TCONS_00017414 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017414
Unique NameTCONS_00017414
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length538

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017414 ID=TCONS_00017414|Name=TCONS_00017414|organism=Clytia hemisphaerica|type=transcript|length=538bp
tttagataacaaagaaaaatagaaaaataagaaaatcaacaaattaaTAT
GAAAGCATCCAGTGTAAGGTTTACAACTTGTGAGAAGCAGTTTGTTGGCA
AGTCAATTGAAAGTGGCATTAGATTGGATGGTCGACAAGCATATGATTAC
AGAAATCTTGAAATCAACTTTGGATTAGATTATGGCTATTGTGAGGTCAC
ATTAGGAGATACAAGAGCACTTGCACAGACGTCTTGTGAGTTGATCAAAC
CATTAGATTCACGACCAACTGATGGCCAGCTCTTCATCAATGTTGACTTA
TCACCTATGGCTTCCTGTTCCTTCGAAAGTGGAAGaatGACAAGTGAAGG
GGTTGAGATTAACCGACTGATCGACCGAGTACTAAAAGAATCTAGACCAA
TTGATACTGAGTCTTTATGCGTTCTTGCCGGAGAAAAGgtTTGGTCGGTT
CGTGTTGATGTTTTGGTTTTGAATCACAGTGGAAATATCTTGGATTGCTG
TTGTATAGCTGCCATTGCATCTCTGGCCCATTTCAGGT
Run BLAST on NCBI

protein sequence of TCONS_00017414-protein

>TCONS_00017414-protein ID=TCONS_00017414-protein|Name=TCONS_00017414-protein|organism=Clytia hemisphaerica|type=polypeptide|length=163bp
MKASSVRFTTCEKQFVGKSIESGIRLDGRQAYDYRNLEINFGLDYGYCEV
TLGDTRALAQTSCELIKPLDSRPTDGQLFINVDLSPMASCSFESGRMTSE
GVEINRLIDRVLKESRPIDTESLCVLAGEKVWSVRVDVLVLNHSGNILDC
CCIAAIASLAHFR
Run BLAST on NCBI

transcript from alignment at sc0000267:123611..126577+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017414 ID=TCONS_00017414|Name=TCONS_00017414|organism=Clytia hemisphaerica|type=transcript|length=2967bp|location=Sequence derived from alignment at sc0000267:123611..126577+ (Clytia hemisphaerica)
tttagataacaaagaaaaatagaaaaataagaaaatcaacaaattaaTAT
GAAAGCATCCAGTGTAAGGTTTACAACTTGTGAGAAGCAGTTTGTTGGCA
AGTCAATTGAAAGTGGCATTGTAAGATCTTATTTTCTCTcagattgttta
atggtcacatATTTTTGCTTCAAATAAGTCTTATAGCATACCAGCTAGTT
GAGTTAAAAAAGTTTccgtaatttttaaatttcatgatACAAATTTTGAT
AACAATCCTGTACATTAGGCCAAAAAACCCAACATTTTCTCTTGACTCTA
TTGTACTTTTACTTTCAGAGATTGGATGGTCGACAAGCATATGATTACAG
AAATCTTGAAATCAACTTTGGATTAGATTATGGCTATTGTGAGGTCACAT
TAGGAGATACAAGGTCTGTCTAGAAACTACCATTATCAGGGTTACTTTCA
TGGTGGAGAAATGCTTTATTCAGAAAAGGTTTAAATACATGCTTTAGAAG
AAGAGGGAAGGGCAATGAATGTCCCTTACTCTAGCCCCTCAACCTATGTG
TGATTCTTGCACTGCAATTCTTTATAAGGTACACTAAGAATTTTGATCAT
CAAGATCATCTTTAAATGGGTAAGTAACCTGAGGTCTTACAATacgaaat
tgaaaattaaaacagagATGTCATTTCATTTTTACACGGCAGTGAAGTTT
