|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017307 ID=TCONS_00017307|Name=TCONS_00017307|organism=Clytia hemisphaerica|type=transcript|length=2321bpRun BLAST on NCBI protein sequence of TCONS_00017307-protein >TCONS_00017307-protein ID=TCONS_00017307-protein|Name=TCONS_00017307-protein|organism=Clytia hemisphaerica|type=polypeptide|length=446bp MGDIQKCSMLLFILLTLVPSVKPDALQLTSETYQPTLDKNKVVFINFYADRun BLAST on NCBI transcript from alignment at sc0000264:228875..238748- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00017307 ID=TCONS_00017307|Name=TCONS_00017307|organism=Clytia hemisphaerica|type=transcript|length=9874bp|location=Sequence derived from alignment at sc0000264:228875..238748- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000264:228875..238748- >TCONS_00017307 ID=TCONS_00017307|Name=TCONS_00017307|organism=Clytia hemisphaerica|type=CDS|length=14751bp|location=Sequence derived from alignment at sc0000264:228875..238748- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00017307 vs. Swiss-Prot (Human)
Match: ERP44 (Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1) HSP 1 Score: 345.895 bits (886), Expect = 2.001e-110 Identity = 186/443 (41.99%), Postives = 258/443 (58.24%), Query Frame = 2
Query: 140 LTMGDIQKCSMLLFILLTLVPSVKPDALQLTSETYQPTLDKNKVVFINFYADWCMFSQQLAPIFHKAADILHEEFDN---VKLGRVDCEQQQDIALQNAVSKYPTLKIYRDGKALRKEYRGQRSVDAFSQFIKQHLKPSVTDVTKLEDMK-VDENTNTVIAYFEGKGSPIYKTFEKVADELRESIDFIAVLGDASAQQRAVGEHVAFKPKKKSGEEEATYTGNLEDAETLKTWANDKANPLVREITFENGEELTEEGLPFLLLFHKPDDVTSIQRFKAAVTKELLQERGKMNFLLADGTTFSHPLHHLGKRIDDLPLLCIDSFRHMYLFKDFNEIDVPGKLKQFVADLHSGKLHQDFHNPPPEDKXXXXXXXXXXXXXXXDSTGAPPSEDSTGAPSADGQPTGAXXXXXXXXXXXXXXXXXXETVFNKLAPSENRYTLLHWRD 1456
L++ D+ +CS+LL + P V + L +E L+ V +NFYADWC FSQ L PIF +A+D++ EEF N V RVDC+Q DIA + +SKYPTLK++R+G +++EYRGQRSV A + +I+Q + ++ L ++ +D + +I YFE K S Y+ FE+VA+ L + F++ GD S +R G+++ +KP S + Y G + + + W DK PLVREITFENGEELTEEGLPFL+LFH +D S++ F+ V ++L+ E+G +NFL AD F HPL H+ K D P++ IDSFRHMY+F DF ++ +PGKLKQFV DLHSGKLH++FH+ P D T P E + S+ PPE+ F KLAPSE RYTLL RD
Sbjct: 7 LSLPDL-RCSLLLLVTWVFTP-VTTEITSLDTENIDEILNNADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQHSDIAQRYRISKYPTLKLFRNGMMMKREYRGQRSVKALADYIRQQKSDPIQEIRDLAEITTLDRSKRNIIGYFEQKDSDNYRVFERVANILHDDCAFLSAFGDVSKPERYSGDNIIYKPPGHSAPD-MVYLGAMTNFDVTYNWIQDKCVPLVREITFENGEELTEEGLPFLILFHMKEDTESLEIFQNEVARQLISEKGTINFLHADCDKFRHPLLHIQKTPADCPVIAIDSFRHMYVFGDFKDVLIPGKLKQFVFDLHSGKLHREFHHGP-------------------DPTDTAPGEQAQDVASS-----------------------PPESSFQKLAPSEYRYTLLRDRD 404 The following BLAST results are available for this feature:
BLAST of TCONS_00017307 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2026, MARIMBA.