TCONS_00017314 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017314
Unique NameTCONS_00017314
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2714

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017314 ID=TCONS_00017314|Name=TCONS_00017314|organism=Clytia hemisphaerica|type=transcript|length=2714bp
agtcttttttaaatGTGTTGTAAATTCTTCGGGAAAATATTTCAGACTGT
TTTGCAGAAGAGGAATAATTTATTGACTAATCAACCTAAAATGTCTAAAA
TTTAAACTTGTCTCTTTTTTGATAGTATTTCATATTCGTATTGTCAACTT
TTCAGCATTATGATCTTGCCAATTTTTCAGGTGAATGAAAGTGATGTAGA
GATGTTGTTCTCAGAGAATTTGAGTATTGTCAAACAAGAGTTAGATCGAA
CTAGATTCATCTTACAAGGAAGCTTGGATGAAAATAACCAACTTCATAAA
GAATACGCTCTTTATCAGAAATGTATGGAAGAACGAGATCGACACATCGA
TTTGCAATTATCCGATGTCATCTATCGAATTGAGATTCACATCGAAAGAA
GACTCAATAAACGAAGATGTTGTTGTTTTGGTTTGAAACGTAGCGTACGA
CAAGAATTACAATTTTTACATACAGTTCAAAACCATTTGTATTACATACA
GTCTATATTAAGCGTGGATTTTATTACAGATTACAAAAGTAAATTGACTA
AAAGTAGGAAAACAAGTGCTTCGTGTAAGGATTTGAGATCATACTTCGTT
TGATGGTATCATTTTTCTTGCTCGTTGGATTgtgtcaaaatattttgaaa
gaatgccGTCACATGATACGATATTACAGAGCAACACACTTCACTTGGAG
AGTTCAAAAGGTCATTGGTAGACTAATTTTGTGGTATAAtgtgatttttt
tctcgaattttaaCGAATTtggtttcaaatgtttttttgtaatgAAAGAG
GGGATCTGCGAGCAAGACTGTCCTCCGAAGTCAAATATATAAATATTAAT
AACTGGTCTTTTTATGTATATAAAATAAACTAGTGACTAGTGCAATCAAA
GTCATACATAATATTTGAttaaaaggggaattccctgcaaaattttaaaa
actacaaatgatttttaagtgctctaAGTTAATGCTGGAATATGTAGAGC
TTCAACTCTTAAGATCATACATTAGACTTAGGAAGGAAGAAGACCTTAGG
ATATTGGGattcaaaagctcaaaaaatatcCCAATGAAGCCGAGGCCACT
AAACCattaaatcaaaatatctaATGAAATATAGCGGAAGTACTGAAATC
ACCGTTCTCaaccgaactttaaattctgaaaaacgttgaaaatatccgaa
attctcaaaatgttttttgaactGACTGTAGGATATAGTAAGTTATATCT
CAAAAATTTGTGCTCTTGTGCTTTCATTCTCGTGCAACAATACAGTAAAC
TGGATCAAGTGtttcatgaaattgtcaatcaCTCTCGATCCTATCTGCTA
TTTTGTGGttgttttgcatttttcaaaaacttccaATTTGTCACGActtt
ttgttttgtctttttaatTTCCTGCAGGGTCGTTTTGTTCAAGTTGCCAC
CGCCTAATGGATGGTGCCATATCCCATAATCCTCGACGACTTTTCCTGTT
TTGGTGTTCACGACTTTCAAACGGTATTTAGAACTGAATTCTGATACTGT
GCACAACTCCGATCTTTTTGTAGTGATGGTATAATAGTTCTTTAAAGTTA
ATGAGAATATTGACGTTATACAGACTGTTTTGAGGGTGCCATCTTTTCGT
ACGTCGTCTGGAAGTGTTATTTCGCATCTGCCATTTGGNATCAAAATTTT
GTGCTCTTGTGCTTTCATTCTCGTGCAACAATACAGTAAACTGAATCAAG
