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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017336 ID=TCONS_00017336|Name=TCONS_00017336|organism=Clytia hemisphaerica|type=transcript|length=1580bp
CTTTGTTCAAATGTGAttcatcacgcaagaaaaaatcaagagggAGAGCA
ACTGGAGGAGTCTGCTTCTACATGAGATGATATAGCTGCTTCATGTGAAA
TAATCTATTCCCATAAATCACCAAGTGTACaactcctttgtgtttactcA
AAGACTGAAAACTATGCTTGTAATATATAGACAGCCTGATGACAAGAGTA
ATGGAAATCCATCAACAGCTAAAGACCTTCTTACACCGCTCAAATGTGCG
AAACAAGCCCTTTCCGCCTTGGAACCTGTCCCAAACATAATTTTTGGTGG
CGATTTCAATCTTCCAAAGTCAACATGGCCTGATGGACTACCCAAAACTG
GATGCTCTATGGAAGAAAGATCAATGCTGAATGATCTAAATCGATTTTGC
AACGAGTTGTTCATGTCCCAACATGTCAATCAACCCACACACAAAGATGG
GAACACCGTAGACCTTGTCAAATAATGAAGATCTTATACATGACTACTCA
ATTTTACCAGTGTTACAAAGCACTTCACATCACAGTATTGTTATGGTATC
AACTAGGctcaaagttcaaaattttgctagtgatgatgataaaccagaaC
CACGTTCCAAATTCAACGctttgaatttcttctcaaATGAAATTGAGTGG
AATAAGTTAAAAGAAGATTTGAATCAAATTGACTGGGATGTAAAACTTAA
CAGTGATGATCCACAAGAAATTCTTGAAAGTATCAATCAAATATGTTTGG
ACGTATGCAGAGGACGAATACCAGTCAGAACAACCAAAGATACAAGGaag
aaatcaaaagttgaaagaTATCGCCGCTCTCTtacgaaaaaaagaagaaa
aattacaaagcaaTTTTTAAAATGCACATCCCAATCAAAGAAGACTAAAA
TAACAAAGGAACTTTTGACAATTGAAAAGGACTTACAAAAATCATTTAGG
GATTCCAAGTGTTATGTTGAAAATATAGCAATCAATTCCataaagaaaaa
ctcaaaatatttctttgcttatgcaagaaagaaagcaaagatgaaaaaga
aaattggcCCTCTGCTGAACACAAATGGTGAATTAACGCAACGAAGCAAA
GAAATGGCTGAAATTCTGTCAAGACAATATGTTTCCGTCTTCAGTGCACC
AAAACCATTCGATATAATGCAGAGTGAAAATAATGAACTCAACGTAGATA
TCATTTCAGATCTACAAGTTACAGAAGATGATTTAATAAAAGCAATCAAC
AATCTGTCCCAAACTGCACCAGGTCCCGATGGTTTCCCTGCAATTTTTCT
CAAACAATGCAAAGAAGAACTATCTATTCCTCTTTGTATCCTCTGGAGAC
AAAGTTTGGACAAAGGTATTGTCCCAGACGAACTTAAAAGATGCACAATC
ACACCAATCTACAAAGGAGGTAGCAGATCACTGGCATCAAATTATAGACC
AGTAGCCCTAACATCCCATGTCATCAAGATATTTGAAAAGGTACTCACAG
CACATATTGTAAAGCACATGGATGAAAATAATCTGTTCAATCCCAATCAA
CATGGATTCAGAAGCGGGCGTTCATGTTTG Run BLAST on NCBI protein sequence of TCONS_00017336-protein >TCONS_00017336-protein ID=TCONS_00017336-protein|Name=TCONS_00017336-protein|organism=Clytia hemisphaerica|type=polypeptide|length=346bp
MVSTRLKVQNFASDDDKPEPRSKFNALNFFSNEIEWNKLKEDLNQIDWDV
KLNSDDPQEILESINQICLDVCRGRIPVRTTKDTRKKSKVERYRRSLTKK
RRKITKQFLKCTSQSKKTKITKELLTIEKDLQKSFRDSKCYVENIAINSI
KKNSKYFFAYARKKAKMKKKIGPLLNTNGELTQRSKEMAEILSRQYVSVF
SAPKPFDIMQSENNELNVDIISDLQVTEDDLIKAINNLSQTAPGPDGFPA
IFLKQCKEELSIPLCILWRQSLDKGIVPDELKRCTITPIYKGGSRSLASN
YRPVALTSHVIKIFEKVLTAHIVKHMDENNLFNPNQHGFRSGRSCL Run BLAST on NCBI transcript from alignment at sc0000264:287903..289482 Legend: exonCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017336 ID=TCONS_00017336|Name=TCONS_00017336|organism=Clytia hemisphaerica|type=transcript|length=1580bp|location=Sequence derived from alignment at sc0000264:287903..289482 (Clytia hemisphaerica)
CAAACATGAACGCCCGCTTCTGAATCCATGTTGATTGGGATTGAACAGAT
TATTTTCATCCATGTGCTTTACAATATGTGCTGTGAGTACCTTTTCAAAT
ATCTTGATGACATGGGATGTTAGGGCTACTGGTCTATAATTTGATGCCAG
TGATCTGCTACCTCCTTTGTAGATTGGTGTGATTGTGCATCTTTTAAGTT
CGTCTGGGACAATACCTTTGTCCAAACTTTGTCTCCAGAGGATACAAAGA
GGAATAGATAGTTCTTCTTTGCATTGTTTGAGAAAAATTGCAGGGAAACC
ATCGGGACCTGGTGCAGTTTGGGACAGATTGTTGATTGCTTTTATTAAAT
CATCTTCTGTAACTTGTAGATCTGAAATGATATCTACGTTGAGTTCATTA
TTTTCACTCTGCATTATATCGAATGGTTTTGGTGCACTGAAGACGGAAAC
