TCONS_00017336-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00017336-protein
Unique NameTCONS_00017336-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length346

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00017336-protein ID=TCONS_00017336-protein|Name=TCONS_00017336-protein|organism=Clytia hemisphaerica|type=polypeptide|length=346bp
MVSTRLKVQNFASDDDKPEPRSKFNALNFFSNEIEWNKLKEDLNQIDWDV
KLNSDDPQEILESINQICLDVCRGRIPVRTTKDTRKKSKVERYRRSLTKK
RRKITKQFLKCTSQSKKTKITKELLTIEKDLQKSFRDSKCYVENIAINSI
KKNSKYFFAYARKKAKMKKKIGPLLNTNGELTQRSKEMAEILSRQYVSVF
SAPKPFDIMQSENNELNVDIISDLQVTEDDLIKAINNLSQTAPGPDGFPA
IFLKQCKEELSIPLCILWRQSLDKGIVPDELKRCTITPIYKGGSRSLASN
YRPVALTSHVIKIFEKVLTAHIVKHMDENNLFNPNQHGFRSGRSCL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_009708XLOC_009708Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00017336TCONS_00017336Clytia hemisphaericatranscript
Blast
[Close]
BLAST of TCONS_00017336-protein vs. Swiss-Prot (Human)
Match: LORF2 (LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 8.709e-16
Identity = 86/290 (29.66%), Postives = 146/290 (50.34%), Query Frame = 0 
Query:   71 VCRGR-IPVRTTKDTRKKSKVERYRRSLTKKRRKITKQFLKCTSQSKKTKITK---ELLTIE--KDLQKSFRDSKCYVENIAINSIKKNSKYFFAYARKKAKMKKKIGPLLNTNGELTQRSKEMAEILSRQYVSVFSAPKPFDIMQSEN-------NELNVDIISDLQ--VTEDDLIKAINNL-SQTAPGPDGFPAIFLKQCKEELSIPLCILWRQSLDK-GIVPDELKRCTITPIYKGGSRSL-ASNYRPVALTSHVIKIFEKVLTAHIVKHMDENNLFNPNQHGFRSG 342
            VCRG+ I +   K  +++SK++    +LT + +++ KQ    +  S++ +ITK   EL  IE  K LQK       + E I  N I +      A   KK + K +I  + N  G++T    E+   + R+Y     A K  ++ + +          LN + +  L   +T  +++  IN+L ++ +PGPDGF A F ++ KEEL +P  +   QS++K GI+P+     +I  I K G  +    N+RP++L +   KI  K+L   I +H+ +  L + +Q GF  G
Sbjct:  294 VCRGKFIALNAYKRKQERSKID----TLTSQLKELEKQEQTHSKASRRQEITKIRAELKEIETQKTLQKINESRSWFFERI--NKIDRP----LARLIKKKREKNQIDTIKNDKGDITTDPTEIQTTI-REYYKHLYANKLENLEEMDTFLDTYTLPRLNQEEVESLNRPITGSEIVAIINSLPTKKSPGPDGFTAEFYQRYKEEL-VPFLLKLFQSIEKEGILPNSFYEASIILIPKPGRDTTKKENFRPISLMNIDAKILNKILANRIQQHIKK--LIHHDQVGFIPG 569
The following BLAST results are available for this feature:
BLAST of TCONS_00017336-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LORF28.709e-1629.66LINE-1 retrotransposable element ORF2 protein OS=H... [more]
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