TCONS_00017324 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017324
Unique NameTCONS_00017324
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1088

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017324 ID=TCONS_00017324|Name=TCONS_00017324|organism=Clytia hemisphaerica|type=transcript|length=1088bp
TTTAGAtcgtaataaaaaaaacaacaaaactcaATCCAACAAGTTCTAAT
CCAACCATGAGTAATAACTACACTCTCACCAAAGATGAGTTGGTTCGAAC
CATAACAGATCAATTACAAGAGGTCGAGATTCTAACAGCAATGTTTCCCG
AGGAAGGTGGATTGGTTTGGACAGATCCATCCATTCTTATTGATGCTGAG
GAATATCGAGATTCGGAAGGTTGTTCACCAAACTGTATTCAATGCCTTGC
ATTCGAGTTGAATCTGAATACTGAGGTTAATAACCAGACCAATCTGGTCT
TCAAATTATCCATCAAGCTACCTAAAGACTATCCACTTTCTCGACCAGAG
CTGTCAGTCATTTCAGATCAAATGAGTCGTGAAGAACTGATTAATATTAA
AAAAGCTTTGAATGAGTTTGTATTAACCTTACCAAATGATGAGCATATTC
TTCTGGAGATAATCTTATGGTTGAAGGATAACATAGGTTCGTATTATAAT
GGAGATAAAACGTCACAACAAGCTGAATCGTCTAAAGCTAACACTGAGGG
GAATACAGATATATTGACATCAATGTGGTTGTATATGCATCATATATATT
CTAAGCACAAACGGAAAGACATTCTGAATTGGAGTCATGATTTCGGGTTA
ACCGGATTCTCTCTACCGGGAAAACCGGGTTTAGTTTACATCGAAGGACA
ATCAAAAAATGTAGAAGAGTTTTTCGATCGTTTGAAATCGCTACCTTGGA
AGAGTATACAGTGTCGATCTAAAGAAGATattgaaaaacgaatttttaCG
GATTTCAAAGAAATGAGTTTTGATCCTCATGGGTCACGTGACTACCACAT
GGATTTTGGtttgttttataaatttttagttgATCATGGGCTGGGTCACA
TgtttaaggaaatttttggtATCGAAGGTCAAATTAAAGATGAGAAATGA
gatgttttaagaaaaacaaatgcCTGAAAATTCTTGTTTTTGCATGGCCT
TCTAACGTTGTCTAGATGTTATTTCCCGGCTTGAAGTGACGGAGACTTAG
CGTAAATCAATGTCGGCCTAAAGGCAGGCCAATTAATT
Run BLAST on NCBI

protein sequence of TCONS_00017324-protein

>TCONS_00017324-protein ID=TCONS_00017324-protein|Name=TCONS_00017324-protein|organism=Clytia hemisphaerica|type=polypeptide|length=297bp
MSNNYTLTKDELVRTITDQLQEVEILTAMFPEEGGLVWTDPSILIDAEEY
RDSEGCSPNCIQCLAFELNLNTEVNNQTNLVFKLSIKLPKDYPLSRPELS
VISDQMSREELINIKKALNEFVLTLPNDEHILLEIILWLKDNIGSYYNGD
KTSQQAESSKANTEGNTDILTSMWLYMHHIYSKHKRKDILNWSHDFGLTG
FSLPGKPGLVYIEGQSKNVEEFFDRLKSLPWKSIQCRSKEDIEKRIFTDF
KEMSFDPHGSRDYHMDFGLFYKFLVDHGLGHMFKEIFGIEGQIKDEK
Run BLAST on NCBI