ATATTGTCTTGACAGAATTTCAGCCATTTCTTTGCTTCGTTGCGTTAATT
CACCATTTGTGTTCAGCAGAGGgccaattttctttttcatctttgctttc
tttcttgcataagcaaagaaatattttgagtttttctttatGGAATTGAT
TGCTATATTTTCAACATAACACTTGGAATCCCTAAATGATTTTTGTAAGT
CCTTTTCAATTGTCAAAAGTTCCTTTGTTATTTTAGTCTTCTTTGATTGG
GATGTGCATTTTAAAAAttgctttgtaatttttcttctttttttcgtaAG
AGAGCGGCGATAtctttcaacttttgatttcttCCTTGTATCTTTGGTTG
TTCTGACTGGTATTCGTCCTCTGCATACGTCCAAACATATTTGATTGATA
CTTTCAAGAATTTCTTGTGGATCATCACTGTTAAGTTTTACATCCCAGTC
AATTTGATTCAAATCTTCTTTTAACTTATTCCACTCAATTTCATttgaga
agaaattcaaagCGTTGAATTTGGAACGTGGttctggtttatcatcatca
ctagcaaaattttgaactttgagCCTAGTTGATACCATAACAATACTGTG
ATGTGAAGTGCTTTGTAACACTGGTAAAATTGAGTAGTCATGTATAAGAT
CTTCATTATTTGACAAGGTCTACGGTGTTCCCATCTTTGTGTGTGGGTTG
ATTGACATGTTGGGACATGAACAACTCGTTGCAAAATCGATTTAGATCAT
TCAGCATTGATCTTTCTTCCATAGAGCATCCAGTTTTGGGTAGTCCATCA
GGCCATGTTGACTTTGGAAGATTGAAATCGCCACCAAAAATTATGTTTGG
GACAGGTTCCAAGGCGGAAAGGGCTTGTTTCGCACATTTGAGCGGTGTAA
GAAGGTCTTTAGCTGTTGATGGATTTCCATTACTCTTGTCATCAGGCTGT
CTATATATTACAAGCATAGTTTTCAGTCTTTgagtaaacacaaaggagtt
GTACACTTGGTGATTTATGGGAATAGATTATTTCACATGAAGCAGCTATA
TCATCTCATGTAGAAGCAGACTCCTCCAGTTGCTCTccctcttgattttt
tcttgcgtgatgaaTCACATTTGAACAAAG Coding sequence (CDS) from alignment at sc0000264:287903..289482 >TCONS_00017336 ID=TCONS_00017336|Name=TCONS_00017336|organism=Clytia hemisphaerica|type=CDS|length=1038bp|location=Sequence derived from alignment at sc0000264:287903..289482 (Clytia hemisphaerica)
CAAACATGAACGCCCGCTTCTGAATCCATGTTGATTGGGATTGAACAGAT
TATTTTCATCCATGTGCTTTACAATATGTGCTGTGAGTACCTTTTCAAAT
ATCTTGATGACATGGGATGTTAGGGCTACTGGTCTATAATTTGATGCCAG
TGATCTGCTACCTCCTTTGTAGATTGGTGTGATTGTGCATCTTTTAAGTT
CGTCTGGGACAATACCTTTGTCCAAACTTTGTCTCCAGAGGATACAAAGA
GGAATAGATAGTTCTTCTTTGCATTGTTTGAGAAAAATTGCAGGGAAACC
ATCGGGACCTGGTGCAGTTTGGGACAGATTGTTGATTGCTTTTATTAAAT
CATCTTCTGTAACTTGTAGATCTGAAATGATATCTACGTTGAGTTCATTA
TTTTCACTCTGCATTATATCGAATGGTTTTGGTGCACTGAAGACGGAAAC
ATATTGTCTTGACAGAATTTCAGCCATTTCTTTGCTTCGTTGCGTTAATT
CACCATTTGTGTTCAGCAGAGGgccaattttctttttcatctttgctttc
tttcttgcataagcaaagaaatattttgagtttttctttatGGAATTGAT
TGCTATATTTTCAACATAACACTTGGAATCCCTAAATGATTTTTGTAAGT
CCTTTTCAATTGTCAAAAGTTCCTTTGTTATTTTAGTCTTCTTTGATTGG
GATGTGCATTTTAAAAAttgctttgtaatttttcttctttttttcgtaAG
AGAGCGGCGATAtctttcaacttttgatttcttCCTTGTATCTTTGGTTG
TTCTGACTGGTATTCGTCCTCTGCATACGTCCAAACATATTTGATTGATA
CTTTCAAGAATTTCTTGTGGATCATCACTGTTAAGTTTTACATCCCAGTC
AATTTGATTCAAATCTTCTTTTAACTTATTCCACTCAATTTCATttgaga
agaaattcaaagCGTTGAATTTGGAACGTGGttctggtttatcatcatca
ctagcaaaattttgaactttgagCCTAGTTGATACCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017336-exon-sc0000264-1491911889:287903..289482 | TCONS_00017336-exon-sc0000264-1491911889:287903..289482 | Clytia hemisphaerica | exon |
| TCONS_00017336-exon-sc0000264-1510915933:287903..289482 | TCONS_00017336-exon-sc0000264-1510915933:287903..289482 | Clytia hemisphaerica | exon |
| TCONS_00017336-exon-sc0000264-1575043694:287903..289482 | TCONS_00017336-exon-sc0000264-1575043694:287903..289482 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000264 | supercontig | sc0000264:287903..289482 . |
Blast
The following BLAST results are available for this feature:
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