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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017438 ID=TCONS_00017438|Name=TCONS_00017438|organism=Clytia hemisphaerica|type=transcript|length=1621bpRun BLAST on NCBI protein sequence of TCONS_00017438-protein >TCONS_00017438-protein ID=TCONS_00017438-protein|Name=TCONS_00017438-protein|organism=Clytia hemisphaerica|type=polypeptide|length=489bp MALNLRLQQIVLGLKNKSEQIRHRTAHELQHFVTTELREATSDQYPDLMDRun BLAST on NCBI transcript from alignment at sc0000267:480441..487416+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00017438 ID=TCONS_00017438|Name=TCONS_00017438|organism=Clytia hemisphaerica|type=transcript|length=6976bp|location=Sequence derived from alignment at sc0000267:480441..487416+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000267:480441..487416+ >TCONS_00017438 ID=TCONS_00017438|Name=TCONS_00017438|organism=Clytia hemisphaerica|type=CDS|length=14700bp|location=Sequence derived from alignment at sc0000267:480441..487416+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00017438 vs. Swiss-Prot (Human)
Match: MTOR (Serine/threonine-protein kinase mTOR OS=Homo sapiens GN=MTOR PE=1 SV=1) HSP 1 Score: 444.506 bits (1142), Expect = 5.965e-138 Identity = 253/503 (50.30%), Postives = 334/503 (66.40%), Query Frame = 1
Query: 85 LQQIVLGLKNKSEQIRHRTAHELQHFVTTELREATSDQYPDLMDTLIHFIFDLVNSTDVNEKKGGVLAIVCLIGVDGGNATRTSRFANYLRNMLPSNDVSVMELVAKAVGRLAQVGGTYAADYVEFEVKKSLEWLSGDRHEGRRHAAVLVLRELAVNAPTFFFQHVQSFFDNFYNAVRDPKPAIREGAVEALRACFAICAQRETKKNHYTHWYQQVYEEAKKGFENTANTKEKGTGLTRDDKVHGSLLVMQELIRNSSSEGERLRQQMEE-TYGEKPNDNIRSREMTFSKSTR----FLGNHGHQHQLS--LLPLLESGNHH-------IPNS------QSRFCKDFMESKFDEICTLVLKQKSSARSLCQHTLLTFLPQLAAFKPKDFVKS-HLQDTILHMIQQTKKERERSAAFEAIGLLAFAVKNDVNIAHWRHWRDVLKSIKALLPSSNRDQTNRKKTNHVDPMVFACVSMTAKAVGPKMAKTDTLFKEIIDKMLIVGL 1530
LQQ GLK+++E+ R + A ELQH+VT ELRE + ++ D L H IF+LV+S+D NE+KGG+LAI LIGV+GGNATR RFANYLRN+LPSND VME+ +KA+GRLA G T+ A+YVEFEVK++LEWL DR+EGRRHAAVLVLRELA++ PTFFFQ VQ FFDN + AV DPK AIREGAV ALRAC + QRE K+ WY+ +EEA+KGF+ T KEK G+ RDD++HG+LL++ EL+R SS EGERLR++MEE T + +D M F R F Q Q S L+ LL +H P+ +SR C+D ME KFD++C VLK ++S SL Q T+L LP+LAAF+P F + +LQDT+ H++ KKE+ER+AAF+A+GLL+ AV+++ + R VL I+A LP + R+K VD VF C+SM A+A+GP + + KE+++ ML VGL
Sbjct: 22 LQQFASGLKSRNEETRAKAAKELQHYVTMELREMSQEESTRFYDQLNHHIFELVSSSDANERKGGILAIASLIGVEGGNATRIGRFANYLRNLLPSNDPVVMEMASKAIGRLAMAGDTFTAEYVEFEVKRALEWLGADRNEGRRHAAVLVLRELAISVPTFFFQQVQPFFDNIFVAVWDPKQAIREGAVAALRACLILTTQREPKEMQKPQWYRHTFEEAEKGFDETL-AKEK--GMNRDDRIHGALLILNELVRISSMEGERLREEMEEITQQQLVHDKYCKDLMGFGTKPRHITPFTSFQAVQPQQSNALVGLLGYSSHQGLMGFGTSPSPAKSTLVESRCCRDLMEEKFDQVCQWVLKCRNSKNSLIQMTILNLLPRLAAFRPSAFTDTQYLQDTMNHVLSCVKKEKERTAAFQALGLLSVAVRSEFKVYLPR----VLDIIRAALPPKDFAH-KRQKAMQVDATVFTCISMLARAMGPGIQQD---IKELLEPMLAVGL 513 The following BLAST results are available for this feature:
BLAST of TCONS_00017438 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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