TCONS_00017333 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017333
Unique NameTCONS_00017333
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1395

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017333 ID=TCONS_00017333|Name=TCONS_00017333|organism=Clytia hemisphaerica|type=transcript|length=1395bp
gcgatttatctggagaatttcaatattcaaaacaagagcagtgctcatag
cccgaagagtaggagttttacgctcgaaacgaaggaaaaTATGACGTAAC
CTAAGTGGTTATAAACAAGACATAACTAAACATCCTAGTTCAATTGAAAC
AAATTTTATCTCgggaatgggcttttccaaaaaaaaaccatataccccct
gttgaggaggttcatccctctgtggctggaaatgctgtaaccccctgCAA
TTCCAGgcaattccaggcaatttcaggtttaaacccctctgaaattttag
taggatttaaaaagctacccccatggaattctgccacatatcaaacctta
cccccttggaatggaaaatggacctcctcaacagtatacggttttttttc
ttcaaagaatgaCTGAAATGACTTATGATTAAAAGGCTATTAATTATGAG
ATGTATTACACTACAAAACTGCTCCAGCTGATTCATTTTCACCGAAAACT
TTGCCATAGATATTTATAGATTACATACAAACTGgtttccaaaaaaagtt
gaatctTGATGTCTATTTccaaatcaatttttcttttaattgaaatcaAC
AGTGTCCATTTCATGAACATAAAATAATGAAAGTATTGACATTTTACGAC
CCAAACATCATAGGCTTGGTCAGAATGGAATTCTCTCCCATCTCACAAGG
TCTTGCTCTCCAAATATGGGGAGAAATCATGACGTAATCTACATGATATG
ATTCAACAAAAAGTATCAGTTCAAAAACAACAAGAGCTATCATAATGCAT
TTTGAAATGCAGAAGCATtttgtaaaatgaaaatcttcatCAATGTCCAT
TGATATGTTTTGACATAATTGCAGCAATTCCTAAATTAGTCGTCATAGTT
ACTGTCTTCTTTGAATTTGAGCAACCAATTTATCCCTACAACTATCTTGC
ATGCTGATCAGGATTTAAAACTTTCACTTGTCTTCTCTTGTGAGCATAAT
ATTGCCAATGAAGAATTTGTTGTTCGTCAATGAATTTCGCACAAGGTGGA
TATACAAGTTCTTTACGAAATTGTTCATATTGTAACAACTCCAAAAACAT
AAGGCATTGTGGATACTTCAAGAACTTGGCATAGTCTGGCTCTTTCcagt
ataataaatattttagataattGATGAAACAGGAATCATCAAAGAACCCT
CGCTGAGCTAAAAAGTTTAAGTAGTGGGGATTGGCCAAACATTGCACAAA
TTCTAATTCAACTTCAAAACGTTTCTTTTCTTCAATACTcatatttcatt
tcaataataGTAAATCATGTAGcttgattatttttatttttagctaaAAG
CAAAGTAATTagttaaaatcttaaaaaagctAAAGCAATCTCCTN
Run BLAST on NCBI

protein sequence of TCONS_00017333-protein

>TCONS_00017333-protein ID=TCONS_00017333-protein|Name=TCONS_00017333-protein|organism=Clytia hemisphaerica|type=polypeptide|length=116bp
MSIEEKKRFEVELEFVQCLANPHYLNFLAQRGFFDDSCFINYLKYLLYWK
EPDYAKFLKYPQCLMFLELLQYEQFRKELVYPPCAKFIDEQQILHWQYYA
HKRRQVKVLNPDQHAR
Run BLAST on NCBI

