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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017482 ID=TCONS_00017482|Name=TCONS_00017482|organism=Clytia hemisphaerica|type=transcript|length=1822bp
AAAAGCAGCAGAGTTATGCTCTTGACAGTCTTTTTTATCGAAGGTTTAAA
GCATGTATTACAGTCATTTCATCTTCAGATTCATTCTTAATGTTGACAAT
GCTTCTTGGTTTGAGCATCGGTCAACAACTTGTCATTTTCAACGTTGGCA
TACTACCAAGTAACTTCATGGAGGTACTTGGTGACAAAAATAAAACTGAA
ATGAAAAGCCTTTTAATCAAAGCTTTTACATTGATTGTAACTATTGCTTT
GTTTAATAGCGCTTTAAAGGCTGTCTCGGGATATCTTTATTTACATTGGA
GGAAACTGTTGACAATATACCTCCATAAAAACTATTTGCAAGGCTCTATA
CATTATGCTTTGTCATCTAGCTTAACAGATGTAAAAATTGACAACGTGGA
TCAAAGAATAACACAAGATGTTGATAGATTATGTACATCACTTAGTACAA
TCATTGGAAAGATTGTAATATCTCCACTTATTATTTTGTATTACTCAATA
AAATGCTTCCATGCAACAGGTGCTACTGGACCATTGATTATTTATGCTTA
TTTTCTCATCGGCACATTCATGAACAAACTTATCATGTCTTTTATTGTCA
ATCTTGTTTATAATCAAGAAGCTAGAGAAGGTGACTTCAGATTCAAACAC
ATGAAAATCAGATCATTTTCTGAATCAATAGCCATTATTGGATCTGAAAT
TCACGAGCTTTTCAAAGTTAATCAATGTTTAAACAGGTTGTTGCCAGTTC
AAAGAAGTATCGTGAATGCTGAGATAATTTTGAATATCTCAATTAACTTT
ATTGACTACCTTGGCTCAATGATTAGCTATTTTGTTATTAGTATTCCAAT
TTTTGCTGGAAAGTACGACAACTTAACACCAGTTCAATTAAGTGCAGTAA
TCAGCAAAAATGCATTTGTGTCCATGTATCTCATCAACTGTTTTAGTACT
TTGGTGGACCTCTCAACTCAAATTACTGATATTTCTGGTTATTGTCACCG
TATTGGGGAGCTTATTGAGACAATGAACGATGAAAACTCTGCAAAGCAAG
ACAACAAACAACATGTTTTGGTGAGTCAAAAGGAAGATGGTTCACTtatc
aaaatatctaacttgACCTACACATCACCCGTCTCTGGAGACAATTTGCT
TTCAGGGTTGAATTTGGaagtttttccaaaaagaaacCTTTTAATCTTAG
GGAGAACTGGTATCGGAAAATCATCCTTATTCCGAATTTTGAGAGATTTA
TGGCAACCTGTTAGAGGAAGTGTAACATTCAGTCAAGTTTTGTTTTCTAA
GGAGAACTCTATTATGTTTTTACCTCAAATGCCAATTTTTACAAATGGGT
CACTTTTGGAGCAAATAATTTATCCTAACCTAATAATAACTTCAAAAAGG
TCACATAAAATGTTGGATAAAGTAGAAAGAGTACTGGACGATGTTGGTTT
GACAAGCTTAATCGATCGAGCTGGGGGATTAGATGTTAATCCATATTGGG
ATTGGGAAAGAAATGTCTCCCCAGGTGAAATGCAAAGATTGACCTTTGCT
CGTTTATTTTACCATCGACCAAAGCTAGCATTCTTAGATGAAGCAACAAG
CTCAATGGGTCTTTCAGAGGAAGAGTGTTTTTACAGATATTGCGAGCAAC
TTGATATCACATTTGTCAGTATAAGCCATCATGACTCATTGAAAGAATAC
CATCATAATTATTTGAAAATCAACGAGGGTGGTTCCTGGGAGTACGGAGA
ATTGTGAGTcagatttgtttttattttgttctgaACCTTTAACTAACTTT
