TCONS_00017412 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017412
Unique NameTCONS_00017412
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1909

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017412 ID=TCONS_00017412|Name=TCONS_00017412|organism=Clytia hemisphaerica|type=transcript|length=1909bp
GGGCAAAATAAACTGGAAACCTAGCACCCTTGCAAATTTGCAAACGACAA
AATTTCTAACTAATTTGGTTCTTTAGAAATGCCACTCTTTTAAAAAGCTA
TGGGTGATGAGGcgaaattaaagaaattaaaacaaGCTTACTTAGACGAC
TTACATTCACATGCTGGGAAATTGTGtctatctcataaaaagaaGTTTGC
AAAATGCATGTCTGAGTCTGTATTCAACTTTTGTGGTGTTCACTTGAGAG
AATTTACAGTCTGTGCGAGGAAGACTTTTGAAGAGctcaaagaagaaaat
aaagaaattcttGAGTTCAAAATAGATCCCTCTGAAGAAGTGAAAAAGGA
CTAAGTTTGCCCATCATCAAAGCAAAATGCTACGATTTAATCACATCAGA
TGTTTGAAGCAATCCGTACAAATCAGTGGTTGGTATGCTGCTGTGAGAGC
CTCAACTCAGTGTGTAACAGATGCTGAAAAGATGATCCAAAAGGTCTTGG
AAACCAATTCCAATCatccagaatggaaaaatattaCCAAAGATCGAAAA
CTTTTACCAATGATTGCAAACAATCTTTCGAGTATGGGAAGGTTTGAAGA
ATTAGACCAGCTGTTTGATAAAGTTGGTATTGATAGTTGCTCCCTTGGTA
TGCAAACCACATTGCTGAGGTCTTACATAGAGAGGCAGAATTGGGAAAGT
GCCTTTGGCTTATTAAAAAATTTAGAGGGTAAATTGAAGCATACAAGGAT
TCATCATGAATTAGTTCAAAACCTTTGCATATACAGTGATGTTCAAAAGG
TGTTCCATCATTTTGGAATGCTTGTTGATAAAGAATCTTGTTTCAAATTT
AAGCGAAGTCAAAACACTGCCCAAGAGACTTTTCAAGCAATTTTACAATT
CCTTATGGAAAATGAACATGCCATCTCTGAAAAAATGTTGACAAGTTTGA
TCCAGTTTATGCATATTGCTGATATTTCTGTTGACTTGATAGCTCTGGAG
AATTTACACAAGTTATTTTTATCTTTGGAATATGAATGTAAGCTATCCAA
AATTGAGGAGCTGGAATTGTTAGACGAGATAAAAGAAAGTCATAGCAAAG
ATGAGAAATCTTTTGTAACAGAATTGAAAGTAGgtatagaaaaaaaactt
attgaaaatgGAGGGCATTCATTTCTCGAGAATTTAAAAGTAATGAAAAA
AGAAGCTTACATTATCGATGTTGCTAATGTTTTATACTACCAATCTGAAA
AACAAAGCGGACCTAATATTTTGAGATTAAAGAACATTGTCAGTAGTCTT
GTATCTCTAAATCAACACAAAAAACGCTCAAAAAGTGTGATATTTGTGGT
GCCAAGAGGTGGATCTGGAAGAAAACTTCATCTTGTAAATTATTTGCATC
ATCTGAAACAAGAATTTATAATGACTTGTAGTATAGATTTAATTTCAAAC
CAAAAGGTTGACGATGATTTACTGATCATGTACTTAGCTCTTCAAAGCCC
AAACAAATCTGTTGTCATTTCTAATGATAACTTTACAGAACACTTAGCAC
TTATATCGGAATCAAAACGATCAGACATGATTACTTGGTTGAGATCAACA
GTGAAGGACTTTTCTGGAAATGGAACAATCCAATTATCAAACTACATACC
AAGTGTTATGGTTAATAACGGTAGATTATGTATTATTAGTGATAATAATG
TTTTGTATATAAAAAAGTCATAGGTGATTTTAATAGTTTTATAAGATTCT
AGTGATAAACCATTTTACACAACAATATTTTAGAACACAGAGTAGACCTG
TTTCATCTTTTcatcttgaaattgaaaaattgaataaagcATCCATGAGA
ATAGATGCAACAAACTGTCTTTTCTGGTTTTATTCTcgatatttcaaatt
taaattcta
