TCONS_00017282 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017282
Unique NameTCONS_00017282
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2002

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017282 ID=TCONS_00017282|Name=TCONS_00017282|organism=Clytia hemisphaerica|type=transcript|length=2002bp
ATTCGTGAAGCATTTATTGGCGGTACAGGATccatatttttcagcatttt
cagtggatttttcatcgattgttgccattctttttcattcattcgCAAGA
GCGAAGAGCGATTATGGTGATGCCAAAACTTGACATCGTTTGATCTCCAA
AAaaacaattcttaaaaaaaatgaccACCACAGAAACCACTCAGAAGCCT
ACTGCTGCCTCATCTCAAAATCCAAAAGATGCTATTGAAAGAGTTGTTAT
CCACCCATTGGTGCTGCTTAGTGTTGTCGATCATTTTAACAGAATGTCAA
AAGTTGGTAACCAGCGCCGTGTAGCTGGTATTCTTTTGGGGTCAATACGT
AATAAAGTTTTGGATGTGGCAAATAGTTTTGCCATACCATTTGATGAAGA
TGATAGAGATCCATCTGTATGGTATCTTGATCATGACTATTTGGATAACA
TGGCTGCTATGTTCAAAAAAGTTAATGCTAAAGAACGTGTCATCGGTTGG
TACCATACTGGACCTAAACTTCATCCCAACGATATTCGTATCAATGAGCT
TGTCAGGAGATTCAATCCAAATTCAGTTCTGGTCATCATCGATGCTAAAC
CCAAAGAACTAGGACTTCCAACTGAAGCATACATTGCTATTGAAGAAGTG
CACGATGACGGTACGCCAACATCGAAAACGTTCGAACACATTCCGAGTGA
AATCGGTGCCGAAGAAGCTGAAGAAGTCGGTGTTGAACATCTCCTCAGGG
ACATTCGAAACGTTACAGTGGGTACCCTCTCACAGCGTATCACTAACCAA
GTGTCGTCACTTAAAGGACTACACGCTCACTTGCAAGACATTCATACGTA
CTTAGAGCAAGTCATCAGCGGTAAACTACCTGTCAATCATACCATCATGT
ACCATCTGCAAGATATTTTCAATCTGTTACCCAACCTCAACGTTGAGGAA
TTCATTAAATCAATTACGGTGATGACCAACGATCAAATGGTAGTTATTTA
TTTAGCATCCGTCGTACGTACAGTCATTGCACTCCACAATCTCATTAATA
ACAAACTACAAAATAAGGACTTAGAACGGGAAAAAGAAGAAGGCAAGAAA
GATAAAGATGCAACAAAGGCTGATAAGgatgagaaaaaagataaaaagga
CTCCTCGAAAGATGACAAATCTACAACGGATAAGAAAGAATCGACCACCA
AGAAATAAATGTTGAGATGTTGTTATTTTTACTCATTAGGTTttgaattt
tgtgaaaaaagggATTTCAGTGACTTTTCCGAACTGGTATTGTTCATAGA
ATGTTATTCTCATATTACAACTGATatatttaaatcatgttttggAAATG
GCTAATCCACGGTAATCTCTGGATAGACGATTCTTTATCGTAACAAAGTT
ACTGACAATTTAATATTAGTATACTAATCTGATATTCCAACTCACCACTT
CctcaaaatccaaattttagATATTCGGCCCCCAGATTTTCTTAttgatt
tcaaaacttttcgtTTTCAAATTCTACCAACAATGAAATGCCAAAAGATT
TTGAAAGCACGTAAGAAGATATTGAACATCTCAGGATAAACTGTTAAGGT
TGGAGAGACATCTTGCCTtcgtttgttttttaaatcaaatgcAATATTTC
CACAATTATTGTAACTTATTAACCAACGACCAATATCGGATTGAAATGTT
GAACTTCCActaatgttttgaaagtttttaactACAGGAATTTTAAGCTT
CTTCATTTTCCGTAGGAtatttttgttatgaatttCAACATAgatcattt
ttttgaatttgcaaATATGTTATAAACTGTTTGTATATTTTCTGTGTTTG
TTTTCTCCCCTTCTTCTTTGCTGTTTAGGGGTTTTTCTGGACATTTTGAG
GATTATTTGCATTGCCTGCCCAGTTATTATGCGTAAAATCCTGTCACTTA
TCAGcgcttatttttgttttgtcaaaAAGCCATCTTTTGACCAATACGAT
GC
Run BLAST on NCBI

protein sequence of TCONS_00017282-protein