transcript from alignment at sc0000264:36301..37388

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017324 ID=TCONS_00017324|Name=TCONS_00017324|organism=Clytia hemisphaerica|type=transcript|length=1088bp|location=Sequence derived from alignment at sc0000264:36301..37388 (Clytia hemisphaerica)
AATTAATTGGCCTGCCTTTAGGCCGACATTGATTTACGCTAAGTCTCCGT
CACTTCAAGCCGGGAAATAACATCTAGACAACGTTAGAAGGCCATGCAAA
AACAAGAATTTTCAGgcatttgtttttcttaaaacatcTCATTTCTCATC
TTTAATTTGACCTTCGATaccaaaaatttccttaaacATGTGACCCAGCC
CATGATcaactaaaaatttataaaacaaaCCAAAATCCATGTGGTAGTCA
CGTGACCCATGAGGATCAAAACTCATTTCTTTGAAATCCGtaaaaattcg
tttttcaatATCTTCTTTAGATCGACACTGTATACTCTTCCAAGGTAGCG
ATTTCAAACGATCGAAAAACTCTTCTACATTTTTTGATTGTCCTTCGATG
TAAACTAAACCCGGTTTTCCCGGTAGAGAGAATCCGGTTAACCCGAAATC
ATGACTCCAATTCAGAATGTCTTTCCGTTTGTGCTTAGAATATATATGAT
GCATATACAACCACATTGATGTCAATATATCTGTATTCCCCTCAGTGTTA
GCTTTAGACGATTCAGCTTGTTGTGACGTTTTATCTCCATTATAATACGA
ACCTATGTTATCCTTCAACCATAAGATTATCTCCAGAAGAATATGCTCAT
CATTTGGTAAGGTTAATACAAACTCATTCAAAGCTTTTTTAATATTAATC
AGTTCTTCACGACTCATTTGATCTGAAATGACTGACAGCTCTGGTCGAGA
AAGTGGATAGTCTTTAGGTAGCTTGATGGATAATTTGAAGACCAGATTGG
TCTGGTTATTAACCTCAGTATTCAGATTCAACTCGAATGCAAGGCATTGA
ATACAGTTTGGTGAACAACCTTCCGAATCTCGATATTCCTCAGCATCAAT
AAGAATGGATGGATCTGTCCAAACCAATCCACCTTCCTCGGGAAACATTG
CTGTTAGAATCTCGACCTCTTGTAATTGATCTGTTATGGTTCGAACCAAC
TCATCTTTGGTGAGAGTGTAGTTATTACTCATGGTTGGATTAGAACTTGT
TGGATtgagttttgttgttttttttattacgaTCTAAA