Run BLAST on NCBI

transcript from alignment at sc0000267:119104..123261+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017412 ID=TCONS_00017412|Name=TCONS_00017412|organism=Clytia hemisphaerica|type=transcript|length=4158bp|location=Sequence derived from alignment at sc0000267:119104..123261+ (Clytia hemisphaerica)
GGGCAAAATAAACTGGAAACCTAGCACCCTTGCAAATTTGCAAACGACAA
AATTTCTAACTAATTTGGTTCTTTAGAAATGCCACTCTTTTAAAAAGGTG
TGATGCTCATTAAAGGGAAGGGCTCCTTTGAAGATCAGTgatcaaagttc
ttccgtctcagacggatttccgtctcacagaatttttttcaaagttttcg
gTCTCAATTATTtagcaagaaaaagtgatttTATTCTCTAGAGTAATTCC
ATCAGAAAGAAATCTCGTATTAAAACTATGTTTATGGCTGTTNAAAGCAG
GgatttgatgcaagagttagatgACAACAAAGTGCTGtatataaaaaatc
attgaataaaagaagaactttattaaatcttaaatattttcattttgaag
aattggtgcaaaaaagtgaaacatggaaaaatttctttttttaacggTTC
AATAgaaataggggatttggaaaactttctatatttgtttttttgcacaa
accctgTAACTATGGGAGAGCATCccattgctaagatgttggctcgAAAT
TGTAAGTCaaaccactgaaaatgaaagtaaaatcggccgtACTCCACTCC
CGTAATCTTGTTATAGGAGTTTAAGCATAGACTgaccgtgaagtcaggta
acatgcctcagtggagggaaacttgcatcagtggagggaaacttgcatgg
TTACCCGACTTAGCGGTAGGCATAATTCAATTCCAAATTGataataaatt
ttgagatttcacGTCTGAAAACCATCCAGCAGTTTAGCTTGATCTCCCCA
ATCTCTAGATTTTAAGTTAGCAAAATGAAGAAAGATTTAGTTTCCTCAGA
tattattttgagattttgagatATTTAAATTAGCGCTATTAAAATGCTTG
AAATGAATAAgtaaataatattcaatatactatttgtatctttCAGAAAA
TAAGTTACACTTAAAAAATGAGATATCTTGTCATTGTCACACCCCTCTAC
CATATTTAGATCATTCTATTGTGTGGGGCAAAATAAACTGGAAACCTAGC
ACCCTTGCAAATTTGCAAACGACAAAATTTCTAACTAATTTGGTTCTTTA
GAAATGCCACTCTTTTAAAAAGGTGTGATGCTCATTAAAGGGAAGGGCTC
CTTTGAAGATCTGTgatcaaagttcttccgtctcagacggatttccgtct
cacagaatttttttcaaagttttcggTCTCAATTATTtagcaagaaaaag
tgatttTATTCTCTAGAGTAATTCCATCAGAAAGAAATCTCGTATTAAAA
CTATGTTTATGGCTGTTTATGGCTGATTTTATATTTTGAGTTGttttaat
taacaaattttTGTGCCTTTCTACTCAATCTTGTAAGTCATAATACATTT
TTAAGACAATTAGCATTGAATTCTAAAAGTTATAGTCTTGGATGGCTTCT
GGCTGAATTTCCATTAATATTTATACCTTTCATTATAGCTATGGGTGATG
AGGcgaaattaaagaaattaaaacaaGCTTACTTAGACGACTTACATTCA
CATGCTGGGAAATTGTGtctatctcataaaaagaaGTTTGCAAAATGCAT
GTCTGAGTCTGTATTCAACTTTTGTGGTGTTCACTTGAGAGAATTTACAG
TCTGTGCGAGGAAGACTTTTGAAGAGctcaaagaagaaaataaagaaatt
cttGAGTTCAAAATAGATCCCTCTGAAGAAGTGAAAAAGGTACAGTTTTC
TACACTTTATAATATTTTGAACTTTAAGTGACTAATCTTTTAATTCATTA
ATTAATGCATGGCTCCGActgggttctaggtccccccgccaaatttaggt
ctcccctgagaacaaggtcccccctgagaacaaggtccccccagcctgat