>TCONS_00017282-protein ID=TCONS_00017282-protein|Name=TCONS_00017282-protein|organism=Clytia hemisphaerica|type=polypeptide|length=345bp
MTTTETTQKPTAASSQNPKDAIERVVIHPLVLLSVVDHFNRMSKVGNQRR
VAGILLGSIRNKVLDVANSFAIPFDEDDRDPSVWYLDHDYLDNMAAMFKK
VNAKERVIGWYHTGPKLHPNDIRINELVRRFNPNSVLVIIDAKPKELGLP
TEAYIAIEEVHDDGTPTSKTFEHIPSEIGAEEAEEVGVEHLLRDIRNVTV
GTLSQRITNQVSSLKGLHAHLQDIHTYLEQVISGKLPVNHTIMYHLQDIF
NLLPNLNVEEFIKSITVMTNDQMVVIYLASVVRTVIALHNLINNKLQNKD
LEREKEEGKKDKDATKADKDEKKDKKDSSKDDKSTTDKKESTTKK
Run BLAST on NCBI

transcript from alignment at sc0000264:293447..297457+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017282 ID=TCONS_00017282|Name=TCONS_00017282|organism=Clytia hemisphaerica|type=transcript|length=4011bp|location=Sequence derived from alignment at sc0000264:293447..297457+ (Clytia hemisphaerica)
ATTCGTGAAGCATTTATTGGCGGTACAGGATccatatttttcagcatttt
cagtggatttttcatcgattgttgccattctttttcattcattcgCAAGA
GCGAAGAGCGATTATGGTGATGCCAAAACTTGACATCGTTTGATCTCCAA
AGTAATCATATTTTTGAAACCCAGAACTCCTTAAAAACCGCTGTTAACAT
CCCAAAACTAGCCTAAAACAGttcttttcctttttgtgcTGTATTTCACC
CGgtagattttcatgattttttgcacaacgaAGCAAAAGAGAAAACTTTG
GTCACCAGTTTTGTTCAGGATTTTCTCAAATCTTATCCttactttttcct
gattttttgttgatttttctgttgattagccaggtaggtccataaaagta
tcacttgtttgttTGTTCATGAGGTGTGTTGTTTTGTATTTCACAGCACC
TAGAACAGATATTATTTCTGTCATTTAAATTGTTATTTTCTACTGAATTA
TCCTGTGAATTCGTTTTTAGAaaacaattcttaaaaaaaatgaccACCAC
AGAAACCACTCAGAAGCCTACTGCTGCCTCATCTCAAAATCCAAAAGATG
CTATTGAAAGAGTTGTTATCCACCCATTGGTGCTGCTTAGTGTTGTCGAT
CATTTTAACAGAATGTCAAAAGTTGGTAACCAGCGCCGTGTAGCTGGTAT
TCTTTTGGGGTCAATACGTAATAAAGTTTTGGATGTGGCAAATAGTTTTG
CCAGTAAGTATGGTCTTTATAggatttctttttcattcaatttcaaTCAC
TTTCAGAAAGTTTTTGGGCCACCAACAAAATTCTCAATCCATATANTCAA
TTTCAATCACTTTCAGAAAGTTTTTGGGCCACCAACAAAATTCTCAATAC
ATATTTCACATAGCCTCAGCCCCCGCTGGGGGGTTGGACTTAAAAATcag
gggacctaatttttgcctgggacctaaacccagacTGACGCTATGTATCG
TTGAACATAACACATCAGTCAGACGTTTGGTGTAAATACCATTTATTAAA
TGTTATAGATTAGTTGAAGATGTTGAAATTCACTAACagattttttcctt
ttcttagTACCATTTGATGAAGATGATAGAGATCCATCTGTATGGTATCT
TGATCATGACTATTTGGATAACATGGCTGCTATGTTCAAAAAAGTTAATG
GTGAGAACATAATGTTTTTTCAACTGGATCAAATCCAAACTAGATTTATC
CAAACAAATTCAACTGCtagaaattttatttacaaTTGCCATAATACCTT
ACCATATTGATACTTGCgatattttaaaataataacatccaagagataaa
aagaaaggttaaGATAAGAACATGGTTTAGCCTTTAAGTACACATTTtct
ttatattatatttatctTATCGATTCATTTAGCTAAAGAACGTGTCATCG
GTTGGTACCATACTGGACCTAAACTTCATCCCAACGATATTCGTATCAAT
GAGCTTGTCAGGAGATTCAATCCAAATTCAGTAAGGCTTActattaaaaa
