TCONS_00017324-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00017324-protein
Unique NameTCONS_00017324-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length297

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00017324-protein ID=TCONS_00017324-protein|Name=TCONS_00017324-protein|organism=Clytia hemisphaerica|type=polypeptide|length=297bp
MSNNYTLTKDELVRTITDQLQEVEILTAMFPEEGGLVWTDPSILIDAEEY
RDSEGCSPNCIQCLAFELNLNTEVNNQTNLVFKLSIKLPKDYPLSRPELS
VISDQMSREELINIKKALNEFVLTLPNDEHILLEIILWLKDNIGSYYNGD
KTSQQAESSKANTEGNTDILTSMWLYMHHIYSKHKRKDILNWSHDFGLTG
FSLPGKPGLVYIEGQSKNVEEFFDRLKSLPWKSIQCRSKEDIEKRIFTDF
KEMSFDPHGSRDYHMDFGLFYKFLVDHGLGHMFKEIFGIEGQIKDEK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_009696XLOC_009696Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00017324TCONS_00017324Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006575RWD-domain
IPR017359UCP038021_RWD
IPR010541DUF1115
IPR016135UBQ-conjugating_enzyme/RWD
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006575RWD domainSMARTSM00591RWD2001bcoord: 21..146
e-value: 2.1E-5
score: 34.0
IPR006575RWD domainPFAMPF05773RWDcoord: 18..143
e-value: 1.0E-11
score: 45.0
IPR006575RWD domainPROSITEPS50908RWDcoord: 21..146
score: 16.45
IPR017359Uncharacterised conserved protein UCP038021, RWDPIRSFPIRSF038021UCP038021_RWDD2coord: 3..292
e-value: 1.1E-71
score: 239.0
IPR010541Domain of unknown function DUF1115PFAMPF06544DUF1115coord: 176..262
e-value: 1.1E-11
score: 45.0
IPR016135Ubiquitin-conjugating enzyme/RWD-likeGENE3D3.10.110.10coord: 9..153
e-value: 9.7E-15
score: 54.1
IPR016135Ubiquitin-conjugating enzyme/RWD-likeSUPERFAMILY54495UBC-likecoord: 18..151

Blast
[Close]
BLAST of TCONS_00017324-protein vs. Swiss-Prot (Human)
Match: RWD2B (RWD domain-containing protein 2B OS=Homo sapiens GN=RWDD2B PE=1 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 9.715e-55
Identity = 107/303 (35.31%), Postives = 162/303 (53.47%), Query Frame = 0 
Query:    4 NYTLTKDELVRTITDQLQEVEILTAMFPEEGGLVWTDP---SILIDAEEYRDSEGCSPNCIQCLAFELNLNTEVNNQTNLVFKLSIKLPKDYPLSRPELSVISDQMSREELINIKKALNEFVLTLPNDEHILLEIILWLKDNIGSYYNGDKTSQQAESSKANTEGNTD-ILTSMWLYMHHIYSKHKRKDILNWSHDFGLTGFSLPGKPGLVYIEGQSKNVEEFFDRLKSLPWKSIQCRSKEDI----------EKRIFTDFKEMSFDPHGSRDYHMDFGLFYKFLVDHGLGHMFKEIFGIEGQ 292
             YT  K   +     QL E+++L +MFP E  L+  D    + L D  E +  EG S      + F +N+N +V+++   +F L+  LP  YP   PE++V S  +SR +   +   L  F+    + +  +L    W++++   Y + D +S     S   +    D I T +W+Y HHIY+K KRK+IL W+ +  L+GFS+PGKPG+V +EG     EEF+ RL+ L WK I  R +EDI           +R F+ F+E  F  +G+R  HMDFG  Y+FL   G G +F+  FG+EGQ
Sbjct:   24 TYTCPKMIEMEQAEAQLAELDLLASMFPGENELIVNDQLAVAELKDCIEKKTMEGRSSK----VYFTINMNLDVSDEKMAMFSLACILPFKYPAVLPEITVRSVLLSRSQQTQLNTDLTAFLQKHCHGDVCILNATEWVREHASGYVSRDTSSSPTTGSTVQS---VDLIFTRLWIYSHHIYNKCKRKNILEWAKELSLSGFSMPGKPGVVCVEGPQSACEEFWSRLRKLNWKRILIRHREDIPFDGTNDETERQRKFSIFEEKVFSVNGARGNHMDFGQLYQFLNTKGCGDVFQMFFGVEGQ 319
The following BLAST results are available for this feature:
BLAST of TCONS_00017324-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RWD2B9.715e-5535.31RWD domain-containing protein 2B OS=Homo sapiens G... [more]
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