TTATAGATTTGTTTTGTTAATC Run BLAST on NCBI protein sequence of TCONS_00017482-protein >TCONS_00017482-protein ID=TCONS_00017482-protein|Name=TCONS_00017482-protein|organism=Clytia hemisphaerica|type=polypeptide|length=584bp
KQQSYALDSLFYRRFKACITVISSSDSFLMLTMLLGLSIGQQLVIFNVGI
LPSNFMEVLGDKNKTEMKSLLIKAFTLIVTIALFNSALKAVSGYLYLHWR
KLLTIYLHKNYLQGSIHYALSSSLTDVKIDNVDQRITQDVDRLCTSLSTI
IGKIVISPLIILYYSIKCFHATGATGPLIIYAYFLIGTFMNKLIMSFIVN
LVYNQEAREGDFRFKHMKIRSFSESIAIIGSEIHELFKVNQCLNRLLPVQ
RSIVNAEIILNISINFIDYLGSMISYFVISIPIFAGKYDNLTPVQLSAVI
SKNAFVSMYLINCFSTLVDLSTQITDISGYCHRIGELIETMNDENSAKQD
NKQHVLVSQKEDGSLIKISNLTYTSPVSGDNLLSGLNLEVFPKRNLLILG
RTGIGKSSLFRILRDLWQPVRGSVTFSQVLFSKENSIMFLPQMPIFTNGS
LLEQIIYPNLIITSKRSHKMLDKVERVLDDVGLTSLIDRAGGLDVNPYWD
WERNVSPGEMQRLTFARLFYHRPKLAFLDEATSSMGLSEEECFYRYCEQL
DITFVSISHHDSLKEYHHNYLKINEGGSWEYGEL Run BLAST on NCBI transcript from alignment at sc0000267:404267..406088 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017482 ID=TCONS_00017482|Name=TCONS_00017482|organism=Clytia hemisphaerica|type=transcript|length=1822bp|location=Sequence derived from alignment at sc0000267:404267..406088 (Clytia hemisphaerica)
GATTAACAAAACAAATCTATAAAAAGTTAGTTAAAGGTtcagaacaaaat
aaaaacaaatctgACTCACAATTCTCCGTACTCCCAGGAACCACCCTCGT
TGATTTTCAAATAATTATGATGGTATTCTTTCAATGAGTCATGATGGCTT
ATACTGACAAATGTGATATCAAGTTGCTCGCAATATCTGTAAAAACACTC
TTCCTCTGAAAGACCCATTGAGCTTGTTGCTTCATCTAAGAATGCTAGCT
TTGGTCGATGGTAAAATAAACGAGCAAAGGTCAATCTTTGCATTTCACCT
GGGGAGACATTTCTTTCCCAATCCCAATATGGATTAACATCTAATCCCCC
AGCTCGATCGATTAAGCTTGTCAAACCAACATCGTCCAGTACTCTTTCTA
CTTTATCCAACATTTTATGTGACCTTTTTGAAGTTATTATTAGGTTAGGA
TAAATTATTTGCTCCAAAAGTGACCCATTTGTAAAAATTGGCATTTGAGG
TAAAAACATAATAGAGTTCTCCTTAGAAAACAAAACTTGACTGAATGTTA
CACTTCCTCTAACAGGTTGCCATAAATCTCTCAAAATTCGGAATAAGGAT
GATTTTCCGATACCAGTTCTCCCTAAGATTAAAAGgtttctttttggaaa
aacttCCAAATTCAACCCTGAAAGCAAATTGTCTCCAGAGACGGGTGATG
TGTAGGTcaagttagatattttgataAGTGAACCATCTTCCTTTTGACTC
ACCAAAACATGTTGTTTGTTGTCTTGCTTTGCAGAGTTTTCATCGTTCAT
TGTCTCAATAAGCTCCCCAATACGGTGACAATAACCAGAAATATCAGTAA
TTTGAGTTGAGAGGTCCACCAAAGTACTAAAACAGTTGATGAGATACATG
GACACAAATGCATTTTTGCTGATTACTGCACTTAATTGAACTGGTGTTAA
