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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017242 ID=TCONS_00017242|Name=TCONS_00017242|organism=Clytia hemisphaerica|type=transcript|length=947bp
CTTGAAAGTGGAAACCGTAATAATGTTATTGTTCAAAACGACCTACAAAC
TTATGTAAGAAAATAGTTCGCACTCCATCGAATTAGTGACAAAAACACTT
TATTTACTTGCAATGTTTCTTAACAAAGCTAAAGGAAGGAGAGCTCATGT
TACAGCATCATAATATTAAAACACAGATTTCGCATATATACTTAACaagt
cagcaaaaatttctcaatGAAATCAAATACACTATAAAAACAGAAATACG
AACTGACACTAGTCAGAGATTCTCTCAGAAAACACACAGACAGGATTTGT
GGATTCGAAAATGGGTTTACTTCATTTAGTAACAGTTGCTGCACTGGCTC
AACTCGGCCTAGCGGCACAACCTTCAGATCCAACACCATGGCCCGCACAA
TTCACACAAACTTTCAAAGAAACCTTCTATTACCCAGTAATTGGCACCCA
TACAACGACAGGGACCTACTACTACGATTTCAAGAACTTGCGATACCGTA
TTGACCGCGCGAACGGACGTTACGACCGCTACTGTGGATTTAATGGTGTT
CGCGCTTTCCAAAATACTCCTTGCTCTCAACTGGTCATCAAAGGACAAAG
ATGGTTGATCTACCCAGAGAAGAAAGACTGCTGCATGTGCTGCACTGCAG
CTCAAGGGTGCGGTATTTTGAAACCGGATTGGACCAAAGGAGCTCTCTTC
GTCAATTCTGACAATGGAATGTATAAATGGAACCAAAAAGGCTTACAGGA
TAATTTCTACATTGAACGCCAAAGCGATCGCCGAATGGTCCGAATCAATC
AAGTTCCCAACGACATCCAAGATTACGATCCAGACTCATTTAAACCAACT
GTCGACCCAAAAGTTTTCGAGCTCCCTTCATATTGTCAGCAAAAAGCATG
CTCGTACGCTTCCACTTGTCGCGCGGTCGGCCGCCGTTAAACCGCCT Run BLAST on NCBI protein sequence of TCONS_00017242-protein >TCONS_00017242-protein ID=TCONS_00017242-protein|Name=TCONS_00017242-protein|organism=Clytia hemisphaerica|type=polypeptide|length=209bp
MGLLHLVTVAALAQLGLAAQPSDPTPWPAQFTQTFKETFYYPVIGTHTTT
GTYYYDFKNLRYRIDRANGRYDRYCGFNGVRAFQNTPCSQLVIKGQRWLI
YPEKKDCCMCCTAAQGCGILKPDWTKGALFVNSDNGMYKWNQKGLQDNFY
IERQSDRRMVRINQVPNDIQDYDPDSFKPTVDPKVFELPSYCQQKACSYA
STCRAVGRR Run BLAST on NCBI transcript from alignment at sc0000261:312394..313888+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017242 ID=TCONS_00017242|Name=TCONS_00017242|organism=Clytia hemisphaerica|type=transcript|length=1495bp|location=Sequence derived from alignment at sc0000261:312394..313888+ (Clytia hemisphaerica)
CTTGAAAGTGGAAACCGTAATAATGTTATTGTTCAAAACGACCTACAAAC
TTATGTAAGAAAATAGTTCGCACTCCATCGAATTAGTGACAAAAACACTT
TATTTACTTGCAATGTTTCTTAACAAAGCTAAAGGAAGGAGAGCTCATGT
TACAGCATCATAATATTAAAACACAGATTTCGCATATATACTTAACaagt
cagcaaaaatttctcaatGAAATCAAATACACTATAAAAACAGAAATACG
AACTGACACTAGTCAGAGATTCTCTCAGAAAACACACAGACAGGATTTGT
GGATTCGAAAATGGGTTTACTTCATTTAGTAACAGTTGCTGCACTGGCTC
AACTCGGCCTAGCGGCACAACCTTCAGATCCAACACCATGGCCCGCACAA
TTCACACAAACTTTCAAAGAAACCTTCTATTACCCAGTAATTGGCACCCA
TACAACGACAGGGACCTACTACTACGATTTCAAGAACTTGCGATACCGTA
TTGACCGCGCGAACGGACGTTACGACCGCTACTGTGGATTTAATGGTGTT
CGCGCTTTCCAAAATACTCCTTGCTCTCAACTGGTCATCAAAGGACAAAG
ATGGTTGATCTACCCAGAGAAGAAAGACTGCTGCATGTGAGTATCCTATA
AGATATATGAATTAGAGTTTCTGTCCAACTACACTCAgtagatttgggtg
gcagagcaagtgtatgcatttcgtccttattgtGACTTGTGCGTATGCAC
CCTGAATAAAATATACGCACAATTGACATAGGATGGCTGATAAATTGTAG
ATTTACAGGCCGAAAGAATGAAATTGAATTGGGATTTTGTCACCGGCTGT
ATGCTGTTAGTTGGACAGTAGTCCAAGGGTCTGAGGAATTTATAGCTTAC
GGCTTCTGCGTGCCACTCCTGTCTCTTCTTGGCTCAGGCTCTTTCAGAAT
TTACCCTCATAAGTAATACATTTGCTAATGGCTGTAAAATCGTTTTTCCT
TAATCTTATTGAGATTTCCGACATTTGTTACTCCCGTCAGAATACAGAAC
AAGAAAAAAtcgatttccaaaaaaattcacgTAAAACTCACGGTggtctt
