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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017284 ID=TCONS_00017284|Name=TCONS_00017284|organism=Clytia hemisphaerica|type=transcript|length=2452bp
AACTGTTCAGTGAGGACTGTAGACTTTAGTCAAGAAAGGAAAAGTTCAAG
ATTtcagcaaaaatgaaaaaaacaaaaacagcatTTTTAACCAACCTCAT
TTCCATCTTTCTTACATTACGTCATTGTTCTTACGTCAACTCAACATCTC
CGGCGCCATTATGTTTCTTACGTGCTGGACGTGAAATCATATTCCGGTTC
AAAAGACCTTCTAACGTTCTCGCAAGTCAAAGTAAAGACATCTTTCTACA
ATGGACAAACATCAATGGCAAAGTCACCGAGACAAAATCATGTTTCTATT
CGACAAAGGTAGATCAATTCTTTTGCCCGACTCCGTTGAGTGTTTATGAC
AAAGACTTGTTGAAACAAAGAATTTCTAGTTTAAAGGCTGTCGATAGATC
GAAAAAAGTGACAGTTTTGACACACCCTCAAGCTTTTGTTCCTTCCCAAC
ACCTTTTCGATTGCATATCAAACCACGATGCTCGAGATATACGATTCAAG
GAATCTGACACAAATAAATGGGTTTTATCTTGGAGAAAATCATCTTTATC
GAAATGTTTTAATCCCTCATATGAAGTAACAGTAACTGGATCAAATCAAG
CCTCGCCAATAATCACaaccaaaatcacaaaatgtaaacaacCAAATGGC
AGATGCGAAATAACACTTCCAGACGACGTACGAAAAGATGGCACCCTCAA
AACAGTCTGTATAACGTCAATATTCTCATTAACTTTAAAGAACTATTATA
CCATCACTACAAAAAGATCGGAGTTGTGCACAGTATCAGAATTCAGTTCT
AAATACCGTTTGAAAGTCGTGAACACCAAAACAGGAAAAGTCGTCGAGGA
TTATGGGATTTGGCACCATCCATTAGGCGGTGACAACTTGAACAAAACGA
CCCTGCAGGAAattaaaaagacaaaacaaaaagTCATGACAAATtggaag
tttttgaaaaatgcaaaacaaCCACAAAATAGCAGATAGGATCGAGAGTG
ATTGACAATTTTGTGAAACACTTGATTCAGTTTACTGTATTGTTGCACGA
GAATGAAAGCACAAGAGCACAAAATTTTGATNCCAAATGGCAGATGCGAA
ATAACACTTCCAGACGACGTACGAAAAGATGGCACCCTCAAAACAGTCTG
TATAACGTCAATATTCTCATTAACTTTAAAGAACTATTATACCATCACTA
CAAAAAGATCGGAGTTGTGCACAGTATCAGAATTCAGTTCTAAATACCGT
TTGAAAGTCGTGAACACCAAAACAGGAAAAGTCGTCGAGGATTATGGGAT
ATGGCACCATCCATTAGGCGGTGGCAACTTGAACAAAACGACCCTGCAGG
AAattaaaaagacaaaacaaaaagTCGTGACAAATtggaagtttttgaaa
aatgcaaaacaaCCACAAAATAGCAGATAGGATCGAGAGtgattgacaat
ttcatgaaaCACTTGATCCAGTTTACTGTATTGTTGCACGAGAATGAAAG
CACAAGAGCACAAATTTTTGAGATATAACTTACTATATCCTACAGTCagt
tcaaaaaacattttgagaatttcggatattttcaacgtttttcagaattt
aaagttcggttGAGAACGGTGATTTCAGTACTTCCGCTATATTTCATtag
atattttgatttaatGGTTTAGTGGCCTCGGCTTCATTGGgatatttttt
gagcttttgaatCCCAATATCCTAAGGTCTTCTTCCTTCCTAAGTCTAAT
GTATGATCTTAAGAGTTGAAGCTCTACATATTCCAGCATTAACTtagagc
acttaaaaatcatttgtagtttttaaaattttgcagggaattcccctttt
aaTCAAATATTATGTATGACTTTGATTGCACTAGTCACTAGTTTATTTTA