GTTGTCGTACTTTCCAGCAAAAATTGGAATACTAATAACAAAATAGCTAA
TCATTGAGCCAAGGTAGTCAATAAAGTTAATTGAGATATTCAAAATTATC
TCAGCATTCACGATACTTCTTTGAACTGGCAACAACCTGTTTAAACATTG
ATTAACTTTGAAAAGCTCGTGAATTTCAGATCCAATAATGGCTATTGATT
CAGAAAATGATCTGATTTTCATGTGTTTGAATCTGAAGTCACCTTCTCTA
GCTTCTTGATTATAAACAAGATTGACAATAAAAGACATGATAAGTTTGTT
CATGAATGTGCCGATGAGAAAATAAGCATAAATAATCAATGGTCCAGTAG
CACCTGTTGCATGGAAGCATTTTATTGAGTAATACAAAATAATAAGTGGA
GATATTACAATCTTTCCAATGATTGTACTAAGTGATGTACATAATCTATC
AACATCTTGTGTTATTCTTTGATCCACGTTGTCAATTTTTACATCTGTTA
AGCTAGATGACAAAGCATAATGTATAGAGCCTTGCAAATAGTTTTTATGG
AGGTATATTGTCAACAGTTTCCTCCAATGTAAATAAAGATATCCCGAGAC
AGCCTTTAAAGCGCTATTAAACAAAGCAATAGTTACAATCAATGTAAAAG
CTTTGATTAAAAGGCTTTTCATTTCAGTTTTATTTTTGTCACCAAGTACC
TCCATGAAGTTACTTGGTAGTATGCCAACGTTGAAAATGACAAGTTGTTG
ACCGATGCTCAAACCAAGAAGCATTGTCAACATTAAGAATGAATCTGAAG
ATGAAATGACTGTAATACATGCTTTAAACCTTCGATAAAAAAGACTGTCA
AGAGCATAACTCTGCTGCTTTT Coding sequence (CDS) from alignment at sc0000267:404267..406088 >TCONS_00017482 ID=TCONS_00017482|Name=TCONS_00017482|organism=Clytia hemisphaerica|type=CDS|length=1755bp|location=Sequence derived from alignment at sc0000267:404267..406088 (Clytia hemisphaerica)
TCACAATTCTCCGTACTCCCAGGAACCACCCTCGTTGATTTTCAAATAAT
TATGATGGTATTCTTTCAATGAGTCATGATGGCTTATACTGACAAATGTG
ATATCAAGTTGCTCGCAATATCTGTAAAAACACTCTTCCTCTGAAAGACC
CATTGAGCTTGTTGCTTCATCTAAGAATGCTAGCTTTGGTCGATGGTAAA
ATAAACGAGCAAAGGTCAATCTTTGCATTTCACCTGGGGAGACATTTCTT
TCCCAATCCCAATATGGATTAACATCTAATCCCCCAGCTCGATCGATTAA
GCTTGTCAAACCAACATCGTCCAGTACTCTTTCTACTTTATCCAACATTT
TATGTGACCTTTTTGAAGTTATTATTAGGTTAGGATAAATTATTTGCTCC
AAAAGTGACCCATTTGTAAAAATTGGCATTTGAGGTAAAAACATAATAGA
GTTCTCCTTAGAAAACAAAACTTGACTGAATGTTACACTTCCTCTAACAG
GTTGCCATAAATCTCTCAAAATTCGGAATAAGGATGATTTTCCGATACCA
GTTCTCCCTAAGATTAAAAGgtttctttttggaaaaacttCCAAATTCAA
CCCTGAAAGCAAATTGTCTCCAGAGACGGGTGATGTGTAGGTcaagttag
atattttgataAGTGAACCATCTTCCTTTTGACTCACCAAAACATGTTGT
TTGTTGTCTTGCTTTGCAGAGTTTTCATCGTTCATTGTCTCAATAAGCTC
CCCAATACGGTGACAATAACCAGAAATATCAGTAATTTGAGTTGAGAGGT
CCACCAAAGTACTAAAACAGTTGATGAGATACATGGACACAAATGCATTT
TTGCTGATTACTGCACTTAATTGAACTGGTGTTAAGTTGTCGTACTTTCC
AGCAAAAATTGGAATACTAATAACAAAATAGCTAATCATTGAGCCAAGGT