transcript from alignment at sc0000264:215278..216672

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017333 ID=TCONS_00017333|Name=TCONS_00017333|organism=Clytia hemisphaerica|type=transcript|length=1395bp|location=Sequence derived from alignment at sc0000264:215278..216672 (Clytia hemisphaerica)
NAGGAGATTGCTTTagcttttttaagattttaactAATTACTTTGCTTtt
agctaaaaataaaaataatcaagCTACATGATTTACtattattgaaatga
aatatgAGTATTGAAGAAAAGAAACGTTTTGAAGTTGAATTAGAATTTGT
GCAATGTTTGGCCAATCCCCACTACTTAAACTTTTTAGCTCAGCGAGGGT
TCTTTGATGATTCCTGTTTCATCaattatctaaaatatttattatactgG
AAAGAGCCAGACTATGCCAAGTTCTTGAAGTATCCACAATGCCTTATGTT
TTTGGAGTTGTTACAATATGAACAATTTCGTAAAGAACTTGTATATCCAC
CTTGTGCGAAATTCATTGACGAACAACAAATTCTTCATTGGCAATATTAT
GCTCACAAGAGAAGACAAGTGAAAGTTTTAAATCCTGATCAGCATGCAAG
ATAGTTGTAGGGATAAATTGGTTGCTCAAATTCAAAGAAGACAGTAACTA
TGACGACTAATTTAGGAATTGCTGCAATTATGTCAAAACATATCAATGGA
CATTGatgaagattttcattttacaaaATGCTTCTGCATTTCAAAATGCA
TTATGATAGCTCTTGTTGTTTTTGAACTGATACTTTTTGTTGAATCATAT
CATGTAGATTACGTCATGATTTCTCCCCATATTTGGAGAGCAAGACCTTG
TGAGATGGGAGAGAATTCCATTCTGACCAAGCCTATGATGTTTGGGTCGT
AAAATGTCAATACTTTCATTATTTTATGTTCATGAAATGGACACTGTtga
tttcaattaaaagaaaaattgatttggAAATAGACATCAagattcaactt
tttttggaaacCAGTTTGTATGTAATCTATAAATATCTATGGCAAAGTTT
TCGGTGAAAATGAATCAGCTGGAGCAGTTTTGTAGTGTAATACATCTCAT
AATTAATAGCCTTTTAATCATAAGTCATTTCAGtcattctttgaagaaaa
aaaaccgtatactgttgaggaggtccattttccattccaagggggtaagg
tttgatatgtggcagaattccatgggggtagctttttaaatcctactaaa
atttcagaggggtttaaacctgaaattgcctggaattgcCTGGAATTGca
gggggttacagcatttccagccacagagggatgaacctcctcaacagggg
gtatatggtttttttttggaaaagcccattcccGAGATAAAATTTGTTTC
AATTGAACTAGGATGTTTAGTTATGTCTTGTTTATAACCACTTAGGTTAC
GTCATAttttccttcgtttcgagcgtaaaactcctactcttcgggctatg
agcactgctcttgttttgaatattgaaattctccagataaatcgc

Coding sequence (CDS) from alignment at sc0000264:215278..216672

>TCONS_00017333 ID=TCONS_00017333|Name=TCONS_00017333|organism=Clytia hemisphaerica|type=CDS|length=351bp|location=Sequence derived from alignment at sc0000264:215278..216672 (Clytia hemisphaerica)
atgAGTATTGAAGAAAAGAAACGTTTTGAAGTTGAATTAGAATTTGTGCA
ATGTTTGGCCAATCCCCACTACTTAAACTTTTTAGCTCAGCGAGGGTTCT
TTGATGATTCCTGTTTCATCaattatctaaaatatttattatactgGAAA
GAGCCAGACTATGCCAAGTTCTTGAAGTATCCACAATGCCTTATGTTTTT
GGAGTTGTTACAATATGAACAATTTCGTAAAGAACTTGTATATCCACCTT
GTGCGAAATTCATTGACGAACAACAAATTCTTCATTGGCAATATTATGCT
CACAAGAGAAGACAAGTGAAAGTTTTAAATCCTGATCAGCATGCAAGATA
G
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009705XLOC_009705Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017333-proteinTCONS_00017333-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017333-exon-sc0000264-1491911889:215278..216672TCONS_00017333-exon-sc0000264-1491911889:215278..216672Clytia hemisphaericaexon
TCONS_00017333-exon-sc0000264-1510915933:215278..216672TCONS_00017333-exon-sc0000264-1510915933:215278..216672Clytia hemisphaericaexon
TCONS_00017333-exon-sc0000264-1575043694:215278..216672TCONS_00017333-exon-sc0000264-1575043694:215278..216672Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000264supercontigsc0000264:215278..216672 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
51.5283	47.9548	50.5891	44.9619	13.7729	7.64454	10.5791	9.85657	8.88886	7.28506	7.66268	6.45072	5.23301	4.30621	6.74579	6.20029	10.3373	10.1152	5.70302	4.70309	14.8423	12.5465	30.1951	25.1462	3.42487	4.95918	7.38188	5.28305	10.7483	11.0806
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR008831Mediator_Med31
Vocabulary: Cellular Component
TermDefinition
GO:0016592mediator complex
Vocabulary: Molecular Function
TermDefinition
GO:0001104RNA polymerase II transcription cofactor activity
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0016592 mediator complex
molecular_function GO:0001104 RNA polymerase II transcription cofactor activity
Blast
[Close]
BLAST of TCONS_00017333 vs. Swiss-Prot (Human)
Match: MED31 (Mediator of RNA polymerase II transcription subunit 31 OS=Homo sapiens GN=MED31 PE=1 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.567e-47
Identity = 76/96 (79.17%), Postives = 86/96 (89.58%), Query Frame = -2 
Query:  984 RFEVELEFVQCLANPHYLNFLAQRGFFDDSCFINYLKYLLYWKEPDYAKFLKYPQCLMFLELLQYEQFRKELVYPPCAKFIDEQQILHWQYYAHKR 1271
            RF++ELEFVQCLANP+YLNFLAQRG+F D  F+NYLKYLLYWK+P+YAK+LKYPQCL  LELLQYE FRKELV   CAKFIDEQQILHWQ+Y+ KR
Sbjct:   17 RFQLELEFVQCLANPNYLNFLAQRGYFKDKAFVNYLKYLLYWKDPEYAKYLKYPQCLHMLELLQYEHFRKELVNAQCAKFIDEQQILHWQHYSRKR 112
The following BLAST results are available for this feature:
BLAST of TCONS_00017333 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MED311.567e-4779.17Mediator of RNA polymerase II transcription subuni... [more]
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