aagaaacaattttaaACTACCCTTTTGCGAATTTGAGGTCTCAGTTACAA
ACtaatagcttgttttttaaaAGGATTGACCTTCTTCATTAACTGGGGGT
TATGGAAAAAGAGGtaaagctctagtttagacggctgactttctgccctg
cctattcaaATTGTCAGTAAGCAGAGAATGGGCaaaaagttggcagttaa
aatttTACTTGAATAAGATTGAaggaagtcattgcattgacatcaaaaga
gggcaatacattgactttagacagcccactttatgcctacttttaaattc
aaaattagaatagacagggcgaaaagtgggccgtctaaactagagctaac
aAATTTTATGATTATATTATATGGAAGTGATTACTGTGTTTATAACGATT
CTTAAAAAATTGAGGTACTCGCTTgtattttcaatcatttttgttaATGT
TTAGGTTCTGGTCATCATCGATGCTAAACCCAAAGAACTAGGACTTCCAA
CTGAAGCATACATTGCTATTGAAGAAGTGCACGATGTAAGTGGATCCTTT
CTTTCGTTTTCGTGTTCTTTTTCTCGTAATCTAAGTGCCTCTTATTCCTT
CTACATTAGATGAACAGTTGTTCTCTGTTATTAATATTATAACTTCACTA
TAAATTCCATTATTCGTTAACCTTCCACAATTTGATATGGAGCTTCTTCT
ATGGGTGCTCTCAAATGGTGTATAGGTCATGGCACCTCTAGTTCCCTTTT
CTGCGTATACAGTCCACGATCAGTGTAATCGGACCAAACTTCGATTAAAT
ATTAGCCCTGTTTTGTATGATCTCGAAAATATAACAATGTCAGGATTTAG
GAAATTCATTGCTAGACGATAACGACCTGCCATAACCACCAGCAGTAGTA
CTGACTATTAGTTATCTTCTTTTCTTCACAACAGGACGGTACGCCAACAT
CGAAAACGTTCGAACACATTCCGAGTGAAATCGGTGCCGAAGAAGCTGAA
GAAGTCGGTGTTGAACATCTCCTCAGGTAACGatactattcaaattttta
aaactcaattttaTATGTCATATTTTCTTGGCTTGGTATCGAGCACTATG
GTGGCTTTGGTTTTTCTAGGGTTTACTGTAAGGGTTACTGTAGTAGGACA
AgtaaaaaacttgagattctcgAAATTATCTctttttatgtttgtttttt
tcctcAGGGACATTCGAAACGTTACAGTGGGTACCCTCTCACAGCGTATC
ACTAACCAAGTGTCGTCACTTAAAGGACTACACGCTCACTTGCAAGACAT
TCATACGTACTTAGAGCAAGTCATCAGCGGTAAACTACCTGTCAATCATA
CCATCATGTACCATCTGCAAGATATTTTCAATCTGTTACCCAACCTCAAC
GTTGAGGAATTCATTAAATCAATTACGGTGATGACCAACGATCAAATGGT
AGTTATTTATTTAGCATCCGTCGTACGTACAGTCATTGCACTCCACAATC
TCATTAATAACAAACTACAAAATAAGGACTTAGAACGGGAAAAAGAAGAA
GGCAAGAAAGATAAAGATGCAACAAAGGCTGATAAGgatgagaaaaaaga
taaaaaggaCTCCTCGAAAGATGACAAATCTACAACGGATAAGAAAGAAT
CGACCACCAAGAAATAAATGTTGAGATGTTGTTATTTTTACTCATTAGGT
TttgaattttgtgaaaaaagggATTTCAGTGACTTTTCCGAACTGGTATT
GTTCATAGAATGTTATTCTCATATTACAACTGATatatttaaatcatgtt
ttggAAATGGCTAATCCACGGTAATCTCTGGATAGACGATTCTTTATCGT
AACAAAGTTACTGACAATTTAATATTAGTATACTAATCTGATATTCCAAC
TCACCACTTCctcaaaatccaaattttagATATTCGGCCCCCAGATTTTC
TTAttgatttcaaaacttttcgtTTTCAAATTCTACCAACAATGAAATGC
CAAAAGATTTTGAAAGCACGTAAGAAGATATTGAACATCTCAGGATAAAC
TGTTAAGGTTGGAGAGACATCTTGCCTtcgtttgttttttaaatcaaatg
cAATATTTCCACAATTATTGTAACTTATTAACCAACGACCAATATCGGAT
TGAAATGTTGAACTTCCActaatgttttgaaagtttttaactACAGGAAT
TTTAAGCTTCTTCATTTTCCGTAGGAtatttttgttatgaatttCAACAT
AgatcatttttttgaatttgcaaATATGTTATAAACTGTTTGTATATTTT
CTGTGTTTGTTTTCTCCCCTTCTTCTTTGCTGTTTAGGGGTTTTTCTGGA