aaaattttaggtcccagtataggggaaaaattttatggcattcacaaagc
tctatCTACATGGGTgtgcacttttagagaatgcaagctcggtcgttact
tgacctcgggcaatatgtcttcattttttcattttaaggatcagatcacc
ctttgcatgaaaacataaaggtttagagaaattaaaaaccaacattaaag
aaaaatatttaggaagtgtTATTTAGCCCCCAGAGTTACATAAACTAATG
CAGGTCCCCCCAAGATAGAGCTCCCCCCGTCTGTCGGGAAAAACAAGCAG
CTCCCGCCTCTTATATGGCAAATTTTAGGTGTAGGTCCCCCCGCTCAGGC
AGGGGGGGGGGCGAGCCATGTAATGTAGATAAGAAGTCTCCTTTTAGATG
ACAATGATGGGGGCAGACAATTGATAAGTCTTTCTGGGTTTTCTAGGACT
AAGTTTGCCCATCATCAAAGCAAAATGCTACGATTTAATCACATCAGATG
TTTGAAGCAATCCGTACAAATCAGTGGTTGGTATGCTGCTGTGAGAGCCT
CAACTCAGTGTGTAACAGATGCTGAAAAGATGATCCAAAAGGTCTTGGAA
ACCAATTCCAATCatccagaatggaaaaatattaCCAAAGATCGAAAACT
TTTACCAATGATTGCAAACAATCTTTCGAGTATGGGAAGGTTTGAAGAAT
TAGACCAGCTGTTTGATAAAGTTGGTATTGATAGTTGCTCCCTTGGTATG
CAAACCACATTGCTGAGGTCTTACATAGAGAGGCAGAATTGGGAAAGTGC
CTTTGGCTTATTAAAAGTAAGTATAATAAGATATTTTGTAAAgcaaattt
aaaactttccaaATAAAAAGGTGAACCCTACTTCAGGTAGAGACTTTTAT
ATATAAACATTTGATTCTGCCCTGTGCTTTCCTTTATCGACCTGTCATTA
CTGCGGTATTGGTATTTGCGGCGttagcttttttaggcttatgcaaataa
aggatagaaatagaaatagaaaggtAAAAAACTTATCTATGATACTAACG
TTCAACTTTTCTTATAGAATTTAGAGGGTAAATTGAAGCATACAAGGATT
CATCATGAATTAGTTCAAAACCTTTGCATATACAGTGATGTTCAAAAGGT
GTTCCATCATTTTGGAATGCTTGTTGATAAAGAATCTTGTTTCAAATTTA
AGCGAAGTCAAAACACTGCCCAAGAGACTTTTCAAGCAATTTTACAATTC
CTTATGGAAAATGAACATGCCATCTCTGAAAAAATGTTGACAAGTTTGAT
CCAGTTTATGCATATTGCTGATATTTCTGTTGACTTGATAGCTCTGGAGA
ATTTACACAAGTTATTTTTATCTTTGGAATATGAATGTAAGCTATCCAAA
ATTGAGGAGCTGGAATTGTTAGACGAGATAAAAGAAAGTCATAGCAAAGA
TGAGAAATCTTTTGTAACAGAATTGAAAGTAGgtatagaaaaaaaactta
ttgaaaatgGAGGGCATTCATTTCTCGAGAATTTAAAAGTAATGAAAAAA
GAAGCTTACATTATCGATGTTGCTAATGTTTTATACTACCAATCTGAAAA
ACAAAGCGGACCTAATATTTTGAGATTAAAGAACATTGTCAGTAGTCTTG
TATCTCTAAATCAACACAAAAAACGCTCAAAAAGTGTGATATTTGTGGTG
CCAAGAGGTGGATCTGGAAGAAAACTTCATCTTGTAAATTATTTGCATCA
TCTGAAACAAGAATTTATAATGACTTGTAGTATAGATTTAATTTCAAACC
AAAAGGTTGACGATGATTTACTGATCATGTACTTAGCTCTTCAAAGCCCA
AACAAATCTGTTGTCATTTCTAATGATAACTTTACAGAACACTTAGCACT
TATATCGGAATCAAAACGATCAGACATGATTACTTGGTTGAGATCAACAG
TGAAGGACTTTTCTGGAAATGGAACAATCCAATTATCAAACTACATACCA
AGTGTTATGGTTAATAACGGTAGATTATGTATTATTAGTGATAATAATGT
TTTGTATATAAAAAAGTCATAGGTGATTTTAATAGTTTTATAAGATTCTA
GTGATAAACCATTTTACACAACAATATTTTAGAACACAGAGTAGACCTGT
TTCATCTTTTcatcttgaaattgaaaaattgaataaagcATCCATGAGAA
TAGATGCAACAAACTGTCTTTTCTGGTTTTATTCTcgatatttcaaattt