TGTTTCACAAAATTGTCAATCACTCTCGATCCTATCTGCTATTTTGTGGt
tgttttgcatttttcaaaaacttccaATTTGTCATGActttttgttttgt
ctttttaatTTCCTGCAGGGTCGTTTTGTTCAAGTTGTCACCGCCTAATG
GATGGTGCCAAATCCCATAATCCTCGACGACTTTTCCTGTTTTGGTGTTC
ACGACTTTCAAACGGTATTTAGAACTGAATTCTGATACTGTGCACAACTC
CGATCTTTTTGTAGTGATGGTATAATAGTTCTTTAAAGTTAATGAGAATA
TTGACGTTATACAGACTGTTTTGAGGGTGCCATCTTTTCGTACGTCGTCT
GGAAGTGTTATTTCGCATCTGCCATTTGgttgtttacattttgtgatttt
ggttGTGATTATTGGCGAGGCTTGATTTGATCCAGTTACTGTTACTTCAT
ATGAGGGATTAAAACATTTCGATAAAGATGATTTTCTCCAAGATAAAACC
CATTTATTTGTGTCAGATTCCTTGAATCGTATATCTCGAGCATCGTGGTT
TGATATGCAATCGAAAAGGTGTTGGGAAGGAACAAAAGCTTGAGGGTGTG
TCAAAACTGTCACTTTTTTCGATCTATCGACAGCCTTTAAACTAGAAATT
CTTTGTTTCAACAAGTCTTTGTCATAAACACTCAACGGAGTCGGGCAAAA
GAATTGATCTACCTTTGTCGAATAGAAACATGATTTTGTCTCGGTGACTT
TGCCATTGATGTTTGTCCATTGTAGAAAGATGTCTTTACTTTGACTTGCG
AGAACGTTAGAAGGTCTTTTGAACCGGAATATGATTTCACGTCCAGCACG
TAAGAAACATAATGGCGCCGGAGATGTTGAGTTGACGTAAGAACAATGAC
GTAATGTAAGAAAGATGGAAATGAGGTTGGTTAAAAatgctgtttttgtt
tttttcatttttgc
Run BLAST on NCBI

transcript from alignment at sc0000264:307846..311352-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017314 ID=TCONS_00017314|Name=TCONS_00017314|organism=Clytia hemisphaerica|type=transcript|length=3507bp|location=Sequence derived from alignment at sc0000264:307846..311352- (Clytia hemisphaerica)
AGTCTTTTTTAAATGTGTTGTAAATTCTTCGGGAAAATATTTCAGACTGT
TTTGCAGAAGAGGAATAATTTATTGACTAATCAACCTAAAATGTCTAAAA
TTTAAACTTGTCTCTTTTTTGATAGTATTTCATATTCGTATTGTCAACTT
TTCAGCATTATGATCTTGCCAATTTTTCAGGTGAATGAAAGTGATGTAGA
GATGTTGTTCTCAGAGAATTTGAGTATTGTCAAACAAGAGTTAGATCGAA
CTAGATTCATCTTACAAGGAAGCTTGGATGAAAATAACCAACTTCATAAA
GAATACGCTCTTTATCAGGTACTAACAATATTATTCACCACTTCAGGTTT
TTTCTATCATTTTTTAAACCTCCGAGTATATCCCCCTCGTTTAGGTTTAA
AGTTTTCCAAATCTTTCTCAGAATAAATCATAGTCCGTATAAGAAACCCC
GGTCTGGATGCCTTTTGTTTCCTTTTATTGTTGCGAACTTGAACTTGTGT
CGAGAACTTATTTTGTTTTGTTCACTTTTTGATCATGTGATTAACTTTTG
AACCAATCCCAAGAGGAGTATTTGGTAACGTGACCAAAAACTGAGCAAAA
CGATTTTTATAACAAAAAGTTACAACAATGCGCTTCCAGACCAGGGTTTT
TTATACGGACTGTGAATAAATCAACTCAGAAAATGAATTAAACTGAACTA
AAGTGTCGAGGAATNAATCTGTGAATAAATCAACTCAGAAAATGAATTAA
ACTGAATTAAAGTGTCGAGGAATAGGAAAGATTTCCTATGGAAAACAACC