CATTTTGAGGATTATTTGCATTGCCTGCCCAGTTATTATGCGTAAAATCC
TGTCACTTATCAGcgcttatttttgttttgtcaaaAAGCCATCTTTTGAC
CAATACGATGC

Coding sequence (CDS) from alignment at sc0000264:293447..297457+

>TCONS_00017282 ID=TCONS_00017282|Name=TCONS_00017282|organism=Clytia hemisphaerica|type=CDS|length=6228bp|location=Sequence derived from alignment at sc0000264:293447..297457+ (Clytia hemisphaerica)
atgaccACCACAGAAACCACTCAGAAGCCTACTGCTGCCTCATCTCAAAA
TCCAAAAGATGCTATTGAAAGAGTTGTTATCCACCCATTGGTGCTGCTTA
GTGTTGTCGATCATTTTAACAGAATGTCAAAAGTTGGTAACCAGCGCCGT
GTAGCTGGTATTCTTTTGGGGTCAATACGTAATAAAGTTTTGGATGTGGC
AAATAGTTTTGCCATACCATTTGATGAAGATGATAGAGATCCATCTGTAT
GGTATCTTGATCATGACTATTTGGATAACATGGCTGCTATGTTCAAAAAA
GTTAATGCTAAAGAACGTGTCATCGGTTGGTACCATACTGGACCTAAACT
TCATCCCAACGATATTCGTATCAATGAGCTTGTCAGGAGATTCAATCCAA
ATTCAGTTCTGGTCATCATCGATGCTAAACCCAAAGAACTAGGACTTCCA
ACTGAAGCATACATTGCTATTGAAGAAGTGCACGATGACGGTACGCCAAC
ATCGAAAACGTTCGAACACATTCCGAGTGAAATCGGTGCCGAAGAAGCTG
AAGAAGTCGGTGTTGAACATCTCCTCAGGGACATTCGAAACGTTACAGTG
GGTACCCTCTCACAGCGTATCACTAACCAAGTGTCGTCACTTAAAGGACT
ACACGCTCACTTGCAAGACATTCATACGTACTTAGAGCAAGTCATCAGCG
GTAAACTACCTGTCAATCATACCATCATGTACCATCTGCAAGATATTTTC
AATCTGTTACCCAACCTCAACGTTGAGGAATTCATTAAATCAATTACGGT
GATGACCAACGATCAAATGGTAGTTATTTATTTAGCATCCGTCGTACGTA
CAGTCATTGCACTCCACAATCTCATTAATAACAAACTACAAAATAAGGAC
TTAGAACGGGAAAAAGAAGAAGGCAAGAAAGATAAAGATGCAACAAAGGC
TGATAAGgatgagaaaaaagataaaaaggaCTCCTCGAAAGATGACAAAT
CTACAACGGATAAGAAAGAATCGACCACCAAGAAATAAatgaccACCACA
GAAACCACTCAGAAGCCTACTGCTGCCTCATCTCAAAATCCAAAAGATGC
TATTGAAAGAGTTGTTATCCACCCATTGGTGCTGCTTAGTGTTGTCGATC
ATTTTAACAGAATGTCAAAAGTTGGTAACCAGCGCCGTGTAGCTGGTATT
CTTTTGGGGTCAATACGTAATAAAGTTTTGGATGTGGCAAATAGTTTTGC
CATACCATTTGATGAAGATGATAGAGATCCATCTGTATGGTATCTTGATC
ATGACTATTTGGATAACATGGCTGCTATGTTCAAAAAAGTTAATGCTAAA
GAACGTGTCATCGGTTGGTACCATACTGGACCTAAACTTCATCCCAACGA
TATTCGTATCAATGAGCTTGTCAGGAGATTCAATCCAAATTCAGTTCTGG
TCATCATCGATGCTAAACCCAAAGAACTAGGACTTCCAACTGAAGCATAC
ATTGCTATTGAAGAAGTGCACGATGACGGTACGCCAACATCGAAAACGTT
CGAACACATTCCGAGTGAAATCGGTGCCGAAGAAGCTGAAGAAGTCGGTG
TTGAACATCTCCTCAGGGACATTCGAAACGTTACAGTGGGTACCCTCTCA
CAGCGTATCACTAACCAAGTGTCGTCACTTAAAGGACTACACGCTCACTT
GCAAGACATTCATACGTACTTAGAGCAAGTCATCAGCGGTAAACTACCTG
TCAATCATACCATCATGTACCATCTGCAAGATATTTTCAATCTGTTACCC
AACCTCAACGTTGAGGAATTCATTAAATCAATTACGGTGATGACCAACGA
TCAAATGGTAGTTATTTATTTAGCATCCGTCGTACGTACAGTCATTGCAC
TCCACAATCTCATTAATAACAAACTACAAAATAAGGACTTAGAACGGGAA
AAAGAAGAAGGCAAGAAAGATAAAGATGCAACAAAGGCTGATAAGgatga
