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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017298 ID=TCONS_00017298|Name=TCONS_00017298|organism=Clytia hemisphaerica|type=transcript|length=2295bp
tcagctgaatgttttgaaaagcaTAACGTGTACCGAAGCAGACACAGAAT
GACAGATCCACTTTCATGGGATAATGCGTTGCAACGTTCTGCTCAATTGT
ATGCTGAGGAATTAGCACGAACGAAGAACTTCAAACATAGTAGTGATCTT
GCTGACAAAGGAGAGAATCTATACTATGGTTACAGTTCTGGTCGTGTGAC
CAAGGAAGGAAGATGTACGCGAGCACTAGACTTATGGTATGACGAGATCA
AGGATTATAACTTTTCAACTGGAAAGGGAACACCAGGCAAAATGATAGGA
CATTTCACACAAATGGTTTGGAAGGACTCAAAGAGGATCGGTATCGGAAT
GGCAATCAGTAGAGATCAAACTCATATCTATGTTGTGGCTCATTATGCTC
NAACTTTTCAACTGGAACGGGAACACCTGGCAAAATGATAGGACATTTCA
CGCAAATGGTTTGGAAGGACTCAAAGAGGATCGGTATCGGAATGGCAATC
AGTAGAGATCAAACTCATATCTATGTTGTGGCGCATTATGCTCCGAAAGG
GAATTATATTGGACAGTTCACTCAACAAGTTCAAAGATTAAAATGATTTC
CATCAAGTTCTGATGTAGCCACTAAATTCTGAAGACTGGAATTCGTGATA
TTCACGACGTAATGTTTTGTAAGGAATACCACTTAAAAAGACCGGGTGTT
TGTCgctatttttgaatttaaacagtGAAATTAGTGGAAAACGCCTGGGT
TATTTTTGGCGCTTCCCGtacaaaacattacgtcattaatATCACGAATG
GATTTCTCCATAGTAGTTTCTGGTAACCGTCAATTGTCTCAAAATGGCAG
CCGGAGCTGCAGAAACTGATGGAAATTTCGCCAGCCTGAAACCAGTCTTC
AAAGTTCAAATTTTCGTAACACTCAACCTTCTAatcgtattttaattatt
tttctaaatcaaGTGTATATTTTCGTAATAAAATCTAAAGTATAAGTTTC
TTTCTTAAATTACAAATAGCTTATCTATACGATACATATATCTATAATAT
AACCTTGCTCCTACCCATCCCGGgaggggggcactgaccttgacggacAA
CATGGACACTGTCAggacaaaaaattgaaagtcaaTTTCCACCCTAACAA
GTggcaaaatgactaaaagtagacgaaaaactgaaaaattttctcatttt
tttccctgaaaaattgtccaaataaccaaaagtggaccctgtcagatgca
catcttgaaaattagtagattttggaccctgtcagatatcttcagagcct
aaaaaagggaccctgatcaGCGGCATGTCCCGCGTACCCTATTTTCCCCC
CCCCNTGAATGACGGTGATGTGAGTTTGCCAAAGATTTCAAGTGTGTTGT
AAATAAAGTTGGATTCTTGTGACTATAATGCATTCTGGGAGTATTCTGTT
ACAATTCTCTTTACAAGAATTTGATGACAGCAAATAGAGATGAAAGTAAT
AAGAAAAGTGATGATGTCAGCATCGTTCCATTGTTTCCTGGTTTTGGAGT
TGGTCTCGGTTCTATGGgttgaaaaaacaaaatcattagATCTTCATTGA
TATATTTGGACCGCATatcttaatttgaaaatttattgtcTTTCTAGGTT
GTAGTAATCGAGTGATTGCGCTTGTCTTGcgctagactagcaaactatgT
CAAGTGGGcaggaacataaaggcggcgggcgtttgctagaataagAGCTA
CGTAGGAGAacaagcaaaagttggtgagaggctgctgctttcagcccttg
ccgccgacaaaatttcttcctagatcctacgcttacctaactcctacgct
cattTCCCcacgtgataccgttccagcccgactgctatctggtactcgat
gtagaaattttcttccgacacgctaaagctctgaaggtcgggaaaatttt
aacatctggaacctttgggttaccatttttcatttttNACTGCCACCATT
TCGTTCAGTATAAACGCCAACTTGGAATTCATATTCTGTACTGTTTCGCA
AACCACTGATAACCATCGGTGAGGATCCTGATTTCATCATTGTTGTACTG