AACATCTTGaagaattttattaaatttttacttGCTTTATTTAGAGCACT
TGCACAGACGTCTTGTGAGTTGATCAAACCATTAGATTCACGACCAACTG
ATGGCCAGCTCTTCATCAATGTTGACTTATCACCTATGGCTTCCTGTTCC
TTCGAAAGTGGAAGGTGGGacattatttattttcttcaaatggagtttaa
attcaaagttttagttcctaagaagaaaaaattgccaattgaacttttaa
ctttaaattttaGATATTGCACTTGATGAGTACTTTAAATTACTCTTTTC
TGTTTAGACTCCTAGTTCTTTTTACTAAGTTttcattttgtatattttta
ttttatttttgacagaatGACAAGTGAAGGGGTTGAGATTAACCGACTGA
TCGACCGAGTACTAAAAGAATCTAGACCAATTGATACTGAGTCTTTATGC
GTTCTTGCCGGAGAAAAGGTTTGTTTTCAACACAGAAATATTTGTGTGTT
ATGTGTATCATTTTTTTCGTACATTACaacaaaatgtaaattttttttta
gaatattgAATTTATGTAAACTTAAAATGTAGAAGCAGCAAATTAATAGA
ACagaaaaatgaagcgactgcttaNATTATCAGGGTTACTTTCATGGTGG
AGAAAtgctttttttcagaaaaggtTTAAATACATGCTTTAGAAGAAGAG
GGAAGGGCAATGAATGTCCCTTACTCTAGCCCCTCAACCTATGTGTGATT
CTTGCNtcaattttgttaattctgCTATGTCAGCATTAGAGGCTCGCCTC
CTTTCCATGTAGGCTTTATTATTAATCTTCTGGTCATTCTTTCAGGCGAC
CAGATGTTACGGTNcatctttcgtgacttcatcagcatatCATATCATAG
AATTTATGTAATATATATAAGTCTGATAACCTTTTTGTGAATATTCATTC
TAAATATTTGTTGTGATTTGTCNCATCAAGATCATCTTTAAATGGGTAAG
TAACCTGAGGTCTTACAATacgaaattgaaaattaaaacagagATGTCAT
TTCATTTTTACACGGCAGTGAAGTTTAACATCTTGAAGAATTTTATTAAA
NATTACCTTTCGGAAGGTATGATCCTTCCCTATTAAAATTGTAGTTTAAA
GAAGATATTTGGGAGATTTTAACCTGTCTGTAGTTTTAGAATATTGTAAT
GGGGTGCAATATATCCAGTGGTGTACTTAAACATTTACTCTTGAAGTAGT
ACTGAAAATAAATCTTGGGACattgaatttttctattttcagcaTTCGTT
GAAAGAAAAGGAGCCAGTACCTTTGAATGTTCATCATATGCCCATCTGTA
TTACTTTTGGATTTATCGAGGACGAAAAGAAAGGGTTTGTCACTTTTCGT
TCTAAATACTATGTCATGGGTTTCGCCTACAGAAATTATTTAGAAGTTTT
ATGAAGTTGCTTGTAAGAAGAATTTTTTAttaggaaattttttcaatttt
ctactGGGGGGTTTTCACTTAAGGGTCGAGCTTTCTTACTTGAGATTCAC
AACACTTGGGTCACCCCAAGGGTCATATGAACATATCAACCAAATTGAAT
CTCTGACATCCAGGGGAAACATACTgggcacccccccccctggattctgg
gggggggttgaggattttcagatttttaaaaataggtgggggttgggttg
atgagaaatttcaggtgggggtaaccctatgtagNAAAGGTTTGTTTTCA
ACACAGAAATATTTGTGTGTTATGTGTATCATTTTTTTCGTACATTACaa
caaaatgtaaatttttttttagaatattgAATTTATGTAAACTTAAAATG
TAGAAGCAGCAAATTAATAGAACagaaaaatgaagcgactgcttatGTAG
AAATTTGcgtcatctttcgtgacttcatcagcatatCATATCATAGAATT
TATGTAATATATATAAGTCTGATAACCTTTTTGTGAATATTCATTCTAAA
TATTTGTTGTGATTTGTCTTGtccttttgttttgtgggttttgttCTCTG
TGTTTCCATTGAATAGTTGAAGGTTtcatacttctagactatataaaaaa
ccttaaattatttttttttcaatattctacttttacttttaatattattt
cgaattcaaaattttaggtTTGGTCGGTTCGTGTTGATGTTTTGGTTTTG
AATCACAGTGGAAATATCTTGGATTGCTGTTGTATAGCTGCCATTGCATC
