TCONS_00017333-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00017333-protein
Unique NameTCONS_00017333-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length116

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00017333-protein ID=TCONS_00017333-protein|Name=TCONS_00017333-protein|organism=Clytia hemisphaerica|type=polypeptide|length=116bp
MSIEEKKRFEVELEFVQCLANPHYLNFLAQRGFFDDSCFINYLKYLLYWK
EPDYAKFLKYPQCLMFLELLQYEQFRKELVYPPCAKFIDEQQILHWQYYA
HKRRQVKVLNPDQHAR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_009705XLOC_009705Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00017333TCONS_00017333Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008831Mediator_Med31
Vocabulary: Cellular Component
TermDefinition
GO:0016592mediator complex
Vocabulary: Molecular Function
TermDefinition
GO:0001104RNA polymerase II transcription cofactor activity
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0016592 mediator complex
molecular_function GO:0001104 RNA polymerase II transcription cofactor activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008831Mediator complex, subunit Med31PFAMPF05669Med31coord: 6..99
e-value: 7.5E-39
score: 131.5

Blast
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BLAST of TCONS_00017333-protein vs. Swiss-Prot (Human)
Match: MED31 (Mediator of RNA polymerase II transcription subunit 31 OS=Homo sapiens GN=MED31 PE=1 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 2.684e-53
Identity = 76/96 (79.17%), Postives = 86/96 (89.58%), Query Frame = 0 
Query:    8 RFEVELEFVQCLANPHYLNFLAQRGFFDDSCFINYLKYLLYWKEPDYAKFLKYPQCLMFLELLQYEQFRKELVYPPCAKFIDEQQILHWQYYAHKR 103
            RF++ELEFVQCLANP+YLNFLAQRG+F D  F+NYLKYLLYWK+P+YAK+LKYPQCL  LELLQYE FRKELV   CAKFIDEQQILHWQ+Y+ KR
Sbjct:   17 RFQLELEFVQCLANPNYLNFLAQRGYFKDKAFVNYLKYLLYWKDPEYAKYLKYPQCLHMLELLQYEHFRKELVNAQCAKFIDEQQILHWQHYSRKR 112
The following BLAST results are available for this feature:
BLAST of TCONS_00017333-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MED312.684e-5379.17Mediator of RNA polymerase II transcription subuni... [more]
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