gaaaaaagataaaaaggaCTCCTCGAAAGATGACAAATCTACAACGGATA
AGAAAGAATCGACCACCAAGAAATAAatgaccACCACAGAAACCACTCAG
AAGCCTACTGCTGCCTCATCTCAAAATCCAAAAGATGCTATTGAAAGAGT
TGTTATCCACCCATTGGTGCTGCTTAGTGTTGTCGATCATTTTAACAGAA
TGTCAAAAGTTGGTAACCAGCGCCGTGTAGCTGGTATTCTTTTGGGGTCA
ATACGTAATAAAGTTTTGGATGTGGCAAATAGTTTTGCCATACCATTTGA
TGAAGATGATAGAGATCCATCTGTATGGTATCTTGATCATGACTATTTGG
ATAACATGGCTGCTATGTTCAAAAAAGTTAATGCTAAAGAACGTGTCATC
GGTTGGTACCATACTGGACCTAAACTTCATCCCAACGATATTCGTATCAA
TGAGCTTGTCAGGAGATTCAATCCAAATTCAGTTCTGGTCATCATCGATG
CTAAACCCAAAGAACTAGGACTTCCAACTGAAGCATACATTGCTATTGAA
GAAGTGCACGATGACGGTACGCCAACATCGAAAACGTTCGAACACATTCC
GAGTGAAATCGGTGCCGAAGAAGCTGAAGAAGTCGGTGTTGAACATCTCC
TCAGGGACATTCGAAACGTTACAGTGGGTACCCTCTCACAGCGTATCACT
AACCAAGTGTCGTCACTTAAAGGACTACACGCTCACTTGCAAGACATTCA
TACGTACTTAGAGCAAGTCATCAGCGGTAAACTACCTGTCAATCATACCA
TCATGTACCATCTGCAAGATATTTTCAATCTGTTACCCAACCTCAACGTT
GAGGAATTCATTAAATCAATTACGGTGATGACCAACGATCAAATGGTAGT
TATTTATTTAGCATCCGTCGTACGTACAGTCATTGCACTCCACAATCTCA
TTAATAACAAACTACAAAATAAGGACTTAGAACGGGAAAAAGAAGAAGGC
AAGAAAGATAAAGATGCAACAAAGGCTGATAAGgatgagaaaaaagataa
aaaggaCTCCTCGAAAGATGACAAATCTACAACGGATAAGAAAGAATCGA
CCACCAAGAAATAAatgaccACCACAGAAACCACTCAGAAGCCTACTGCT
GCCTCATCTCAAAATCCAAAAGATGCTATTGAAAGAGTTGTTATCCACCC
ATTGGTGCTGCTTAGTGTTGTCGATCATTTTAACAGAATGTCAAAAGTTG
GTAACCAGCGCCGTGTAGCTGGTATTCTTTTGGGGTCAATACGTAATAAA
GTTTTGGATGTGGCAAATAGTTTTGCCATACCATTTGATGAAGATGATAG
AGATCCATCTGTATGGTATCTTGATCATGACTATTTGGATAACATGGCTG
CTATGTTCAAAAAAGTTAATGCTAAAGAACGTGTCATCGGTTGGTACCAT
ACTGGACCTAAACTTCATCCCAACGATATTCGTATCAATGAGCTTGTCAG
GAGATTCAATCCAAATTCAGTTCTGGTCATCATCGATGCTAAACCCAAAG
AACTAGGACTTCCAACTGAAGCATACATTGCTATTGAAGAAGTGCACGAT
GACGGTACGCCAACATCGAAAACGTTCGAACACATTCCGAGTGAAATCGG
TGCCGAAGAAGCTGAAGAAGTCGGTGTTGAACATCTCCTCAGGGACATTC
GAAACGTTACAGTGGGTACCCTCTCACAGCGTATCACTAACCAAGTGTCG
TCACTTAAAGGACTACACGCTCACTTGCAAGACATTCATACGTACTTAGA
GCAAGTCATCAGCGGTAAACTACCTGTCAATCATACCATCATGTACCATC
TGCAAGATATTTTCAATCTGTTACCCAACCTCAACGTTGAGGAATTCATT
AAATCAATTACGGTGATGACCAACGATCAAATGGTAGTTATTTATTTAGC
ATCCGTCGTACGTACAGTCATTGCACTCCACAATCTCATTAATAACAAAC
TACAAAATAAGGACTTAGAACGGGAAAAAGAAGAAGGCAAGAAAGATAAA
GATGCAACAAAGGCTGATAAGgatgagaaaaaagataaaaaggaCTCCTC
GAAAGATGACAAATCTACAACGGATAAGAAAGAATCGACCACCAAGAAAT
AAatgaccACCACAGAAACCACTCAGAAGCCTACTGCTGCCTCATCTCAA
AATCCAAAAGATGCTATTGAAAGAGTTGTTATCCACCCATTGGTGCTGCT
TAGTGTTGTCGATCATTTTAACAGAATGTCAAAAGTTGGTAACCAGCGCC
GTGTAGCTGGTATTCTTTTGGGGTCAATACGTAATAAAGTTTTGGATGTG
