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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017241 ID=TCONS_00017241|Name=TCONS_00017241|organism=Clytia hemisphaerica|type=transcript|length=3619bpRun BLAST on NCBI protein sequence of TCONS_00017241-protein >TCONS_00017241-protein ID=TCONS_00017241-protein|Name=TCONS_00017241-protein|organism=Clytia hemisphaerica|type=polypeptide|length=891bp MLQTRICCLLMLLSICSIAEADKPKLTDKSTLPKQALGGDISMSCTFESSRun BLAST on NCBI transcript from alignment at sc0000261:293363..311140+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00017241 ID=TCONS_00017241|Name=TCONS_00017241|organism=Clytia hemisphaerica|type=transcript|length=17778bp|location=Sequence derived from alignment at sc0000261:293363..311140+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000261:293363..311140+ >TCONS_00017241 ID=TCONS_00017241|Name=TCONS_00017241|organism=Clytia hemisphaerica|type=CDS|length=42816bp|location=Sequence derived from alignment at sc0000261:293363..311140+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00017241 vs. Swiss-Prot (Human)
Match: FGFR3 (Fibroblast growth factor receptor 3 OS=Homo sapiens GN=FGFR3 PE=1 SV=1) HSP 1 Score: 239.965 bits (611), Expect = 8.138e-66 Identity = 115/274 (41.97%), Postives = 175/274 (63.87%), Query Frame = 3
Query: 1680 IVFDESLGEGEYGHIYGGRII--EDESATVFKECSIKMLKDDWTAEQRRDMLAELRMMRRIAKHRNVITLMGWCITDDNVYVLEEYAPFGSLLEFVRAQRTIHQSREELDQLSQEDRVDTKTLLSFASQIASGMNHLEQLQVIHRDLACRNVYLSFEKTCKIADYGLVRDIYAENVYRKVTGGQLPVRWMAKESIFEGQYTHKSDVWSFGILLWELVNLGKIPYPGLVRTEHLLTELEQGYHMENPGHVSTDIYLLMSQCWNDDPSRRPSFEKL 2495
+ + LGEG +G + I + + A ++KMLKDD T + D+++E+ MM+ I KH+N+I L+G C +YVL EYA G+L EF+RA+R E+++ K L+S A Q+A GM +L + IHRDLA RNV ++ + KIAD+GL RD++ + Y+K T G+LPV+WMA E++F+ YTH+SDVWSFG+LLWE+ LG PYPG + E L L++G+ M+ P + + D+Y++M +CW+ PS+RP+F++L
Sbjct: 472 LTLGKPLGEGCFGQVVMAEAIGIDKDRAAKPVTVAVKMLKDDATDKDLSDLVSEMEMMKMIGKHKNIINLLGACTQGGPLYVLVEYAAKGNLREFLRARRPPGLDYSFDTCKPPEEQLTFKDLVSCAYQVARGMEYLASQKCIHRDLAARNVLVTEDNVMKIADFGLARDVHNLDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGSPYPG-IPVEELFKLLKEGHRMDKPANCTHDLYMIMRECWHAAPSQRPTFKQL 744 The following BLAST results are available for this feature:
BLAST of TCONS_00017241 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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