TATACATAAAAAGACCAGTTATTAATATTTATATATTTGACTTCGGAGGA
CAGTCTTGCTCGCAGATCCCCTCTTTcattacaaaaaaacatttgaaacc
aAATTCGttaaaattcgagaaaaaaatcacaTTATACCACAAAATTAGTC
TACCAATGACCTTTTGAACTCTCCAAGTGAAGTGTGTTGCTCTGTAATAT
CGTATCATGTGACggcattctttcaaaatattttgacacAATCCAACGAG
CAAGAAAAATGATACCATCAAACGAAGTATGATCTCAAATCCTTACACGA
AGCACTTGTTTTCCTACTTTTAGTCAATTTACTTTTGTAATCTGTAATAA
AATCCACGCTTAATATAGACTGTATGTAATACAAATGGTTTTGAACTGTA
TGTAAAAATTGTAATTCTTGTCGTACGCTACGTTTCAAACCAAAACAACA
ACATCTTCGTTTATTGAGTCTTCTTTCGATGTGAATCTCAATTCGATAGA
TGACATCGGATAATTGCAAATCGATGTGTCGATCTCGTTCTTCCATACAT
TT Run BLAST on NCBI protein sequence of TCONS_00017284-protein >TCONS_00017284-protein ID=TCONS_00017284-protein|Name=TCONS_00017284-protein|organism=Clytia hemisphaerica|type=polypeptide|length=308bp
MKKTKTAFLTNLISIFLTLRHCSYVNSTSPAPLCFLRAGREIIFRFKRPS
NVLASQSKDIFLQWTNINGKVTETKSCFYSTKVDQFFCPTPLSVYDKDLL
KQRISSLKAVDRSKKVTVLTHPQAFVPSQHLFDCISNHDARDIRFKESDT
NKWVLSWRKSSLSKCFNPSYEVTVTGSNQASPIITTKITKCKQPNGRCEI
TLPDDVRKDGTLKTVCITSIFSLTLKNYYTITTKRSELCTVSEFSSKYRL
KVVNTKTGKVVEDYGIWHHPLGGDNLNKTTLQEIKKTKQKVMTNWKFLKN
AKQPQNSR Run BLAST on NCBI transcript from alignment at sc0000264:307676..310241+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017284 ID=TCONS_00017284|Name=TCONS_00017284|organism=Clytia hemisphaerica|type=transcript|length=2566bp|location=Sequence derived from alignment at sc0000264:307676..310241+ (Clytia hemisphaerica)
AACTGTTCAGTGAGGACTGTAGACTTTAGTCAAGAAAGGAAAAGTTCAAG
GTAAACTACACAATCAGTTGTTATTTCAGTTTAATTTGCATTTCTAAGGT
TCTTAGGGAAATTCCGGAAATAATCTGAATAATGGTTTCCTTTTCTATCA
AATTTTTCTTCTAGATTtcagcaaaaatgaaaaaaacaaaaacagcatTT
TTAACCAACCTCATTTCCATCTTTCTTACATTACGTCATTGTTCTTACGT
CAACTCAACATCTCCGGCGCCATTATGTTTCTTACGTGCTGGACGTGAAA
TCATATTCCGGTTCAAAAGACCTTCTAACGTTCTCGCAAGTCAAAGTAAA
GACATCTTTCTACAATGGACAAACATCAATGGCAAAGTCACCGAGACAAA
ATCATGTTTCTATTCGACAAAGGTAGATCAATTCTTTTGCCCGACTCCGT
TGAGTGTTTATGACAAAGACTTGTTGAAACAAAGAATTTCTAGTTTAAAG
GCTGTCGATAGATCGAAAAAAGTGACAGTTTTGACACACCCTCAAGCTTT
TGTTCCTTCCCAACACCTTTTCGATTGCATATCAAACCACGATGCTCGAG
ATATACGATTCAAGGAATCTGACACAAATAAATGGGTTTTATCTTGGAGA
AAATCATCTTTATCGAAATGTTTTAATCCCTCATATGAAGTAACAGTAAC