AGTCAATAAAGTTAATTGAGATATTCAAAATTATCTCAGCATTCACGATA
CTTCTTTGAACTGGCAACAACCTGTTTAAACATTGATTAACTTTGAAAAG
CTCGTGAATTTCAGATCCAATAATGGCTATTGATTCAGAAAATGATCTGA
TTTTCATGTGTTTGAATCTGAAGTCACCTTCTCTAGCTTCTTGATTATAA
ACAAGATTGACAATAAAAGACATGATAAGTTTGTTCATGAATGTGCCGAT
GAGAAAATAAGCATAAATAATCAATGGTCCAGTAGCACCTGTTGCATGGA
AGCATTTTATTGAGTAATACAAAATAATAAGTGGAGATATTACAATCTTT
CCAATGATTGTACTAAGTGATGTACATAATCTATCAACATCTTGTGTTAT
TCTTTGATCCACGTTGTCAATTTTTACATCTGTTAAGCTAGATGACAAAG
CATAATGTATAGAGCCTTGCAAATAGTTTTTATGGAGGTATATTGTCAAC
AGTTTCCTCCAATGTAAATAAAGATATCCCGAGACAGCCTTTAAAGCGCT
ATTAAACAAAGCAATAGTTACAATCAATGTAAAAGCTTTGATTAAAAGGC
TTTTCATTTCAGTTTTATTTTTGTCACCAAGTACCTCCATGAAGTTACTT
GGTAGTATGCCAACGTTGAAAATGACAAGTTGTTGACCGATGCTCAAACC
AAGAAGCATTGTCAACATTAAGAATGAATCTGAAGATGAAATGACTGTAA
TACATGCTTTAAACCTTCGATAAAAAAGACTGTCAAGAGCATAACTCTGC
TGCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017482-exon-sc0000267-1491911889:404267..406088 | TCONS_00017482-exon-sc0000267-1491911889:404267..406088 | Clytia hemisphaerica | exon |
| TCONS_00017482-exon-sc0000267-1510915933:404267..406088 | TCONS_00017482-exon-sc0000267-1510915933:404267..406088 | Clytia hemisphaerica | exon |
| TCONS_00017482-exon-sc0000267-1575043694:404267..406088 | TCONS_00017482-exon-sc0000267-1575043694:404267..406088 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000267 | supercontig | sc0000267:404267..406088 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0016887 | ATPase activity |
| GO:0005524 | ATP binding |
| GO:0042626 | ATPase activity, coupled to transmembrane movement of substances |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055085 | transmembrane transport |
| GO:0006810 | transport |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055085 |
transmembrane transport |
| biological_process |
GO:0006810 |
transport |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0016887 |
ATPase activity |
| molecular_function |
GO:0042626 |
ATPase activity, coupled to transmembrane movement of substances |
| molecular_function |
GO:0005524 |
ATP binding |
Blast
