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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017415 ID=TCONS_00017415|Name=TCONS_00017415|organism=Clytia hemisphaerica|type=transcript|length=913bpRun BLAST on NCBI protein sequence of TCONS_00017415-protein >TCONS_00017415-protein ID=TCONS_00017415-protein|Name=TCONS_00017415-protein|organism=Clytia hemisphaerica|type=polypeptide|length=272bp HSLKEKEPVPLNVHHMPICITFGFIEDEKKGQQLIIDPEEKEESIIDGKLRun BLAST on NCBI transcript from alignment at sc0000267:125602..161735+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00017415 ID=TCONS_00017415|Name=TCONS_00017415|organism=Clytia hemisphaerica|type=transcript|length=36134bp|location=Sequence derived from alignment at sc0000267:125602..161735+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000267:125602..161735+ >TCONS_00017415 ID=TCONS_00017415|Name=TCONS_00017415|organism=Clytia hemisphaerica|type=CDS|length=7371bp|location=Sequence derived from alignment at sc0000267:125602..161735+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00017415 vs. Swiss-Prot (Human)
Match: EXOS9 (Exosome complex component RRP45 OS=Homo sapiens GN=EXOSC9 PE=1 SV=3) HSP 1 Score: 106.301 bits (264), Expect = 6.646e-26 Identity = 63/190 (33.16%), Postives = 106/190 (55.79%), Query Frame = 2
Query: 2 HSLKEKEPVPLNVHHMPICITFGFIEDEKKGQQLIIDPEEKEESIIDGKLMMAFNIHNEVCCVQMSGGVSVDYEQLLNCGNIAALKAEEITVVLKEILEEERIKRLPKKIEKKAG----LKTPATPREFITKTTAEPTEVEMITLSSDENDTARNPIAIVSDESEPLKEQVTNYLGKGTASLGEGGESAW 559
++ +E++PVPL++HHMPIC++F F + +G L++DP E+EE ++DG L++A N H E+C +Q SGG+ + +Q+L C IA +K EIT ++ + LE + +K+ K+ G ++ A R K P + + ++E P + V S P+ GTA +GEG E++W
Sbjct: 175 YTPEERDPVPLSIHHMPICVSFAFFQ---QGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIMLLKDQVLRCSKIAGVKVAEITELILKALEND------QKVRKEGGKFGFAESIANQRITAFKMEKAPIDTSDVEEKAEEIIAEAEPPSEVV--STPV------LWTPGTAQIGEGVENSW 347 The following BLAST results are available for this feature:
BLAST of TCONS_00017415 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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