TGGATCAAATCAAGCCTCGCCAATAATCACaaccaaaatcacaaaatgta
aacaacCAAATGGCAGATGCGAAATAACACTTCCAGACGACGTACGAAAA
GATGGCACCCTCAAAACAGTCTGTATAACGTCAATATTCTCATTAACTTT
AAAGAACTATTATACCATCACTACAAAAAGATCGGAGTTGTGCACAGTAT
CAGAATTCAGTTCTAAATACCGTTTGAAAGTCGTGAACACCAAAACAGGA
AAAGTCGTCGAGGATTATGGGATTTGGCACCATCCATTAGGCGGTGACAA
CTTGAACAAAACGACCCTGCAGGAAattaaaaagacaaaacaaaaagTCA
TGACAAATtggaagtttttgaaaaatgcaaaacaaCCACAAAATAGCAGA
TAGGATCGAGAGTGATTGACAATTTTGTGAAACACTTGATTCAGTTTACT
GTATTGTTGCACGAGAATGAAAGCACAAGAGCACAAAATTTTGATNCCAA
ATGGCAGATGCGAAATAACACTTCCAGACGACGTACGAAAAGATGGCACC
CTCAAAACAGTCTGTATAACGTCAATATTCTCATTAACTTTAAAGAACTA
TTATACCATCACTACAAAAAGATCGGAGTTGTGCACAGTATCAGAATTCA
GTTCTAAATACCGTTTGAAAGTCGTGAACACCAAAACAGGAAAAGTCGTC
GAGGATTATGGGATATGGCACCATCCATTAGGCGGTGGCAACTTGAACAA
AACGACCCTGCAGGAAattaaaaagacaaaacaaaaagTCGTGACAAATt
ggaagtttttgaaaaatgcaaaacaaCCACAAAATAGCAGATAGGATCGA
GAGtgattgacaatttcatgaaaCACTTGATCCAGTTTACTGTATTGTTG
CACGAGAATGAAAGCACAAGAGCACAAATTTTTGAGATATAACTTACTAT
ATCCTACAGTCagttcaaaaaacattttgagaatttcggatattttcaac
gtttttcagaatttaaagttcggttGAGAACGGTGATTTCAGTACTTCCG
CTATATTTCATtagatattttgatttaatGGTTTAGTGGCCTCGGCTTCA
TTGGgatattttttgagcttttgaatCCCAATATCCTAAGGTCTTCTTCC
TTCCTAAGTCTAATGTATGATCTTAAGAGTTGAAGCTCTACATATTCCAG
CATTAACTtagagcacttaaaaatcatttgtagtttttaaaattttgcag
ggaattccccttttaaTCAAATATTATGTATGACTTTGATTGCACTAGTC
ACTAGTTTATTTTATATACATAAAAAGACCAGTTATTAATATTTATATAT
TTGACTTCGGAGGACAGTCTTGCTCGCAGATCCCCTCTTTcattacaaaa
aaacatttgaaaccaAATTCGttaaaattcgagaaaaaaatcacaTTATA
CCACAAAATTAGTCTACCAATGACCTTTTGAACTCTCCAAGTGAAGTGTG
TTGCTCTGTAATATCGTATCATGTGACggcattctttcaaaatattttga
cacAATCCAACGAGCAAGAAAAATGATACCATCAAACGAAGTATGATCTC
AAATCCTTACACGAAGCACTTGTTTTCCTACTTTTAGTCAATTTACTTTT
GTAATCTGTAATAAAATCCACGCTTAATATAGACTGTATGTAATACAAAT
GGTTTTGAACTGTATGTAAAAATTGTAATTCTTGTCGTACGCTACGTTTC
AAACCAAAACAACAACATCTTCGTTTATTGAGTCTTCTTTCGATGTGAAT
CTCAATTCGATAGATGACATCGGATAATTGCAAATCGATGTGTCGATCTC
GTTCTTCCATACATTT Coding sequence (CDS) from alignment at sc0000264:307676..310241+ >TCONS_00017284 ID=TCONS_00017284|Name=TCONS_00017284|organism=Clytia hemisphaerica|type=CDS|length=927bp|location=Sequence derived from alignment at sc0000264:307676..310241+ (Clytia hemisphaerica)