TTGCCTTTAATGTTGTATCTGACGTAATTGACACCTTGATCGGCCGATAA
CCATGACAACGTGAGCGTATCAGCGTAAATTTCAGTATGCAAAGCAACAG
TAACATTATATGGAGCTTTTGGTGCtggaaattgttaaaaatactTTGAT
TATGTTTTGAAATTGATTGCACATATTTTTGTTCGAACATATAAA Run BLAST on NCBI protein sequence of TCONS_00017298-protein >TCONS_00017298-protein ID=TCONS_00017298-protein|Name=TCONS_00017298-protein|organism=Clytia hemisphaerica|type=polypeptide|length=145bp
SAECFEKHNVYRSRHRMTDPLSWDNALQRSAQLYAEELARTKNFKHSSDL
ADKGENLYYGYSSGRVTKEGRCTRALDLWYDEIKDYNFSTGKGTPGKMIG
HFTQMVWKDSKRIGIGMAISRDQTHIYVVAHYAXTFQLEREHLAK Run BLAST on NCBI transcript from alignment at sc0000264:87907..90910- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017298 ID=TCONS_00017298|Name=TCONS_00017298|organism=Clytia hemisphaerica|type=transcript|length=3004bp|location=Sequence derived from alignment at sc0000264:87907..90910- (Clytia hemisphaerica)
TCAGCTGAATGTTTTGAAAAGCATAACGTGTACCGAAGCAGACACAGAAT
GACAGATCCACTTTCATGGGATAATGCGTTGCAACGTTCTGCTCAATTGT
ATGCTGAGGAATTAGCACGAACGAAGAACTTCAAACATAGTAGTGATCTT
GCTGACAAAGGAGAGAATCTATACTATGGTTACAGTTCTGGTCGTGTGAC
CAAGGAAGGAAGATGTACGCGAGCACTAGACTTATGGTTAGTATCGCCTG
CACCAGTATGCTCCTAATTTTTTGGTCCGTATTTATGATGTAGAGTATAA
ATTTATCCTGTTGGAATGGGAAGTCAACGTTTTCCTTTGGGAGCTGTGGT
TATAAGGTACATCTCACTTGGGAAAAATCCTTCTAATTTTTTTTTTACAC
CAAGTTTTTTTGTGCTAGGGGATTGTACTATGGCTGCCGTAGTGTGTAGT
TATCATCTATTTTGGCTCTTGCGGTTGGGGTTAGACTTAGTGCTTTAGAT
GTGACGATACGCTTGCCAAGTGAATGCGTTTTCGTCTGAGCCGACACATG
CCCTACACCAGGCTATTGGCAGCTTTGTCGGTCACACACCTCTAGTCCAT
CTAAGTGGAGGACTTGTGTTCTTAGTGGACGAGTCCGGCTGTACAGATCT
CGAAGTGATTTCGACAGGATAGCTATCATGCTATAATGCACCATCATATA
TTTTACGAATAAGACAAATCCCCGGAAAAATCTTGATTTTTTTTGCTCGA
AAAGGGTTTAAAATTTGAAAAAATGCACTGTAAGGGTATGAATTTCACCG
ATTTTTTTCTGCACTATAAGGGTGCGATTCTAAAAGCCATTTTTTTCGCC
GCACATACCGTCAGTTGGTAAACCCACTGTCCCCCCCCCCCGGGGCAAAA
CTTACTATATAAACTTCATTTCAAAAATTTGCAAACTTTCCATAGGTATG
ACGAGATCAAGGATTATAACTTTTCAACTGGAAAGGGAACACCAGGCAAA
ATGATAGGACATTTCACACAAATGGTTTGGAAGGACTCAAAGAGGATCGG
TATCGGAATGGCAATCAGTAGAGATCAAACTCATATCTATGTTGTGGCTC
ATTATGCTCNAACTTTTCAACTGGAACGGGAACACCTGGCAAAATGATAG
GACATTTCACGCAAATGGTTTGGAAGGACTCAAAGAGGATCGGTATCGGA
ATGGCAATCAGTAGAGATCAAACTCATATCTATGTTGTGGCGCATTATGC
TCCGAAAGGGAATTATATTGGACAGTTCACTCAACAAGTTCAAAGATTAA
AATGATTTCCATCAAGTTCTGATGTAGCCACTAAATTCTGAAGACTGGAA
TTCGTGATATTCACGACGTAATGTTTTGTAAGGAATACCACTTAAAAAGA
CCGGGTGTTTGTCGCTATTTTTGAATTTAAACAGTGAAATTAGTGGAAAA