ACTAAATTAGCCTAGAGATCCAAGCTGCCAATTATTTCCTAATCTTAATG
GTTCTGCCATTATGTAATAAGTTGGAGTTTTTAAAAATTGTAATAAAACA
ATTTCCTTACTTTTTCTAAAGGACTTGTCATCTCTTCAAATTTATAATTA
TTAATGTATCTTATAAACACTCCAGCTCGTCCCTTCAGGAAAACCAGGCG
GGAAACCAGAAACATCAAAAATGAAAAAAAGATTACAGGCTGGAATTAAA
TCCAAAGTTTGCTTCCTTTCTTTGCGAGGCTAAGAGATTTTCCTTTATTT
TACGTTGTTAGAAATGTATGGAAGAACGAGATCGACACATCGATTTGCAA
TTATCCGATGTCATCTATCGAATTGAGATTCACATCGAAAGAAGACTCAA
TAAACGAAGATGTTGTTGTTTTGGTTTGAAACGTAGCGTACGACAAGAAT
TACAATTTTTACATACAGTTCAAAACCATTTGTATTACATACAGTCTATA
TTAAGCGTGGATTTTATTACAGATTACAAAAGTAAATTGACTAAAAGTAG
GAAAACAAGTGCTTCGTGTAAGGATTTGAGATCATACTTCGTTTGATGGT
ATCATTTTTCTTGCTCGTTGGATTGTGTCAAAATATTTTGAAAGAATGCC
GTCACATGATACGATATTACAGAGCAACACACTTCACTTGGAGAGTTCAA
AAGGTCATTGGTAGACTAATTTTGTGGTATAATGTGATTTTTTTCTCGAA
TTTTAACGAATTTGGTTTCAAATGTTTTTTTGTAATGAAAGAGGGGATCT
GCGAGCAAGACTGTCCTCCGAAGTCAAATATATAAATATTAATAACTGGT
CTTTTTATGTATATAAAATAAACTAGTGACTAGTGCAATCAAAGTCATAC
ATAATATTTGATTAAAAGGGGAATTCCCTGCAAAATTTTAAAAACTACAA
ATGATTTTTAAGTGCTCTAAGTTAATGCTGGAATATGTAGAGCTTCAACT
CTTAAGATCATACATTAGACTTAGGAAGGAAGAAGACCTTAGGATATTGG
GATTCAAAAGCTCAAAAAATATCCCAATGAAGCCGAGGCCACTAAACCAT
TAAATCAAAATATCTAATGAAATATAGCGGAAGTACTGAAATCACCGTTC
TCAACCGAACTTTAAATTCTGAAAAACGTTGAAAATATCCGAAATTCTCA
AAATGTTTTTTGAACTGACTGTAGGATATAGTAAGTTATATCTCAAAAAT
TTGTGCTCTTGTGCTTTCATTCTCGTGCAACAATACAGTAAACTGGATCA
AGTGTTTCATGAAATTGTCAATCACTCTCGATCCTATCTGCTATTTTGTG
GTTGTTTTGCATTTTTCAAAAACTTCCAATTTGTCACGACTTTTTGTTTT
GTCTTTTTAATTTCCTGCAGGGTCGTTTTGTTCAAGTTGCCACCGCCTAA
TGGATGGTGCCATATCCCATAATCCTCGACGACTTTTCCTGTTTTGGTGT
TCACGACTTTCAAACGGTATTTAGAACTGAATTCTGATACTGTGCACAAC
TCCGATCTTTTTGTAGTGATGGTATAATAGTTCTTTAAAGTTAATGAGAA
TATTGACGTTATACAGACTGTTTTGAGGGTGCCATCTTTTCGTACGTCGT
CTGGAAGTGTTATTTCGCATCTGCCATTTGGNATCAAAATTTTGTGCTCT
TGTGCTTTCATTCTCGTGCAACAATACAGTAAACTGAATCAAGTGTTTCA
CAAAATTGTCAATCACTCTCGATCCTATCTGCTATTTTGTGGTTGTTTTG
CATTTTTCAAAAACTTCCAATTTGTCATGACTTTTTGTTTTGTCTTTTTA
ATTTCCTGCAGGGTCGTTTTGTTCAAGTTGTCACCGCCTAATGGATGGTG
CCAAATCCCATAATCCTCGACGACTTTTCCTGTTTTGGTGTTCACGACTT
TCAAACGGTATTTAGAACTGAATTCTGATACTGTGCACAACTCCGATCTT
TTTGTAGTGATGGTATAATAGTTCTTTAAAGTTAATGAGAATATTGACGT