atgaaaaaaacaaaaacagcatTTTTAACCAACCTCATTTCCATCTTTCT
TACATTACGTCATTGTTCTTACGTCAACTCAACATCTCCGGCGCCATTAT
GTTTCTTACGTGCTGGACGTGAAATCATATTCCGGTTCAAAAGACCTTCT
AACGTTCTCGCAAGTCAAAGTAAAGACATCTTTCTACAATGGACAAACAT
CAATGGCAAAGTCACCGAGACAAAATCATGTTTCTATTCGACAAAGGTAG
ATCAATTCTTTTGCCCGACTCCGTTGAGTGTTTATGACAAAGACTTGTTG
AAACAAAGAATTTCTAGTTTAAAGGCTGTCGATAGATCGAAAAAAGTGAC
AGTTTTGACACACCCTCAAGCTTTTGTTCCTTCCCAACACCTTTTCGATT
GCATATCAAACCACGATGCTCGAGATATACGATTCAAGGAATCTGACACA
AATAAATGGGTTTTATCTTGGAGAAAATCATCTTTATCGAAATGTTTTAA
TCCCTCATATGAAGTAACAGTAACTGGATCAAATCAAGCCTCGCCAATAA
TCACaaccaaaatcacaaaatgtaaacaacCAAATGGCAGATGCGAAATA
ACACTTCCAGACGACGTACGAAAAGATGGCACCCTCAAAACAGTCTGTAT
AACGTCAATATTCTCATTAACTTTAAAGAACTATTATACCATCACTACAA
AAAGATCGGAGTTGTGCACAGTATCAGAATTCAGTTCTAAATACCGTTTG
AAAGTCGTGAACACCAAAACAGGAAAAGTCGTCGAGGATTATGGGATTTG
GCACCATCCATTAGGCGGTGACAACTTGAACAAAACGACCCTGCAGGAAa
ttaaaaagacaaaacaaaaagTCATGACAAATtggaagtttttgaaaaat
gcaaaacaaCCACAAAATAGCAGATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017284-exon-sc0000264-1491911889:307676..307725 | TCONS_00017284-exon-sc0000264-1491911889:307676..307725 | Clytia hemisphaerica | exon |
| TCONS_00017284-exon-sc0000264-1510915933:307676..307725 | TCONS_00017284-exon-sc0000264-1510915933:307676..307725 | Clytia hemisphaerica | exon |
| TCONS_00017284-exon-sc0000264-1575043694:307676..307725 | TCONS_00017284-exon-sc0000264-1575043694:307676..307725 | Clytia hemisphaerica | exon |
| TCONS_00017284-exon-sc0000264-1491911889:307840..310241 | TCONS_00017284-exon-sc0000264-1491911889:307840..310241 | Clytia hemisphaerica | exon |
| TCONS_00017284-exon-sc0000264-1510915933:307840..310241 | TCONS_00017284-exon-sc0000264-1510915933:307840..310241 | Clytia hemisphaerica | exon |
| TCONS_00017284-exon-sc0000264-1575043694:307840..310241 | TCONS_00017284-exon-sc0000264-1575043694:307840..310241 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000264 | supercontig | sc0000264:307676..310241 + |
Blast
The following BLAST results are available for this feature:
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