TCONS_00017350 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017350
Unique NameTCONS_00017350
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length735

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017350 ID=TCONS_00017350|Name=TCONS_00017350|organism=Clytia hemisphaerica|type=transcript|length=735bp
ATTGGGAATAGTCACTTGGATTGTTATGTACTTCAATTTTGGAAGGGTAC
AACATTATGTATTAAATTTGGAAGAGACTTGGATTGTTACGTACTTCTAT
TTTGGAATTGTTACTGGTAATCTTGAATCAATAATCATATTGTCGTCACC
TTCAgtcttatttaaaaagaaacgaATGGCTTTGAACTTTTTCATCGAAA
CATCCAACATTCGATACTGTTTTACACACTAGTAATTCAGTAATTATATC
GTTATCGTTTCATGCGACCTTACCATGGGCTGTATTTGTTCATTGCAAGC
ATTGTCATCGTTATTCGATTATATTCATCCATTTTCGTTATGGATTTGAG
ACGTACTTTTACAACACATTAAAATATCAATTTGTATCGATTGCGATTTT
AACGACATCTAAGAATCCGCTGTGACTGCTTCCACGTACATTTCCCAGCT
CAAAAATGTGGTTTGGTTATATGACTTTTATGGAAAcgaaaatacttgaa
aatagtTTTTATTATCTTGAAAGCCGGAAATTTGCCGGATatgaaaaaag
ccaaatttgcaCACATTAGTTGTAGTTTTGTACATTataatcattttttt
tgaaatagttATCGAAATTTTGGAATTACAAATTACGTATGTTTGgaaat
atcatttttaatttcacaATACTGTATAAAGACTCGagtttctgattttt
ccaataTACCTAATAATACGTTTACTGATTTTCGG
Run BLAST on NCBI

transcript from alignment at sc0000266:19141..20200+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017350 ID=TCONS_00017350|Name=TCONS_00017350|organism=Clytia hemisphaerica|type=transcript|length=1060bp|location=Sequence derived from alignment at sc0000266:19141..20200+ (Clytia hemisphaerica)
ATTGGGAATAGTCACTTGGATTGTTATGTACTTCTATTTTGGAACAGTAC
AACATTATGTATTAAATTGGGAATAGTCACTTGGATTGTTATGTACTTCT
ATTTTGGAACGGTACAACATTATATATTAAATTGGGAAAAGTCACTTGGA
TTGTTATGTACTTCAATTTTGGAAGGGTACAACATTATGTATTAAATTGG
GAGAAGTCACTTGGATTGTTATGTACTTCTATTTTGGAACAGTACAACAT
TATGTATTAAATTGGGAAAAGTCACTTGGATTGTTATGTACTTCTATTTT
GGAACGGTACAACATAATGTATTAAATTGGGAATAGTCACTTGGATTGTT
ATGTACTTCTATTTTGGAATTATACAACATTATGTATTAAATTTGGAAGA
GACTTGGATTGTTACGTACTTCTATTTTGGAATTGTTACTGGTAATCTTG
AATCAATAATCATATTGTCGTCACCTTCAgtcttatttaaaaagaaacga
ATGGCTTTGAACTTTTTCATCGAAACATCCAACATTCGATACTGTTTTAC
ACACTAGTAATTCAGTAATTATATCGTTATCGTTTCATGCGACCTTACCA
TGGGCTGTATTTGTTCATTGCAAGCATTGTCATCGTTATTCGATTATATT
CATCCATTTTCGTTATGGATTTGAGACGTACTTTTACAACACATTAAAAT
ATCAATTTGTATCGATTGCGATTTTAACGACATCTAAGAATCCGCTGTGA
CTGCTTCCACGTACATTTCCCAGCTCAAAAATGTGGTTTGGTTATATGAC
TTTTATGGAAAcgaaaatacttgaaaatagtTTTTATTATCTTGAAAGCC
GGAAATTTGCCGGATatgaaaaaagccaaatttgcaCACATTAGTTGTAG
TTTTGTACATTataatcattttttttgaaatagttATCGAAATTTTGGAA
TTACAAATTACGTATGTTTGgaaatatcatttttaatttcacaATACTGT
ATAAAGACTCGagtttctgatttttccaataTACCTAATAATACGTTTAC
TGATTTTCGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009713XLOC_009713Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017350-exon-sc0000266-1491911889:19141..19167TCONS_00017350-exon-sc0000266-1491911889:19141..19167Clytia hemisphaericaexon
TCONS_00017350-exon-sc0000266-1510915933:19141..19167TCONS_00017350-exon-sc0000266-1510915933:19141..19167Clytia hemisphaericaexon
TCONS_00017350-exon-sc0000266-1575043694:19141..19167TCONS_00017350-exon-sc0000266-1575043694:19141..19167Clytia hemisphaericaexon
TCONS_00017350-exon-sc0000266-1491911889:19298..19323TCONS_00017350-exon-sc0000266-1491911889:19298..19323Clytia hemisphaericaexon
TCONS_00017350-exon-sc0000266-1510915933:19298..19323TCONS_00017350-exon-sc0000266-1510915933:19298..19323Clytia hemisphaericaexon
TCONS_00017350-exon-sc0000266-1575043694:19298..19323TCONS_00017350-exon-sc0000266-1575043694:19298..19323Clytia hemisphaericaexon
TCONS_00017350-exon-sc0000266-1491911889:19519..20200TCONS_00017350-exon-sc0000266-1491911889:19519..20200Clytia hemisphaericaexon
TCONS_00017350-exon-sc0000266-1510915933:19519..20200TCONS_00017350-exon-sc0000266-1510915933:19519..20200Clytia hemisphaericaexon
TCONS_00017350-exon-sc0000266-1575043694:19519..20200TCONS_00017350-exon-sc0000266-1575043694:19519..20200Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000266supercontigsc0000266:19141..20200 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.96089	7.42536	7.75839	5.85942	16.608	8.9844	11.2208	10.295	8.17276	2.64736	11.9119	5.03741	5.41335	7.08814	6.61305	8.50451	6.90413	5.11728	8.57376	4.32813	25.0149	23.5869	15.1864	13.6961	1.02439	17.9079	10.607	12.6706	7.60247	7.00216
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017350 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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