Coding sequence (CDS) from alignment at sc0000264:36301..37388

>TCONS_00017324 ID=TCONS_00017324|Name=TCONS_00017324|organism=Clytia hemisphaerica|type=CDS|length=894bp|location=Sequence derived from alignment at sc0000264:36301..37388 (Clytia hemisphaerica)
TCATTTCTCATCTTTAATTTGACCTTCGATaccaaaaatttccttaaacA
TGTGACCCAGCCCATGATcaactaaaaatttataaaacaaaCCAAAATCC
ATGTGGTAGTCACGTGACCCATGAGGATCAAAACTCATTTCTTTGAAATC
CGtaaaaattcgtttttcaatATCTTCTTTAGATCGACACTGTATACTCT
TCCAAGGTAGCGATTTCAAACGATCGAAAAACTCTTCTACATTTTTTGAT
TGTCCTTCGATGTAAACTAAACCCGGTTTTCCCGGTAGAGAGAATCCGGT
TAACCCGAAATCATGACTCCAATTCAGAATGTCTTTCCGTTTGTGCTTAG
AATATATATGATGCATATACAACCACATTGATGTCAATATATCTGTATTC
CCCTCAGTGTTAGCTTTAGACGATTCAGCTTGTTGTGACGTTTTATCTCC
ATTATAATACGAACCTATGTTATCCTTCAACCATAAGATTATCTCCAGAA
GAATATGCTCATCATTTGGTAAGGTTAATACAAACTCATTCAAAGCTTTT
TTAATATTAATCAGTTCTTCACGACTCATTTGATCTGAAATGACTGACAG
CTCTGGTCGAGAAAGTGGATAGTCTTTAGGTAGCTTGATGGATAATTTGA
AGACCAGATTGGTCTGGTTATTAACCTCAGTATTCAGATTCAACTCGAAT
GCAAGGCATTGAATACAGTTTGGTGAACAACCTTCCGAATCTCGATATTC
CTCAGCATCAATAAGAATGGATGGATCTGTCCAAACCAATCCACCTTCCT
CGGGAAACATTGCTGTTAGAATCTCGACCTCTTGTAATTGATCTGTTATG
GTTCGAACCAACTCATCTTTGGTGAGAGTGTAGTTATTACTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009696XLOC_009696Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017324-proteinTCONS_00017324-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017324-exon-sc0000264-1491911889:36301..37388TCONS_00017324-exon-sc0000264-1491911889:36301..37388Clytia hemisphaericaexon
TCONS_00017324-exon-sc0000264-1510915933:36301..37388TCONS_00017324-exon-sc0000264-1510915933:36301..37388Clytia hemisphaericaexon
TCONS_00017324-exon-sc0000264-1575043694:36301..37388TCONS_00017324-exon-sc0000264-1575043694:36301..37388Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000264supercontigsc0000264:36301..37388 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
13.7633	11.2566	3.15325	2.05664	0.816446	1.33334	4.6183	5.14946	4.11543	3.62311	4.49807	4.32776	5.90549	5.04572	5.45462	6.17338	4.90847	5.86953	4.977	3.54687	5.5804	3.71171	28.3219	23.3085	9.27355	10.7516	4.59352	5.31578	16.0377	16.6594
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006575RWD-domain
IPR017359UCP038021_RWD
IPR010541DUF1115
IPR016135UBQ-conjugating_enzyme/RWD
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00017324 vs. Swiss-Prot (Human)
Match: RWD2B (RWD domain-containing protein 2B OS=Homo sapiens GN=RWDD2B PE=1 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.223e-52
Identity = 107/302 (35.43%), Postives = 162/302 (53.64%), Query Frame = 3 
Query:   69 YTLTKDELVRTITDQLQEVEILTAMFPEEGGLVWTDP---SILIDAEEYRDSEGCSPNCIQCLAFELNLNTEVNNQTNLVFKLSIKLPKDYPLSRPELSVISDQMSREELINIKKALNEFVLTLPNDEHILLEIILWLKDNIGSYYNGDKTSQQAESSKANTEGNTD-ILTSMWLYMHHIYSKHKRKDILNWSHDFGLTGFSLPGKPGLVYIEGQSKNVEEFFDRLKSLPWKSIQCRSKEDI----------EKRIFTDFKEMSFDPHGSRDYHMDFGLFYKFLVDHGLGHMFKEIFGIEGQ 932
            YT  K   +     QL E+++L +MFP E  L+  D    + L D  E +  EG S      + F +N+N +V+++   +F L+  LP  YP   PE++V S  +SR +   +   L  F+    + +  +L    W++++   Y + D +S     S   +    D I T +W+Y HHIY+K KRK+IL W+ +  L+GFS+PGKPG+V +EG     EEF+ RL+ L WK I  R +EDI           +R F+ F+E  F  +G+R  HMDFG  Y+FL   G G +F+  FG+EGQ
Sbjct:   25 YTCPKMIEMEQAEAQLAELDLLASMFPGENELIVNDQLAVAELKDCIEKKTMEGRSSK----VYFTINMNLDVSDEKMAMFSLACILPFKYPAVLPEITVRSVLLSRSQQTQLNTDLTAFLQKHCHGDVCILNATEWVREHASGYVSRDTSSSPTTGSTVQS---VDLIFTRLWIYSHHIYNKCKRKNILEWAKELSLSGFSMPGKPGVVCVEGPQSACEEFWSRLRKLNWKRILIRHREDIPFDGTNDETERQRKFSIFEEKVFSVNGARGNHMDFGQLYQFLNTKGCGDVFQMFFGVEGQ 319
The following BLAST results are available for this feature:
BLAST of TCONS_00017324 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RWD2B1.223e-5235.43RWD domain-containing protein 2B OS=Homo sapiens G... [more]
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