TCTGGCCCATTTCAGGT

Coding sequence (CDS) from alignment at sc0000267:123611..126577+

>TCONS_00017414 ID=TCONS_00017414|Name=TCONS_00017414|organism=Clytia hemisphaerica|type=CDS|length=2445bp|location=Sequence derived from alignment at sc0000267:123611..126577+ (Clytia hemisphaerica)
ATGAAAGCATCCAGTGTAAGGTTTACAACTTGTGAGAAGCAGTTTGTTGG
CAAGTCAATTGAAAGTGGCATTAGATTGGATGGTCGACAAGCATATGATT
ACAGAAATCTTGAAATCAACTTTGGATTAGATTATGGCTATTGTGAGGTC
ACATTAGGAGATACAAGAGCACTTGCACAGACGTCTTGTGAGTTGATCAA
ACCATTAGATTCACGACCAACTGATGGCCAGCTCTTCATCAATGTTGACT
TATCACCTATGGCTTCCTGTTCCTTCGAAAGTGGAAGaatGACAAGTGAA
GGGGTTGAGATTAACCGACTGATCGACCGAGTACTAAAAGAATCTAGACC
AATTGATACTGAGTCTTTATGCGTTCTTGCCGGAGAAAAGgtTTGGTCGG
TTCGTGTTGATGTTTTGGTTTTGAATCACAGTGGAAATATCTTGGATTGC
TGTTGTATAGCTGCCATTGCATCTCTGGCCCATTTCAGGATGAAAGCATC
CAGTGTAAGGTTTACAACTTGTGAGAAGCAGTTTGTTGGCAAGTCAATTG
AAAGTGGCATTAGATTGGATGGTCGACAAGCATATGATTACAGAAATCTT
GAAATCAACTTTGGATTAGATTATGGCTATTGTGAGGTCACATTAGGAGA
TACAAGAGCACTTGCACAGACGTCTTGTGAGTTGATCAAACCATTAGATT
CACGACCAACTGATGGCCAGCTCTTCATCAATGTTGACTTATCACCTATG
GCTTCCTGTTCCTTCGAAAGTGGAAGaatGACAAGTGAAGGGGTTGAGAT
TAACCGACTGATCGACCGAGTACTAAAAGAATCTAGACCAATTGATACTG
AGTCTTTATGCGTTCTTGCCGGAGAAAAGgtTTGGTCGGTTCGTGTTGAT
GTTTTGGTTTTGAATCACAGTGGAAATATCTTGGATTGCTGTTGTATAGC
TGCCATTGCATCTCTGGCCCATTTCAGGATGAAAGCATCCAGTGTAAGGT
TTACAACTTGTGAGAAGCAGTTTGTTGGCAAGTCAATTGAAAGTGGCATT
AGATTGGATGGTCGACAAGCATATGATTACAGAAATCTTGAAATCAACTT
TGGATTAGATTATGGCTATTGTGAGGTCACATTAGGAGATACAAGAGCAC
TTGCACAGACGTCTTGTGAGTTGATCAAACCATTAGATTCACGACCAACT
GATGGCCAGCTCTTCATCAATGTTGACTTATCACCTATGGCTTCCTGTTC
CTTCGAAAGTGGAAGaatGACAAGTGAAGGGGTTGAGATTAACCGACTGA
TCGACCGAGTACTAAAAGAATCTAGACCAATTGATACTGAGTCTTTATGC
GTTCTTGCCGGAGAAAAGgtTTGGTCGGTTCGTGTTGATGTTTTGGTTTT
GAATCACAGTGGAAATATCTTGGATTGCTGTTGTATAGCTGCCATTGCAT
CTCTGGCCCATTTCAGGATGAAAGCATCCAGTGTAAGGTTTACAACTTGT
GAGAAGCAGTTTGTTGGCAAGTCAATTGAAAGTGGCATTAGATTGGATGG
TCGACAAGCATATGATTACAGAAATCTTGAAATCAACTTTGGATTAGATT
ATGGCTATTGTGAGGTCACATTAGGAGATACAAGAGCACTTGCACAGACG
TCTTGTGAGTTGATCAAACCATTAGATTCACGACCAACTGATGGCCAGCT
CTTCATCAATGTTGACTTATCACCTATGGCTTCCTGTTCCTTCGAAAGTG
GAAGaatGACAAGTGAAGGGGTTGAGATTAACCGACTGATCGACCGAGTA
CTAAAAGAATCTAGACCAATTGATACTGAGTCTTTATGCGTTCTTGCCGG
AGAAAAGgtTTGGTCGGTTCGTGTTGATGTTTTGGTTTTGAATCACAGTG
GAAATATCTTGGATTGCTGTTGTATAGCTGCCATTGCATCTCTGGCCCAT
