TCONS_00017414-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00017414-protein
Unique NameTCONS_00017414-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length163

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00017414-protein ID=TCONS_00017414-protein|Name=TCONS_00017414-protein|organism=Clytia hemisphaerica|type=polypeptide|length=163bp
MKASSVRFTTCEKQFVGKSIESGIRLDGRQAYDYRNLEINFGLDYGYCEV
TLGDTRALAQTSCELIKPLDSRPTDGQLFINVDLSPMASCSFESGRMTSE
GVEINRLIDRVLKESRPIDTESLCVLAGEKVWSVRVDVLVLNHSGNILDC
CCIAAIASLAHFR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_009753XLOC_009753Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00017414TCONS_00017414Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001247ExoRNase_PH_dom1
IPR027408PNPase/RNase_PH_dom
IPR033100Rrp45
IPR020568Ribosomal_S5_D2-typ_fold
Vocabulary: Cellular Component
TermDefinition
GO:0000178exosome (RNase complex)
Vocabulary: Biological Process
TermDefinition
GO:0006396RNA processing
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006396 RNA processing
cellular_component GO:0000178 exosome (RNase complex)
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001247Exoribonuclease, phosphorolytic domain 1PFAMPF01138RNase_PHcoord: 34..162
e-value: 7.6E-20
score: 71.7
IPR027408PNPase/RNase PH domainGENE3D3.30.230.70coord: 5..163
e-value: 2.7E-43
score: 147.8
IPR033100Exosome complex component RRP45CDDcd11368RNase_PH_RRP45coord: 9..163
e-value: 3.65781E-93
score: 272.864
IPR020568Ribosomal protein S5 domain 2-type foldSUPERFAMILY54211Ribosomal protein S5 domain 2-likecoord: 6..163

Blast
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BLAST of TCONS_00017414-protein vs. Swiss-Prot (Human)
Match: EXOS9 (Exosome complex component RRP45 OS=Homo sapiens GN=EXOSC9 PE=1 SV=3)

HSP 1 Score: 171.014 bits (432), Expect = 4.634e-52
Identity = 88/156 (56.41%), Postives = 116/156 (74.36%), Query Frame = 0 
Query:    8 FTTCEKQFVGKSIESGIRLDGRQAYDYRNLEINFGLDYGYCEVTLGDTRALAQTSCELIKPLDSRPTDGQLFINVDLSPMASCSFESGRMTSEGVEINRLIDRVLKESRPIDTESLCVLAGEKVWSVRVDVLVLNHSGNILDCCCIAAIASLAHFR 163
             + CE++F+ ++IE   RLDGRQ YDYRN+ I+FG DYG C V LG TR L Q SCEL+ P  +R T+G LF N++LS MA+ +FE GR +   V++NRL++R L+ S+ IDTESLCV+AGEKVW +RVD+ +LNH GNI+D   IAAI +L HFR
Sbjct:    6 LSNCERRFLLRAIEEKKRLDGRQTYDYRNIRISFGTDYGCCIVELGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLMERCLRNSKCIDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFR 161
The following BLAST results are available for this feature:
BLAST of TCONS_00017414-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
EXOS94.634e-5256.41Exosome complex component RRP45 OS=Homo sapiens GN... [more]
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