CGCCTGGGTTATTTTTGGCGCTTCCCGTACAAAACATTACGTCATTAATA
TCACGAATGGATTTCTCCATAGTAGTTTCTGGTAACCGTCAATTGTCTCA
AAATGGCAGCCGGAGCTGCAGAAACTGATGGAAATTTCGCCAGCCTGAAA
CCAGTCTTCAAAGTTCAAATTTTCGTAACACTCAACCTTCTAATCGTATT
TTAATTATTTTTCTAAATCAAGTGTATATTTTCGTAATAAAATCTAAAGT
ATAAGTTTCTTTCTTAAATTACAAATAGCTTATCTATACGATACATATAT
CTATAATATAACCTTGCTCCTACCCATCCCGGGAGGGGGGCACTGACCTT
GACGGACAACATGGACACTGTCAGGACAAAAAATTGAAAGTCAATTTCCA
CCCTAACAAGTGGCAAAATGACTAAAAGTAGACGAAAAACTGAAAAATTT
TCTCATTTTTTTCCCTGAAAAATTGTCCAAATAACCAAAAGTGGACCCTG
TCAGATGCACATCTTGAAAATTAGTAGATTTTGGACCCTGTCAGATATCT
TCAGAGCCTAAAAAAGGGACCCTGATCAGCGGCATGTCCCGCGTACCCTA
TTTTCCCCCCCCCNTGAATGACGGTGATGTGAGTTTGCCAAAGATTTCAA
GTGTGTTGTAAATAAAGTTGGATTCTTGTGACTATAATGCATTCTGGGAG
TATTCTGTTACAATTCTCTTTACAAGAATTTGATGACAGCAAATAGAGAT
GAAAGTAATAAGAAAAGTGATGATGTCAGCATCGTTCCATTGTTTCCTGG
TTTTGGAGTTGGTCTCGGTTCTATGGGTTGAAAAAACAAAATCATTAGAT
CTTCATTGATATATTTGGACCGCATATCTTAATTTGAAAATTTATTGTCT
TTCTAGGTTGTAGTAATCGAGTGATTGCGCTTGTCTTGCGCTAGACTAGC
AAACTATGTCAAGTGGGCAGGAACATAAAGGCGGCGGGCGTTTGCTAGAA
TAAGAGCTACGTAGGAGAACAAGCAAAAGTTGGTGAGAGGCTGCTGCTTT
CAGCCCTTGCCGCCGACAAAATTTCTTCCTAGATCCTACGCTTACCTAAC
TCCTACGCTCATTTCCCCACGTGATACCGTTCCAGCCCGACTGCTATCTG
GTACTCGATGTAGAAATTTTCTTCCGACACGCTAAAGCTCTGAAGGTCGG
GAAAATTTTAACATCTGGAACCTTTGGGTTACCATTTTTCATTTTTNACT
GCCACCATTTCGTTCAGTATAAACGCCAACTTGGAATTCATATTCTGTAC
TGTTTCGCAAACCACTGATAACCATCGGTGAGGATCCTGATTTCATCATT
GTTGTACTGTTGCCTTTAATGTTGTATCTGACGTAATTGACACCTTGATC
GGCCGATAACCATGACAACGTGAGCGTATCAGCGTAAATTTCAGTATGCA
AAGCAACAGTAACATTATATGGAGCTTTTGGTGCTGGAAATTGTTAAAAA
TACTTTGATTATGTTTTGAAATTGATTGCACATATTTTTGTTCGAACATA
TAAA Coding sequence (CDS) from alignment at sc0000264:87907..90910- >TCONS_00017298 ID=TCONS_00017298|Name=TCONS_00017298|organism=Clytia hemisphaerica|type=CDS|length=876bp|location=Sequence derived from alignment at sc0000264:87907..90910- (Clytia hemisphaerica)
GTATGACGAGATCAAGGATTATAACTTTTCAACTGGAAAGGGAACACCAG
GCAAAATGATAGGACATTTCACACAAATGGTTTGGAAGGACTCAAAGAGG
ATCGGTATCGGAATGGCAATCAGTAGAGATCAAACTCATATCTATGTTGT
GGCTCATTATGCTCNAACTTTTCAACTGGAACGGGAACACCTGGCAAAAT
GATCAGCTGAATGTTTTGAAAAGCATAACGTGTACCGAAGCAGACACAGA
ATGACAGATCCACTTTCATGGGATAATGCGTTGCAACGTTCTGCTCAATT
GTATGCTGAGGAATTAGCACGAACGAAGAACTTCAAACATAGTAGTGATC
TTGCTGACAAAGGAGAGAATCTATACTATGGTTACAGTTCTGGTCGTGTG
ACCAAGGAAGGAAGATGTACGCGAGCACTAGACTTATGGTATGACGAGAT
CAAGGATTATAACTTTTCAACTGGAAAGGGAACACCAGGCAAAATGATAG