GCAAATAGTTTTGCCATACCATTTGATGAAGATGATAGAGATCCATCTGT
ATGGTATCTTGATCATGACTATTTGGATAACATGGCTGCTATGTTCAAAA
AAGTTAATGCTAAAGAACGTGTCATCGGTTGGTACCATACTGGACCTAAA
CTTCATCCCAACGATATTCGTATCAATGAGCTTGTCAGGAGATTCAATCC
AAATTCAGTTCTGGTCATCATCGATGCTAAACCCAAAGAACTAGGACTTC
CAACTGAAGCATACATTGCTATTGAAGAAGTGCACGATGACGGTACGCCA
ACATCGAAAACGTTCGAACACATTCCGAGTGAAATCGGTGCCGAAGAAGC
TGAAGAAGTCGGTGTTGAACATCTCCTCAGGGACATTCGAAACGTTACAG
TGGGTACCCTCTCACAGCGTATCACTAACCAAGTGTCGTCACTTAAAGGA
CTACACGCTCACTTGCAAGACATTCATACGTACTTAGAGCAAGTCATCAG
CGGTAAACTACCTGTCAATCATACCATCATGTACCATCTGCAAGATATTT
TCAATCTGTTACCCAACCTCAACGTTGAGGAATTCATTAAATCAATTACG
GTGATGACCAACGATCAAATGGTAGTTATTTATTTAGCATCCGTCGTACG
TACAGTCATTGCACTCCACAATCTCATTAATAACAAACTACAAAATAAGG
ACTTAGAACGGGAAAAAGAAGAAGGCAAGAAAGATAAAGATGCAACAAAG
GCTGATAAGgatgagaaaaaagataaaaaggaCTCCTCGAAAGATGACAA
ATCTACAACGGATAAGAAAGAATCGACCACCAAGAAATAAatgaccACCA
CAGAAACCACTCAGAAGCCTACTGCTGCCTCATCTCAAAATCCAAAAGAT
GCTATTGAAAGAGTTGTTATCCACCCATTGGTGCTGCTTAGTGTTGTCGA
TCATTTTAACAGAATGTCAAAAGTTGGTAACCAGCGCCGTGTAGCTGGTA
TTCTTTTGGGGTCAATACGTAATAAAGTTTTGGATGTGGCAAATAGTTTT
GCCATACCATTTGATGAAGATGATAGAGATCCATCTGTATGGTATCTTGA
TCATGACTATTTGGATAACATGGCTGCTATGTTCAAAAAAGTTAATGCTA
AAGAACGTGTCATCGGTTGGTACCATACTGGACCTAAACTTCATCCCAAC
GATATTCGTATCAATGAGCTTGTCAGGAGATTCAATCCAAATTCAGTTCT
GGTCATCATCGATGCTAAACCCAAAGAACTAGGACTTCCAACTGAAGCAT
ACATTGCTATTGAAGAAGTGCACGATGACGGTACGCCAACATCGAAAACG
TTCGAACACATTCCGAGTGAAATCGGTGCCGAAGAAGCTGAAGAAGTCGG
TGTTGAACATCTCCTCAGGGACATTCGAAACGTTACAGTGGGTACCCTCT
CACAGCGTATCACTAACCAAGTGTCGTCACTTAAAGGACTACACGCTCAC
TTGCAAGACATTCATACGTACTTAGAGCAAGTCATCAGCGGTAAACTACC
TGTCAATCATACCATCATGTACCATCTGCAAGATATTTTCAATCTGTTAC
CCAACCTCAACGTTGAGGAATTCATTAAATCAATTACGGTGATGACCAAC
GATCAAATGGTAGTTATTTATTTAGCATCCGTCGTACGTACAGTCATTGC
ACTCCACAATCTCATTAATAACAAACTACAAAATAAGGACTTAGAACGGG
AAAAAGAAGAAGGCAAGAAAGATAAAGATGCAACAAAGGCTGATAAGgat
gagaaaaaagataaaaaggaCTCCTCGAAAGATGACAAATCTACAACGGA
TAAGAAAGAATCGACCACCAAGAAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009671XLOC_009671Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017282-proteinTCONS_00017282-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017282-exon-sc0000264-1491911889:293447..293597TCONS_00017282-exon-sc0000264-1491911889:293447..293597Clytia hemisphaericaexon
TCONS_00017282-exon-sc0000264-1510915933:293447..293597TCONS_00017282-exon-sc0000264-1510915933:293447..293597Clytia hemisphaericaexon
