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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017450 ID=TCONS_00017450|Name=TCONS_00017450|organism=Clytia hemisphaerica|type=transcript|length=4537bpRun BLAST on NCBI transcript from alignment at sc0000267:276064..333438- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00017450 ID=TCONS_00017450|Name=TCONS_00017450|organism=Clytia hemisphaerica|type=transcript|length=57375bp|location=Sequence derived from alignment at sc0000267:276064..333438- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00017450 vs. Swiss-Prot (Human)
Match: DYH1 (Dynein heavy chain 1, axonemal OS=Homo sapiens GN=DNAH1 PE=2 SV=4) HSP 1 Score: 2079.68 bits (5387), Expect = 0.000e+0 Identity = 1024/1524 (67.19%), Postives = 1254/1524 (82.28%), Query Frame = 3
Query: 3 KRTSFPRFYFLSDDELLEILSQTKDPTAVQPHLRKCFENIAKLTFEKDLRISEMHSGEGEIVPFSEQLYPTGNVEDWLCEVERVMKGSLREILDQALQAYAEAERTEWVLQWPGQIVIAGCQTYWTTEVSEALEDSNIVDAL-THFRNQLSELVALVRGNLSRIARLVLGALIVIEVHACDXXXXXXXXXXXXXXDFEWISQLRYYWEDEDLYIRAVNAQFKYGYEYLGNNGRLVITPLTDRCYLTLTGALHLXXXXXXXXXXXXXXXXXXXDLAKAMAIQCVVFNCSDQLDYMAMGKFFKGLATSGAWACFDEFNRIDIEVLSXXXXXXXXXXXXXXXXXERFMFEGVELLLRPTCAPFITMNPGYAGRTELPDNLKALFRPVAMMVPNYTMIAEISLFSFGFNQAKVLAKKITSTFKLSSEQLSSQDHYDFGMRAVKTVISAAGNLKRENPDMDEELICLRAIRDVNVPKFLQDDLKLFNGIVSDLFPKIKEQPIDYGALDESIRKSCLSVNIEDVDGFVTKCIQLFETTVVRHGLMLVGPTGSGKTKCYETLQRASTALKGTISPAGSTFQEVKTFVLNPKSITMGQLYGEFDLMTHEWTDGILSSLVRLGASSTTPDNKWYIFDGPVDAVWIENMNTVLDDNKKLCLTSGEIIKLSDTQTMMFEVADLAVASPATVSRCGMVYLEPRNIGLQPFVNCWLKQVPASLEPFTDKLLQLFDRFLTASLDFIRGNVREFIPTMDSSLTSSLMKLMDCFFAPFVPKEG-KIIDSQSVELLPELVEPWFIFSLVWSIGATCNQDGRKKFSNFLREHMKKEKVRMLFPGDGLVYDYQLQDGGVFNRYYGLHDQXXXXXXXXXXXWVHWMHDVKMPKISPEMKYSDIIVPTMDLVRGSFLVHLLATNKKKVMCVGPTGSGKTLCIGNRLLTGMPNEYVSNFITFSARTSANQTQDMIDGKLDKRRKGVFGPPLGKYFVLFIDDLNMPALETYGAQPPIELLRQYCDHQGWYDRKQIGAFRELVDVNLLCALGPPGGGRNPITARFTRHFNLISFCEMEDLSKQRIFSTILQSWLANIQNEE-----------IIGLSNQIVNHTIAVYNTIQTQLLPTPAKSHYTFNLRDLSKVFQGILMASTDKIDSKADMLRLWYHENCRIFQDRLVNDEDRTWFKKLLEEKLVDSFQMRFDEVVTRTPLFYGDFMIPSAEVKLYNEITNEEKMKTILEEYLEDYNQVNISQMKLVLFSDAIQHICRIGRIIRQPLGNALLLGVGGSGRQSLTRLASHIAEYDLFQIELSKSYGITEWKDDLKKLLMKAGVENKPMVFLFVDTQIKSEIFLEDLNNVLNAGDVPNIYAPDELDTIYTTMKPIVQDEGLQPTKVNLFMTYTKRVRSNIHMVICMSPIGEVFRARLRQFPSLVTCCTIDWFSEWPEQALISVANTFISEMPEVDPDNTNVEGLVKLFGTFHQSVAKKSLQYLAELSRYNYVTPTSYLELLGIFKKVLGIKKNEIMSAKNRTKTGLDKV 4535