TATACAGACTGTTTTGAGGGTGCCATCTTTTCGTACGTCGTCTGGAAGTG
TTATTTCGCATCTGCCATTTGGTTGTTTACATTTTGTGATTTTGGTTGTG
ATTATTGGCGAGGCTTGATTTGATCCAGTTACTGTTACTTCATATGAGGG
ATTAAAACATTTCGATAAAGATGATTTTCTCCAAGATAAAACCCATTTAT
TTGTGTCAGATTCCTTGAATCGTATATCTCGAGCATCGTGGTTTGATATG
CAATCGAAAAGGTGTTGGGAAGGAACAAAAGCTTGAGGGTGTGTCAAAAC
TGTCACTTTTTTCGATCTATCGACAGCCTTTAAACTAGAAATTCTTTGTT
TCAACAAGTCTTTGTCATAAACACTCAACGGAGTCGGGCAAAAGAATTGA
TCTACCTTTGTCGAATAGAAACATGATTTTGTCTCGGTGACTTTGCCATT
GATGTTTGTCCATTGTAGAAAGATGTCTTTACTTTGACTTGCGAGAACGT
TAGAAGGTCTTTTGAACCGGAATATGATTTCACGTCCAGCACGTAAGAAA
CATAATGGCGCCGGAGATGTTGAGTTGACGTAAGAACAATGACGTAATGT
AAGAAAGATGGAAATGAGGTTGGTTAAAAATGCTGTTTTTGTTTTTTTCA
TTTTTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009689XLOC_009689Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017314-exon-sc0000264-1575043694:311035..311352TCONS_00017314-exon-sc0000264-1575043694:311035..311352Clytia hemisphaericaexon
TCONS_00017314-exon-sc0000264-1575043694:307846..310241TCONS_00017314-exon-sc0000264-1575043694:307846..310241Clytia hemisphaericaexon
TCONS_00017314-exon-sc0000264-1510915933:311035..311352TCONS_00017314-exon-sc0000264-1510915933:311035..311352Clytia hemisphaericaexon
TCONS_00017314-exon-sc0000264-1510915933:307846..310241TCONS_00017314-exon-sc0000264-1510915933:307846..310241Clytia hemisphaericaexon
TCONS_00017314-exon-sc0000264-1491911889:311035..311352TCONS_00017314-exon-sc0000264-1491911889:311035..311352Clytia hemisphaericaexon
TCONS_00017314-exon-sc0000264-1491911889:307846..310241TCONS_00017314-exon-sc0000264-1491911889:307846..310241Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000264supercontigsc0000264:307846..311352 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.580674	0.759601	0.208466	0.329459	0	0.332035	0.166571	0.162093	0.228217	0.194782	0	0.056594	0.27794	0.3841	0.132896	0.495095	1.3818	1.04191	1.02376	0.602513	0.561428	0.661236	0.621039	0.944857	0.332741	0.761015	0.541747	0.196514	0.450888	0.129075
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017314 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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