TTCAGGATGAAAGCATCCAGTGTAAGGTTTACAACTTGTGAGAAGCAGTT
TGTTGGCAAGTCAATTGAAAGTGGCATTAGATTGGATGGTCGACAAGCAT
ATGATTACAGAAATCTTGAAATCAACTTTGGATTAGATTATGGCTATTGT
GAGGTCACATTAGGAGATACAAGAGCACTTGCACAGACGTCTTGTGAGTT
GATCAAACCATTAGATTCACGACCAACTGATGGCCAGCTCTTCATCAATG
TTGACTTATCACCTATGGCTTCCTGTTCCTTCGAAAGTGGAAGaatGACA
AGTGAAGGGGTTGAGATTAACCGACTGATCGACCGAGTACTAAAAGAATC
TAGACCAATTGATACTGAGTCTTTATGCGTTCTTGCCGGAGAAAAGgtTT
GGTCGGTTCGTGTTGATGTTTTGGTTTTGAATCACAGTGGAAATATCTTG
GATTGCTGTTGTATAGCTGCCATTGCATCTCTGGCCCATTTCAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009753XLOC_009753Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017414-exon-sc0000267-1491911889:123611..123730TCONS_00017414-exon-sc0000267-1491911889:123611..123730Clytia hemisphaericaexon
TCONS_00017414-exon-sc0000267-1510915933:123611..123730TCONS_00017414-exon-sc0000267-1510915933:123611..123730Clytia hemisphaericaexon
TCONS_00017414-exon-sc0000267-1575043694:123611..123730TCONS_00017414-exon-sc0000267-1575043694:123611..123730Clytia hemisphaericaexon
TCONS_00017414-exon-sc0000267-1491911889:123929..124023TCONS_00017414-exon-sc0000267-1491911889:123929..124023Clytia hemisphaericaexon
TCONS_00017414-exon-sc0000267-1510915933:123929..124023TCONS_00017414-exon-sc0000267-1510915933:123929..124023Clytia hemisphaericaexon
TCONS_00017414-exon-sc0000267-1575043694:123929..124023TCONS_00017414-exon-sc0000267-1575043694:123929..124023Clytia hemisphaericaexon
TCONS_00017414-exon-sc0000267-1491911889:124355..124474TCONS_00017414-exon-sc0000267-1491911889:124355..124474Clytia hemisphaericaexon
TCONS_00017414-exon-sc0000267-1510915933:124355..124474TCONS_00017414-exon-sc0000267-1510915933:124355..124474Clytia hemisphaericaexon
TCONS_00017414-exon-sc0000267-1575043694:124355..124474TCONS_00017414-exon-sc0000267-1575043694:124355..124474Clytia hemisphaericaexon
TCONS_00017414-exon-sc0000267-1491911889:124676..124778TCONS_00017414-exon-sc0000267-1491911889:124676..124778Clytia hemisphaericaexon
TCONS_00017414-exon-sc0000267-1510915933:124676..124778TCONS_00017414-exon-sc0000267-1510915933:124676..124778Clytia hemisphaericaexon
TCONS_00017414-exon-sc0000267-1575043694:124676..124778TCONS_00017414-exon-sc0000267-1575043694:124676..124778Clytia hemisphaericaexon