KR++FPRFYFLSDDELLEILSQTKDPTAVQPHLRKCFENIA+L F++DL I+ M+S EGE V +YP+ NVEDWL EVER MK S+ +I+++A++AY RT+WVL WPGQ+ IAGCQTYWT EV+EALE N+ L QLS+LVALVRG LSR+ R VL ALIVIEVHA DVV K+++ENV +VNDF+WISQLRYYW + DLYIRAVNA+F YGYEYLGN+GRLVITPLTDRCYLTLTGALHL FGGAPAGPAGTGKTETTKDL KA+AIQ VVFNCSDQLD+MAMGKFFKGLA++GAWACFDEFNRIDIEVLSVVAQQI TIQ+AQ+Q+VERFMFEGVE+ L P+CA FITMNPGYAGRTELPDNLKALFRPVAMMVP+Y MI EISL+SFGFN+A VLAKKIT+TFKLSSEQLSSQDHYDFGMRAVKTVISAAGNLKRENP M+EELICLRAIRDVNVPKFLQ+DLKLF+GIVSDLFP IKE+ DYG LDE+IR++C + N++DV+GF+TKCIQL+ETTVVRHGLMLVGPTGSGK+ CY L A T+LKG S +G ++ V +VLNPKSITMGQLYGEFDL+THEWTDGI SS +R GA ++ + KWY+FDGPVDA+WIENMNTVLDDNKKLCL+SGEIIKL++ TMMFEV DLAVASPATVSRCGMVYLEP +GL PF+ CWL+++P L+P+ + LF FL S+ F+R +V+E I + + +LT SL+KL+DCFF PF+P+EG K I S+ + + EL+EPWFIFSL+WS+GAT + GR FS++LR M+ E++ +LFP +GLV+DY+L+D G+ G +D +++E++ ++ WV WM + P+ Y +IIVPTMD V+ S L+ +L TNKK V+C+GPTG+GKTL I ++LL + +Y+S+F+TFSARTSANQTQD ID KLDKRRKGVFGPPLG+ F+ FIDDLNMPALETYGAQPPIELLRQ+ DH GWYDRK IGAF+ LVD+N +CA+GPPGGGRN +T R RHFN +SF EM+++SK+RIFSTIL +WL + E+ I + +V TI VY TI +QLLPTPAKSHYTFNLRDLSKVFQG+LMA K++ + +LRLWYHENCR+F+DRLVN+EDR+WF +LL ++ ++ +++ F++V P+ YGDFM P ++VK Y IT+E KM ++EEY+EDYNQ+N +++KLVLF DA+ HICRI R +RQ LGNALLLGVGGSGR SLTRLASH+AEY+ FQIELSK+YG++EW+DD+KK+L+KAG++N P+ FLF DTQIK+E FLED+NNVLN+GD+PN+Y DE D I +TM+P +Q++GLQPTK NL YT RVRSNIHMV+CMSPIGEVFRARLRQFPSLV CCTIDWF+EWP +AL SVA F++E+PE++ ++GL+++ HQSV+KK ++YLAEL+R+NYVTP SYLELL IF ++G KK E+ +AKNR K+GLDK+
Sbjct: 1321 KRSAFPRFYFLSDDELLEILSQTKDPTAVQPHLRKCFENIARLLFQEDLEITHMYSAEGEEVQLCFSIYPSSNVEDWLREVERSMKASVHDIIEKAIRAYPTMPRTQWVLNWPGQVTIAGCQTYWTMEVAEALEAGNLRSQLFPQLCQQLSDLVALVRGKLSRMQRAVLSALIVIEVHAKDVVSKLIQENVVSVNDFQWISQLRYYWTNNDLYIRAVNAEFIYGYEYLGNSGRLVITPLTDRCYLTLTGALHLKFGGAPAGPAGTGKTETTKDLGKALAIQTVVFNCSDQLDFMAMGKFFKGLASAGAWACFDEFNRIDIEVLSVVAQQITTIQKAQQQRVERFMFEGVEIPLVPSCAVFITMNPGYAGRTELPDNLKALFRPVAMMVPDYAMITEISLYSFGFNEASVLAKKITTTFKLSSEQLSSQDHYDFGMRAVKTVISAAGNLKRENPSMNEELICLRAIRDVNVPKFLQEDLKLFSGIVSDLFPTIKEEDTDYGILDEAIREACRNSNLKDVEGFLTKCIQLYETTVVRHGLMLVGPTGSGKSTCYRVLAAAMTSLKGQPSISGGMYEAVNYYVLNPKSITMGQLYGEFDLLTHEWTDGIFSSFIRAGAITSDTNKKWYMFDGPVDAIWIENMNTVLDDNKKLCLSSGEIIKLTEAMTMMFEVQDLAVASPATVSRCGMVYLEPSILGLMPFIECWLRKLPPLLKPYEEHFKALFVSFLEESISFVRSSVKEVIASTNCNLTMSLLKLLDCFFKPFLPREGLKKIPSEKLSRIVELIEPWFIFSLIWSVGATGDSSGRTSFSHWLRLKMENEQLTLLFPEEGLVFDYRLEDAGI----SGTNDSEDEEEEYKQVAWVKWMDSSAPFTMVPDTNYCNIIVPTMDTVQMSHLLDMLLTNKKPVLCIGPTGTGKTLTISDKLLKNLALDYISHFLTFSARTSANQTQDFIDSKLDKRRKGVFGPPLGRNFIFFIDDLNMPALETYGAQPPIELLRQWMDHGGWYDRKIIGAFKNLVDINFVCAMGPPGGGRNTVTPRLMRHFNYLSFAEMDEVSKKRIFSTILGNWLDGLLGEKSYRERVPGAPHIAHFTEPLVEATIMVYATITSQLLPTPAKSHYTFNLRDLSKVFQGMLMADPAKVEDQVQLLRLWYHENCRVFRDRLVNEEDRSWFDQLL-KRCMEQWEVTFNKVCPFQPILYGDFMSPGSDVKSYELITSESKMMQVIEEYIEDYNQINTAKLKLVLFMDAMSHICRISRTLRQALGNALLLGVGGSGRSSLTRLASHMAEYECFQIELSKNYGMSEWRDDVKKVLLKAGLQNLPITFLFSDTQIKNESFLEDINNVLNSGDIPNLYTADEQDQIVSTMRPYIQEQGLQPTKANLMAAYTGRVRSNIHMVLCMSPIGEVFRARLRQFPSLVNCCTIDWFNEWPAEALKSVATVFLNEIPELESSQEEIQGLIQVCVYIHQSVSKKCIEYLAELTRHNYVTPKSYLELLHIFSILIGQKKLELKTAKNRMKSGLDKL 2839 The following BLAST results are available for this feature:
BLAST of TCONS_00017450 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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