TCONS_00017482-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00017482-protein
Unique NameTCONS_00017482-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length584

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00017482-protein ID=TCONS_00017482-protein|Name=TCONS_00017482-protein|organism=Clytia hemisphaerica|type=polypeptide|length=584bp
KQQSYALDSLFYRRFKACITVISSSDSFLMLTMLLGLSIGQQLVIFNVGI
LPSNFMEVLGDKNKTEMKSLLIKAFTLIVTIALFNSALKAVSGYLYLHWR
KLLTIYLHKNYLQGSIHYALSSSLTDVKIDNVDQRITQDVDRLCTSLSTI
IGKIVISPLIILYYSIKCFHATGATGPLIIYAYFLIGTFMNKLIMSFIVN
LVYNQEAREGDFRFKHMKIRSFSESIAIIGSEIHELFKVNQCLNRLLPVQ
RSIVNAEIILNISINFIDYLGSMISYFVISIPIFAGKYDNLTPVQLSAVI
SKNAFVSMYLINCFSTLVDLSTQITDISGYCHRIGELIETMNDENSAKQD
NKQHVLVSQKEDGSLIKISNLTYTSPVSGDNLLSGLNLEVFPKRNLLILG
RTGIGKSSLFRILRDLWQPVRGSVTFSQVLFSKENSIMFLPQMPIFTNGS
LLEQIIYPNLIITSKRSHKMLDKVERVLDDVGLTSLIDRAGGLDVNPYWD
WERNVSPGEMQRLTFARLFYHRPKLAFLDEATSSMGLSEEECFYRYCEQL
DITFVSISHHDSLKEYHHNYLKINEGGSWEYGEL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_009782XLOC_009782Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00017482TCONS_00017482Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003439ABC_transporter-like
IPR011527ABC1_TM_dom
IPR017871ABC_transporter_CS
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0016887ATPase activity
GO:0005524ATP binding
GO:0042626ATPase activity, coupled to transmembrane movement of substances
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
GO:0006810transport
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055085 transmembrane transport
biological_process GO:0006810 transport
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0016887 ATPase activity
molecular_function GO:0042626 ATPase activity, coupled to transmembrane movement of substances
molecular_function GO:0005524 ATP binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.50.300coord: 342..583
e-value: 2.2E-33
score: 115.0
NoneNo IPR availableGENE3D1.20.1560.10coord: 12..341
e-value: 1.5E-32
score: 112.3
IPR003439ABC transporter-likePFAMPF00005ABC_trancoord: 383..533
e-value: 1.5E-16
score: 61.1
IPR003439ABC transporter-likePROSITEPS50893ABC_TRANSPORTER_2coord: 366..584
score: 12.839
IPR011527ABC transporter type 1, transmembrane domainPFAMPF06472ABC_membrane_2coord: 23..284
e-value: 3.5E-55
score: 187.2
IPR011527ABC transporter type 1, transmembrane domainPROSITEPS50929ABC_TM1Fcoord: 58..322
score: 9.836
IPR011527ABC transporter type 1, transmembrane domainSUPERFAMILY90123ABC transporter transmembrane regioncoord: 31..338
IPR017871ABC transporter, conserved sitePROSITEPS00211ABC_TRANSPORTER_1coord: 505..519
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 363..583

Blast
[Close]
BLAST of TCONS_00017482-protein vs. Swiss-Prot (Human)
Match: ABCD4 (ATP-binding cassette sub-family D member 4 OS=Homo sapiens GN=ABCD4 PE=1 SV=1)

HSP 1 Score: 449.514 bits (1155), Expect = 6.641e-152
Identity = 251/594 (42.26%), Postives = 368/594 (61.95%), Query Frame = 0 
Query:    7 LDSLFYRRFKACITVI---SSSDSFLMLTMLLGLSIGQQLVIFNVGILPSNFMEVLGDKNKTEMKSLLIKAFTLIVTIALFNSALKAVSGY----LYLHWRKLLTIYLHKNYLQGSIHYALSSSLTDVKIDNVDQRITQDVDRLCTSLSTIIGKIVISPLIILYYSIKCFHATGATGPLIIYAYFLIGTFMNKLIMSFIVNLVYNQEAREGDFRFKHMKIRSFSESIAIIGSEIHELFKVNQCLNRLLPVQRSIVNAEIILNISINFIDYLGSMISYFVISIPIFAGKYDNLTPVQLSAVISKNAFVSMYLINCFSTLVDLSTQITDISGYCHRIGELIETMND------------ENSAKQDNKQHVLVSQKEDGSLIKISNLTYTSPVSGDNLLSGLNLEVFPKRNLLILGRTGIGKSSLFRILRDLWQPVRGSVTFSQVLFS-KENSIMFLPQMPIFTNGSLLEQIIYPNLIITSKRSHKMLDKVERVLDDVGLTSLIDRAGGLDVNPYWDWERNVSPGEMQRLTFARLFYHRPKLAFLDEATSSMGLSEEECFYRYCEQLDITFVSISHHDSLKEYHHNYLKINEGGSWE 580
            LD  F +RF   + V+    SS + LM   LL L++ +Q VI+ VG++PS +  VLG+K+    K+L   A  LIV     NS LK+   +    LY+ WRK LT +LH+ Y +G  +Y L+    D  IDN DQRI+QDV+R C  LS++  K++ISP  ++YY+ +CF +TG  GP+ I+ YF++GT +NK +M  IV  + +QE  EGDFRFKHM+IR  +E  A   +   E  + ++ L RLL  QR +++ E+ L I IN  DYLGS++SY VI+IPIF+G Y +L+P +LS ++SKNAFV +YLI+CF+ L+DLST ++D++GY HRIG+L ET+ D            E+    D       ++  D + + +  ++ ++P S   L+  L+L++   ++LLI G TG GK+SL R+L  LW   RGSV   Q+L     + ++FLPQ P FT+G+L EQ+IYP   +         +++ R L+  GL++L+ R  GLD    W+W   +SPGEMQRL+FARLFY +PK A LDEATS++    E   YR  +QL +TF+S+ H  SL+++H   LK+  GG WE
Sbjct:   16 LDLQFLQRFLQILKVLFPSWSSQNALMFLTLLCLTLLEQFVIYQVGLIPSQYYGVLGNKDLEGFKTLTFLAVMLIV----LNSTLKSFDQFTCNLLYVSWRKDLTEHLHRLYFRGRAYYTLNVLRDD--IDNPDQRISQDVERFCRQLSSMASKLIISPFTLVYYTYQCFQSTGWLGPVSIFGYFILGTVVNKTLMGPIVMKLVHQEKLEGDFRFKHMQIRVNAEPAAFYRAGHVEHMRTDRRLQRLLQTQRELMSKELWLYIGINTFDYLGSILSYVVIAIPIFSGVYGDLSPAELSTLVSKNAFVCIYLISCFTQLIDLSTTLSDVAGYTHRIGQLRETLLDMSLKSQDCEILGESEWGLDTPPGWPAAEPADTAFL-LERVSISAPSSDKPLIKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSV---QMLTDFGPHGVLFLPQKPFFTDGTLREQVIYPLKEVYPDSGSADDERILRFLELAGLSNLVARTEGLDQQVDWNWYDVLSPGEMQRLSFARLFYLQPKYAVLDEATSALTEEVESELYRIGQQLGMTFISVGHRQSLEKFHSLVLKLCGGGRWE 599
The following BLAST results are available for this feature:
BLAST of TCONS_00017482-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ABCD46.641e-15242.26ATP-binding cassette sub-family D member 4 OS=Homo... [more]
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