCONS_00017483|organism=Clytia hemisphaerica|type=transcript|length=498bp
acaaattttcaaatattgattTGCCATCTTGCATCATCAGAACAAAATCA
TGGAAACTGACTCTGTCATCACAATTGGAATCAAGTTcacgaaaatattt
ttgcatatttatCTCATccatatttttatatttcactTTCATTCCTTCtt
taaaatcctcaaaatttatAAATCCTTTTCCTCTCAAATCAAAAGCTTGA
AAAATTTCCCTCATTTCTTcatatttatctttatattGTCTTTGACTCTC
AATATGATTCCACAATTCTTGTTTTGATAGCAGATTATTTGGTTTTTGTT
CAGGGATTGTTTTTCCATCAATTTTCCCAGACTTGTTAAAAAGTGTTTCC
AACTCAAAAGGTGAAGGTTTATGGCCAAATAAACagatataaaatatttt
gagttGGTGTCTATTGAGATAACCAAGGTTTTCCTTATCAGCAAAAGAAA
ATGATCTAATAAAGTGCTCATCCATCATTTATTTTGATTAAACTAAAc
Run BLAST on NCBI

protein sequence of TCONS_00017483-protein

>TCONS_00017483-protein ID=TCONS_00017483-protein|Name=TCONS_00017483-protein|organism=Clytia hemisphaerica|type=polypeptide|length=159bp
MMDEHFIRSFSFADKENLGYLNRHQLKIFYICLFGHKPSPFELETLFNKS
GKIDGKTIPEQKPNNLLSKQELWNHIESQRQYKDKYEEMREIFQAFDLRG
KGFINFEDFKEGMKVKYKNMDEINMQKYFRELDSNCDDRVSFHDFVLMMQ
DGKSIFENL
Run BLAST on NCBI

transcript from alignment at sc0000267:409920..410417

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017483 ID=TCONS_00017483|Name=TCONS_00017483|organism=Clytia hemisphaerica|type=transcript|length=498bp|location=Sequence derived from alignment at sc0000267:409920..410417 (Clytia hemisphaerica)
gTTTAGTTTAATCAAAATAAATGATGGATGAGCACTTTATTAGATCATTT
TCTTTTGCTGATAAGGAAAACCTTGGTTATCTCAATAGACACCaactcaa
aatattttatatctGTTTATTTGGCCATAAACCTTCACCTTTTGAGTTGG
AAACACTTTTTAACAAGTCTGGGAAAATTGATGGAAAAACAATCCCTGAA
CAAAAACCAAATAATCTGCTATCAAAACAAGAATTGTGGAATCATATTGA
GAGTCAAAGACaatataaagataaatatgAAGAAATGAGGGAAATTTTTC
AAGCTTTTGATTTGAGAGGAAAAGGATTTataaattttgaggattttaaa
GAAGGAATGAAagtgaaatataaaaatatggATGAGataaatatgcaaaa
atattttcgtgAACTTGATTCCAATTGTGATGACAGAGTCAGTTTCCATG
ATTTTGTTCTGATGATGCAAGATGGCAaatcaatatttgaaaatttgt

Coding sequence (CDS) from alignment at sc0000267:409920..410417

>TCONS_00017483 ID=TCONS_00017483|Name=TCONS_00017483|organism=Clytia hemisphaerica|type=CDS|length=477bp|location=Sequence derived from alignment at sc0000267:409920..410417 (Clytia hemisphaerica)
ATGATGGATGAGCACTTTATTAGATCATTTTCTTTTGCTGATAAGGAAAA
CCTTGGTTATCTCAATAGACACCaactcaaaatattttatatctGTTTAT
TTGGCCATAAACCTTCACCTTTTGAGTTGGAAACACTTTTTAACAAGTCT
GGGAAAATTGATGGAAAAACAATCCCTGAACAAAAACCAAATAATCTGCT
ATCAAAACAAGAATTGTGGAATCATATTGAGAGTCAAAGACaatataaag
ataaatatgAAGAAATGAGGGAAATTTTTCAAGCTTTTGATTTGAGAGGA
AAAGGATTTataaattttgaggattttaaaGAAGGAATGAAagtgaaata
taaaaatatggATGAGataaatatgcaaaaatattttcgtgAACTTGATT
CCAATTGTGATGACAGAGTCAGTTTCCATGATTTTGTTCTGATGATGCAA
GATGGCAaatcaatatttgaaaatttg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009783XLOC_009783Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017483-proteinTCONS_00017483-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017483-exon-sc0000267-1491911889:409920..410417TCONS_00017483-exon-sc0000267-1491911889:409920..410417Clytia hemisphaericaexon
TCONS_00017483-exon-sc0000267-1510915933:409920..410417TCONS_00017483-exon-sc0000267-1510915933:409920..410417Clytia hemisphaericaexon
TCONS_00017483-exon-sc0000267-1575043694:409920..410417TCONS_00017483-exon-sc0000267-1575043694:409920..410417Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000267supercontigsc0000267:409920..410417 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
17.8003	14.2456	7.64476	5.98336	1.65549	1.43901	1.73611	1.47756	0.413791	1.66578	0.124373	0.490546	0.326576	1.01746	0.697074	0.44884	1.93527	1.41685	0	0.409667	2.49253	2.08417	26.4619	21.2424	1.05442	3.99944	1.68329	1.79645	5.45018	8.05166
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR018247EF_Hand_1_Ca_BS
IPR011992EF-hand-dom_pair
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005509 calcium ion binding
Blast
[Close]
BLAST of TCONS_00017483 vs. Swiss-Prot (Human)
Match: EFC11 (EF-hand calcium-binding domain-containing protein 11 OS=Homo sapiens GN=EFCAB11 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 6.368e-16
Identity = 46/148 (31.08%), Postives = 77/148 (52.03%), Query Frame = -3 
Query:   20 FIRSFSFADKENLGYLNRHQLKIFYICLFGHKPSPFELETLFNKSGKIDGKTIPEQKPNNLLSKQELWNHIESQRQYKDKYEEMREIFQAFDLRGKGFINFEDFKEGMKVKYKNMDEINMQKYFRELDSNCDDRVSFHDFVLMMQDGK 463
            ++  F   D+++ GYL+R   K   + LFG+KPS  E++++ +         + E   N +  K+E      +QR Y++   E+R IF AFD   +GF+  EDFK+  +     + E  + + FRE+D + D  VSF DF   +  G+
Sbjct:   23 WVEVFKACDEDHKGYLSREDFKTAVVMLFGYKPSKIEVDSVMSSINPNTSGILLEGFLNIVRKKKE------AQR-YRN---EVRHIFTAFDTYYRGFLTLEDFKKAFRQVAPKLPERTVLEVFREVDRDSDGHVSFRDFEYALNYGQ 160
The following BLAST results are available for this feature:
BLAST of TCONS_00017483 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
EFC116.368e-1631.08EF-hand calcium-binding domain-containing protein ... [more]
back to top