TCONS_00017414-exon-sc0000267-1491911889:126478..126577TCONS_00017414-exon-sc0000267-1491911889:126478..126577Clytia hemisphaericaexon
TCONS_00017414-exon-sc0000267-1510915933:126478..126577TCONS_00017414-exon-sc0000267-1510915933:126478..126577Clytia hemisphaericaexon
TCONS_00017414-exon-sc0000267-1575043694:126478..126577TCONS_00017414-exon-sc0000267-1575043694:126478..126577Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017414-proteinTCONS_00017414-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000267supercontigsc0000267:123611..126577 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
81.5318	84.5226	92.6115	85.1476	32.7329	26.1784	26.3662	26.861	32.043	31.4085	29.1155	31.544	24.4543	28.0692	28.248	36.0919	31.2804	35.307	18.4007	17.8738	22.6575	21.2161	47.6451	42.0429	40.6739	35.6403	16.1227	13.3816	27.775	27.206
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001247ExoRNase_PH_dom1
IPR027408PNPase/RNase_PH_dom
IPR033100Rrp45
IPR020568Ribosomal_S5_D2-typ_fold
Vocabulary: Cellular Component
TermDefinition
GO:0000178exosome (RNase complex)
Vocabulary: Biological Process
TermDefinition
GO:0006396RNA processing
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006396 RNA processing
cellular_component GO:0000178 exosome (RNase complex)
Blast
[Close]
BLAST of TCONS_00017414 vs. Swiss-Prot (Human)
Match: EXOS9 (Exosome complex component RRP45 OS=Homo sapiens GN=EXOSC9 PE=1 SV=3)

HSP 1 Score: 171.014 bits (432), Expect = 1.578e-50
Identity = 88/156 (56.41%), Postives = 116/156 (74.36%), Query Frame = 1 
Query:   70 FTTCEKQFVGKSIESGIRLDGRQAYDYRNLEINFGLDYGYCEVTLGDTRALAQTSCELIKPLDSRPTDGQLFINVDLSPMASCSFESGRMTSEGVEINRLIDRVLKESRPIDTESLCVLAGEKVWSVRVDVLVLNHSGNILDCCCIAAIASLAHFR 537
             + CE++F+ ++IE   RLDGRQ YDYRN+ I+FG DYG C V LG TR L Q SCEL+ P  +R T+G LF N++LS MA+ +FE GR +   V++NRL++R L+ S+ IDTESLCV+AGEKVW +RVD+ +LNH GNI+D   IAAI +L HFR
Sbjct:    6 LSNCERRFLLRAIEEKKRLDGRQTYDYRNIRISFGTDYGCCIVELGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLMERCLRNSKCIDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFR 161
The following BLAST results are available for this feature:
BLAST of TCONS_00017414 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
EXOS91.578e-5056.41Exosome complex component RRP45 OS=Homo sapiens GN... [more]
back to top