GACATTTCACACAAATGGTTTGGAAGGACTCAAAGAGGATCGGTATCGGA
ATGGCAATCAGTAGAGATCAAACTCATATCTATGTTGTGGCTCATTATGC
TCNAACTTTTCAACTGGAACGGGAACACCTGGCAAAATGATCAGCTGAAT
GTTTTGAAAAGCATAACGTGTACCGAAGCAGACACAGAATGACAGATCCA
CTTTCATGGGATAATGCGTTGCAACGTTCTGCTCAATTGTATGCTGAGGA
ATTAGCACGAACGAAGAACTTCAAACATAGTAGTGATCTTGCTGACAAAG
GAGAGAATCTATACTATGGTTACAGTTCTGGTCGTGTGACCAAGGAAGGA
AGATGTACGCGAGCACTAGACTTATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017298-exon-sc0000264-1575043694:90675..90910 | TCONS_00017298-exon-sc0000264-1575043694:90675..90910 | Clytia hemisphaerica | exon |
| TCONS_00017298-exon-sc0000264-1575043694:87907..89965 | TCONS_00017298-exon-sc0000264-1575043694:87907..89965 | Clytia hemisphaerica | exon |
| TCONS_00017298-exon-sc0000264-1510915933:90675..90910 | TCONS_00017298-exon-sc0000264-1510915933:90675..90910 | Clytia hemisphaerica | exon |
| TCONS_00017298-exon-sc0000264-1510915933:87907..89965 | TCONS_00017298-exon-sc0000264-1510915933:87907..89965 | Clytia hemisphaerica | exon |
| TCONS_00017298-exon-sc0000264-1491911889:90675..90910 | TCONS_00017298-exon-sc0000264-1491911889:90675..90910 | Clytia hemisphaerica | exon |
| TCONS_00017298-exon-sc0000264-1491911889:87907..89965 | TCONS_00017298-exon-sc0000264-1491911889:87907..89965 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000264 | supercontig | sc0000264:87907..90910 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005576 | extracellular region |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0005576 |
extracellular region |
Blast
BLAST of TCONS_00017298 vs. Swiss-Prot (Human)
Match: GAPR1 (Golgi-associated plant pathogenesis-related protein 1 OS=Homo sapiens GN=GLIPR2 PE=1 SV=3) HSP 1 Score: 83.5741 bits (205), Expect = 4.193e-18 Identity = 56/132 (42.42%), Postives = 72/132 (54.55%), Query Frame = 1
Query: 7 ECFEKHNVYRSRHRMTDPLSWDNALQRSAQLYAEELARTKNFKHS--SDLADKGENLYYGYSSGRVTKEGRCTRALDLWYDEIKDYNFSTGKGTPGKMIGHFTQMVWKDSKRIGIGMAISRDQTHIYVVAHY 396
E + HN YR +H + PL L R AQ Y+E LA T+ KHS S GENL + S + KE D WY EIK+YNF T G GHFT MVWK++K++G+G A + D + +VVA Y
Sbjct: 12 EVLKAHNEYRQKHGVP-PLKLCKNLNREAQQYSEALASTRILKHSPESSRGQCGENLAWA-SYDQTGKE-----VADRWYSEIKNYNFQQPGFTSG--TGHFTAMVWKNTKKMGVGKASASDGSS-FVVARY 133
The following BLAST results are available for this feature:
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