tttttatcaatttcaagCAGACAGATATATGTATCCCCTAACTCCCAATG
CTTCTTAAAACTCATTGTTTTCTTACTCTTGTAGGTGCTGCACTGCAGCT
CAAGGGTGCGGTATTTTGAAACCGGATTGGACCAAAGGAGCTCTCTTCGT
CAATTCTGACAATGGAATGTATAAATGGAACCAAAAAGGCTTACAGGATA
ATTTCTACATTGAACGCCAAAGCGATCGCCGAATGGTCCGAATCAATCAA
GTTCCCAACGACATCCAAGATTACGATCCAGACTCATTTAAACCAACTGT
CGACCCAAAAGTTTTCGAGCTCCCTTCATATTGTCAGCAAAAAGCATGCT
CGTACGCTTCCACTTGTCGCGCGGTCGGCCGCCGTTAAACCGCCT Coding sequence (CDS) from alignment at sc0000261:312394..313888+ >TCONS_00017242 ID=TCONS_00017242|Name=TCONS_00017242|organism=Clytia hemisphaerica|type=CDS|length=1260bp|location=Sequence derived from alignment at sc0000261:312394..313888+ (Clytia hemisphaerica)
ATGGGTTTACTTCATTTAGTAACAGTTGCTGCACTGGCTCAACTCGGCCT
AGCGGCACAACCTTCAGATCCAACACCATGGCCCGCACAATTCACACAAA
CTTTCAAAGAAACCTTCTATTACCCAGTAATTGGCACCCATACAACGACA
GGGACCTACTACTACGATTTCAAGAACTTGCGATACCGTATTGACCGCGC
GAACGGACGTTACGACCGCTACTGTGGATTTAATGGTGTTCGCGCTTTCC
AAAATACTCCTTGCTCTCAACTGGTCATCAAAGGACAAAGATGGTTGATC
TACCCAGAGAAGAAAGACTGCTGCATGTGCTGCACTGCAGCTCAAGGGTG
CGGTATTTTGAAACCGGATTGGACCAAAGGAGCTCTCTTCGTCAATTCTG
ACAATGGAATGTATAAATGGAACCAAAAAGGCTTACAGGATAATTTCTAC
ATTGAACGCCAAAGCGATCGCCGAATGGTCCGAATCAATCAAGTTCCCAA
CGACATCCAAGATTACGATCCAGACTCATTTAAACCAACTGTCGACCCAA
AAGTTTTCGAGCTCCCTTCATATTGTCAGCAAAAAGCATGCTCGTACGCT
TCCACTTGTCGCGCGGTCGGCCGCCGTTAAATGGGTTTACTTCATTTAGT
AACAGTTGCTGCACTGGCTCAACTCGGCCTAGCGGCACAACCTTCAGATC
CAACACCATGGCCCGCACAATTCACACAAACTTTCAAAGAAACCTTCTAT
TACCCAGTAATTGGCACCCATACAACGACAGGGACCTACTACTACGATTT
CAAGAACTTGCGATACCGTATTGACCGCGCGAACGGACGTTACGACCGCT
ACTGTGGATTTAATGGTGTTCGCGCTTTCCAAAATACTCCTTGCTCTCAA
CTGGTCATCAAAGGACAAAGATGGTTGATCTACCCAGAGAAGAAAGACTG
CTGCATGTGCTGCACTGCAGCTCAAGGGTGCGGTATTTTGAAACCGGATT
GGACCAAAGGAGCTCTCTTCGTCAATTCTGACAATGGAATGTATAAATGG
AACCAAAAAGGCTTACAGGATAATTTCTACATTGAACGCCAAAGCGATCG
CCGAATGGTCCGAATCAATCAAGTTCCCAACGACATCCAAGATTACGATC
CAGACTCATTTAAACCAACTGTCGACCCAAAAGTTTTCGAGCTCCCTTCA
TATTGTCAGCAAAAAGCATGCTCGTACGCTTCCACTTGTCGCGCGGTCGG
CCGCCGTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017242-exon-sc0000261-1491911889:312394..313029 | TCONS_00017242-exon-sc0000261-1491911889:312394..313029 | Clytia hemisphaerica | exon |
| TCONS_00017242-exon-sc0000261-1510915933:312394..313029 | TCONS_00017242-exon-sc0000261-1510915933:312394..313029 | Clytia hemisphaerica | exon |
| TCONS_00017242-exon-sc0000261-1575043694:312394..313029 | TCONS_00017242-exon-sc0000261-1575043694:312394..313029 | Clytia hemisphaerica | exon |
| TCONS_00017242-exon-sc0000261-1491911889:313578..313888 | TCONS_00017242-exon-sc0000261-1491911889:313578..313888 | Clytia hemisphaerica | exon |
| TCONS_00017242-exon-sc0000261-1510915933:313578..313888 | TCONS_00017242-exon-sc0000261-1510915933:313578..313888 | Clytia hemisphaerica | exon |
| TCONS_00017242-exon-sc0000261-1575043694:313578..313888 | TCONS_00017242-exon-sc0000261-1575043694:313578..313888 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000261 | supercontig | sc0000261:312394..313888 + |
Blast
The following BLAST results are available for this feature:
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