aaattcta
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009752XLOC_009752Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017412-exon-sc0000267-1491911889:119104..119200TCONS_00017412-exon-sc0000267-1491911889:119104..119200Clytia hemisphaericaexon
TCONS_00017412-exon-sc0000267-1510915933:119104..119200TCONS_00017412-exon-sc0000267-1510915933:119104..119200Clytia hemisphaericaexon
TCONS_00017412-exon-sc0000267-1575043694:119104..119200TCONS_00017412-exon-sc0000267-1575043694:119104..119200Clytia hemisphaericaexon
TCONS_00017412-exon-sc0000267-1491911889:120592..120842TCONS_00017412-exon-sc0000267-1491911889:120592..120842Clytia hemisphaericaexon
TCONS_00017412-exon-sc0000267-1510915933:120592..120842TCONS_00017412-exon-sc0000267-1510915933:120592..120842Clytia hemisphaericaexon
TCONS_00017412-exon-sc0000267-1575043694:120592..120842TCONS_00017412-exon-sc0000267-1575043694:120592..120842Clytia hemisphaericaexon
TCONS_00017412-exon-sc0000267-1491911889:121450..121819TCONS_00017412-exon-sc0000267-1491911889:121450..121819Clytia hemisphaericaexon
TCONS_00017412-exon-sc0000267-1510915933:121450..121819TCONS_00017412-exon-sc0000267-1510915933:121450..121819Clytia hemisphaericaexon
TCONS_00017412-exon-sc0000267-1575043694:121450..121819TCONS_00017412-exon-sc0000267-1575043694:121450..121819Clytia hemisphaericaexon
TCONS_00017412-exon-sc0000267-1491911889:122071..123261TCONS_00017412-exon-sc0000267-1491911889:122071..123261Clytia hemisphaericaexon
TCONS_00017412-exon-sc0000267-1510915933:122071..123261TCONS_00017412-exon-sc0000267-1510915933:122071..123261Clytia hemisphaericaexon
TCONS_00017412-exon-sc0000267-1575043694:122071..123261TCONS_00017412-exon-sc0000267-1575043694:122071..123261Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000267supercontigsc0000267:119104..123261 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.85448	8.85959	5.62964	1.69359	2.93777	1.98983	1.60043	2.99661	0.913924	1.94903	2.83766	0.207263	0.41395	1.047	1.41371	1.70677	1.40174	1.67619	0	0.692361	3.97571	1.32089	9.99111	6.23155	1.67065	2.68383	2.77795	1.82166	3.90652	3.87118
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017412 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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