TCONS_00017282-exon-sc0000264-1575043694:293447..293597TCONS_00017282-exon-sc0000264-1575043694:293447..293597Clytia hemisphaericaexon
TCONS_00017282-exon-sc0000264-1491911889:293967..294199TCONS_00017282-exon-sc0000264-1491911889:293967..294199Clytia hemisphaericaexon
TCONS_00017282-exon-sc0000264-1510915933:293967..294199TCONS_00017282-exon-sc0000264-1510915933:293967..294199Clytia hemisphaericaexon
TCONS_00017282-exon-sc0000264-1575043694:293967..294199TCONS_00017282-exon-sc0000264-1575043694:293967..294199Clytia hemisphaericaexon
TCONS_00017282-exon-sc0000264-1491911889:294554..294646TCONS_00017282-exon-sc0000264-1491911889:294554..294646Clytia hemisphaericaexon
TCONS_00017282-exon-sc0000264-1510915933:294554..294646TCONS_00017282-exon-sc0000264-1510915933:294554..294646Clytia hemisphaericaexon
TCONS_00017282-exon-sc0000264-1575043694:294554..294646TCONS_00017282-exon-sc0000264-1575043694:294554..294646Clytia hemisphaericaexon
TCONS_00017282-exon-sc0000264-1491911889:294879..294976TCONS_00017282-exon-sc0000264-1491911889:294879..294976Clytia hemisphaericaexon
TCONS_00017282-exon-sc0000264-1510915933:294879..294976TCONS_00017282-exon-sc0000264-1510915933:294879..294976Clytia hemisphaericaexon
TCONS_00017282-exon-sc0000264-1575043694:294879..294976TCONS_00017282-exon-sc0000264-1575043694:294879..294976Clytia hemisphaericaexon
TCONS_00017282-exon-sc0000264-1491911889:295451..295531TCONS_00017282-exon-sc0000264-1491911889:295451..295531Clytia hemisphaericaexon
TCONS_00017282-exon-sc0000264-1510915933:295451..295531TCONS_00017282-exon-sc0000264-1510915933:295451..295531Clytia hemisphaericaexon
TCONS_00017282-exon-sc0000264-1575043694:295451..295531TCONS_00017282-exon-sc0000264-1575043694:295451..295531Clytia hemisphaericaexon
TCONS_00017282-exon-sc0000264-1491911889:295931..296022TCONS_00017282-exon-sc0000264-1491911889:295931..296022Clytia hemisphaericaexon
TCONS_00017282-exon-sc0000264-1510915933:295931..296022TCONS_00017282-exon-sc0000264-1510915933:295931..296022Clytia hemisphaericaexon
TCONS_00017282-exon-sc0000264-1575043694:295931..296022TCONS_00017282-exon-sc0000264-1575043694:295931..296022Clytia hemisphaericaexon
TCONS_00017282-exon-sc0000264-1491911889:296204..297457TCONS_00017282-exon-sc0000264-1491911889:296204..297457Clytia hemisphaericaexon
TCONS_00017282-exon-sc0000264-1510915933:296204..297457TCONS_00017282-exon-sc0000264-1510915933:296204..297457Clytia hemisphaericaexon