BLAST of TCONS_00017482 vs. Swiss-Prot (Human)
Match: ABCD4 (ATP-binding cassette sub-family D member 4 OS=Homo sapiens GN=ABCD4 PE=1 SV=1) HSP 1 Score: 449.899 bits (1156), Expect = 5.703e-150 Identity = 251/594 (42.26%), Postives = 368/594 (61.95%), Query Frame = 3
Query: 21 LDSLFYRRFKACITVI---SSSDSFLMLTMLLGLSIGQQLVIFNVGILPSNFMEVLGDKNKTEMKSLLIKAFTLIVTIALFNSALKAVSGY----LYLHWRKLLTIYLHKNYLQGSIHYALSSSLTDVKIDNVDQRITQDVDRLCTSLSTIIGKIVISPLIILYYSIKCFHATGATGPLIIYAYFLIGTFMNKLIMSFIVNLVYNQEAREGDFRFKHMKIRSFSESIAIIGSEIHELFKVNQCLNRLLPVQRSIVNAEIILNISINFIDYLGSMISYFVISIPIFAGKYDNLTPVQLSAVISKNAFVSMYLINCFSTLVDLSTQITDISGYCHRIGELIETMND------------ENSAKQDNKQHVLVSQKEDGSLIKISNLTYTSPVSGDNLLSGLNLEVFPKRNLLILGRTGIGKSSLFRILRDLWQPVRGSVTFSQVLFS-KENSIMFLPQMPIFTNGSLLEQIIYPNLIITSKRSHKMLDKVERVLDDVGLTSLIDRAGGLDVNPYWDWERNVSPGEMQRLTFARLFYHRPKLAFLDEATSSMGLSEEECFYRYCEQLDITFVSISHHDSLKEYHHNYLKINEGGSWE 1742
LD F +RF + V+ SS + LM LL L++ +Q VI+ VG++PS + VLG+K+ K+L A LIV NS LK+ + LY+ WRK LT +LH+ Y +G +Y L+ D IDN DQRI+QDV+R C LS++ K++ISP ++YY+ +CF +TG GP+ I+ YF++GT +NK +M IV + +QE EGDFRFKHM+IR +E A + E + ++ L RLL QR +++ E+ L I IN DYLGS++SY VI+IPIF+G Y +L+P +LS ++SKNAFV +YLI+CF+ L+DLST ++D++GY HRIG+L ET+ D E+ D ++ D + + + ++ ++P S L+ L+L++ ++LLI G TG GK+SL R+L LW RGSV Q+L + ++FLPQ P FT+G+L EQ+IYP + +++ R L+ GL++L+ R GLD W+W +SPGEMQRL+FARLFY +PK A LDEATS++ E YR +QL +TF+S+ H SL+++H LK+ GG WE
Sbjct: 16 LDLQFLQRFLQILKVLFPSWSSQNALMFLTLLCLTLLEQFVIYQVGLIPSQYYGVLGNKDLEGFKTLTFLAVMLIV----LNSTLKSFDQFTCNLLYVSWRKDLTEHLHRLYFRGRAYYTLNVLRDD--IDNPDQRISQDVERFCRQLSSMASKLIISPFTLVYYTYQCFQSTGWLGPVSIFGYFILGTVVNKTLMGPIVMKLVHQEKLEGDFRFKHMQIRVNAEPAAFYRAGHVEHMRTDRRLQRLLQTQRELMSKELWLYIGINTFDYLGSILSYVVIAIPIFSGVYGDLSPAELSTLVSKNAFVCIYLISCFTQLIDLSTTLSDVAGYTHRIGQLRETLLDMSLKSQDCEILGESEWGLDTPPGWPAAEPADTAFL-LERVSISAPSSDKPLIKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSV---QMLTDFGPHGVLFLPQKPFFTDGTLREQVIYPLKEVYPDSGSADDERILRFLELAGLSNLVARTEGLDQQVDWNWYDVLSPGEMQRLSFARLFYLQPKYAVLDEATSALTEEVESELYRIGQQLGMTFISVGHRQSLEKFHSLVLKLCGGGRWE 599
The following BLAST results are available for this feature:
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