TCONS_00017282-exon-sc0000264-1575043694:296204..297457TCONS_00017282-exon-sc0000264-1575043694:296204..297457Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000264supercontigsc0000264:293447..297457 +
Expression

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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
156.999	162.214	114.214	108.408	155.843	124.525	130.403	143.006	87.4966	90.1352	63.1511	56.361	52.2309	49.6645	82.9662	93.4235	105.932	93.7637	36.6945	45.1207	65.0274	62.4125	89.344	79.1857	115.019	111.593	63.8771	49.4685	60.964	56.9087
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000555JAMM/MPN+_dom
IPR024969Rpn11/EIF3F_C
IPR033858MPN_RPN7_8
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: Cellular Component
TermDefinition
GO:0005838proteasome regulatory particle
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005838 proteasome regulatory particle
molecular_function GO:0005515 protein binding
Blast
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BLAST of TCONS_00017282 vs. Swiss-Prot (Human)
Match: PSMD7 (26S proteasome non-ATPase regulatory subunit 7 OS=Homo sapiens GN=PSMD7 PE=1 SV=2)

HSP 1 Score: 431.795 bits (1109), Expect = 4.073e-146
Identity = 208/283 (73.50%), Postives = 257/283 (90.81%), Query Frame = 3 
Query:  222 PKDAIERVVIHPLVLLSVVDHFNRMSKVGNQRRVAGILLGSIRNKVLDVANSFAIPFDEDDRDPSVWYLDHDYLDNMAAMFKKVNAKERVIGWYHTGPKLHPNDIRINELVRRFNPNSVLVIIDAKPKELGLPTEAYIAIEEVHDDGTPTSKTFEHIPSEIXXXXXXXXXXXHLLRDIRNVTVGTLSQRITNQVSSLKGLHAHLQDIHTYLEQVISGKLPVNHTIMYHLQDIFNLLPNLNVEEFIKSITVMTNDQMVVIYLASVVRTVIALHNLINNKLQNKD 1070
            P+ A+++VV+HPLVLLSVVDHFNR+ KVGNQ+RV G+LLGS + KVLDV+NSFA+PFDEDD+D SVW+LDHDYL+NM  MFKKVNA+ER++GWYHTGPKLH NDI INEL++R+ PNSVLVIID KPK+LGLPTEAYI++EEVHDDGTPTSKTFEH+ SEIGAEEAEEVGVEHLLRDI++ TVGTLSQRITNQV  LKGL++ L DI +YLE+V +GKLP+NH I+Y LQD+FNLLP+++++EF+K+  + TNDQMVV+YLAS++R+V+ALHNLINNK+ N+D
Sbjct:    2 PELAVQKVVVHPLVLLSVVDHFNRIGKVGNQKRVVGVLLGSWQKKVLDVSNSFAVPFDEDDKDDSVWFLDHDYLENMYGMFKKVNARERIVGWYHTGPKLHKNDIAINELMKRYCPNSVLVIIDVKPKDLGLPTEAYISVEEVHDDGTPTSKTFEHVTSEIGAEEAEEVGVEHLLRDIKDTTVGTLSQRITNQVHGLKGLNSKLLDIRSYLEKVATGKLPINHQIIYQLQDVFNLLPDVSLQEFVKAFYLKTNDQMVVVYLASLIRSVVALHNLINNKIANRD 284
The following BLAST results are available for this feature:
BLAST of TCONS_00017282 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PSMD74.073e-14673.5026S proteasome non-ATPase regulatory subunit 7 OS=... [more]
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