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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017229 ID=TCONS_00017229|Name=TCONS_00017229|organism=Clytia hemisphaerica|type=transcript|length=1326bpRun BLAST on NCBI transcript from alignment at sc0000261:159575..215350+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00017229 ID=TCONS_00017229|Name=TCONS_00017229|organism=Clytia hemisphaerica|type=transcript|length=55776bp|location=Sequence derived from alignment at sc0000261:159575..215350+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00017229 vs. Swiss-Prot (Human)
Match: K319L (Dyslexia-associated protein KIAA0319-like protein OS=Homo sapiens GN=KIAA0319L PE=1 SV=2) HSP 1 Score: 283.493 bits (724), Expect = 6.165e-85 Identity = 155/355 (43.66%), Postives = 215/355 (60.56%), Query Frame = 1
Query: 4 AGDDKEIVYPDDSTTLDGSKSTDNSKITSYLWQKISGPDKIKIVGATNAKVHLTDLVPGTYVIKLTVTDDKKLTGSDTVKIHVKKNHNDPPIAVAGQDHVVYLPSRTVSIDGSKSHDDGLIDAFKWTRAGLSPAAGTVVNASDQQAVLQLTDLVKGQYTFQLTVTDDKGLTGSDEVSVYVKENPFSSNLVEMYLGIDINKFTEEDKKQLLRKISVLLEVGSEFVFVQGISDLGFKKGVKLIFYVKDPNFEDRRFDGKFVADTLKQKVGNGGKLFDI-TMLRVEPYVCRKKCSGHGYCDRVSKKCVCDAFWTANFFKAHLGDKESNCDWSILYMSVVIFGAFLLLIGLSWT-ICFC 1062
AG DKE+ P DSTTLDGSKS+D+ KI SYLW+K GPD +++ A ++ +T L GTYV LTV D++ L +V + VK+ N PPIA + V+ LP+ T +DGSKS DD I ++ WTR SPAAG V+N SD +L L++LV+G YTF L VTD KG + +D +V VK +P +NLVE+ L I++++ TE K +R+I VLL V + VQ I ++ K++F+V++ + F G VA LK ++ F I L V C+ CS HG+CD +K+C+CD FW NF K L D +SNC+WS+LY+ + F + L LSWT IC C
Sbjct: 603 AGPDKELTLPVDSTTLDGSKSSDDQKIISYLWEKTQGPDGVQLENANSSVATVTGLQVGTYVFTLTVKDERNLQSQSSVNVIVKEEINKPPIAKITGNVVITLPTSTAELDGSKSSDDKGIVSYLWTRDEGSPAAGEVLNHSDHHPILFLSNLVEGTYTFHLKVTDAKGESDTDRTTVEVKPDPRKNNLVEIILDINVSQLTERLKGMFIRQIGVLLGVLDSDIIVQKIQPYT-EQSTKMVFFVQN-EPPHQIFKGHEVAAMLKSELRKQKADFLIFRALEVNTVTCQLNCSDHGHCDSFTKRCICDPFWMENFIKVQLRDGDSNCEWSVLYVIIATFVIVVALGILSWTVICCC 955 HSP 2 Score: 120.939 bits (302), Expect = 4.314e-29 Identity = 69/179 (38.55%), Postives = 107/179 (59.78%), Query Frame = 1
Query: 16 KEIVYPDDSTTLDGSKSTDNSKITSYLWQKISGPDKIKIVGATNAKVHLTDLVPGTYVIKLTVTDDKKLTGSDTVKIHVKKNHNDPPIAVAGQDHVVYLPSRTVSIDGSKSHDDGLIDAFKWTRAGLSPAA-GTVVNASD-QQAVLQLTDLVKGQYTFQLTVTDDKGLTGSDEVSVYVK 546
+EI P ST +DGS+STD+ KI Y W+++ GP + + + A + L+ LVPG Y LTV D T S T + V K + PP+A AG + V+ LP ++++ G++S DD I +++W+ LSP++ G VV + LQL+ + +G YT+QLTVTD G + +V+V V+
Sbjct: 417 QEISLPTTSTVIDGSQSTDDDKIVQYHWEELKGPLREEKISEDTAILKLSKLVPGNYTFSLTVVDSDGATNSTTANLTVNKAVDYPPVANAGPNQVITLPQNSITLFGNQSTDDHGITSYEWS---LSPSSKGKVVEMQGVRTPTLQLSAMQEGDYTYQLTVTDTIGQQATAQVTVIVQ 592 HSP 3 Score: 97.8265 bits (242), Expect = 1.238e-21 Identity = 68/185 (36.76%), Postives = 98/185 (52.97%), Query Frame = 1
Query: 4 AGDDKEIVYPDDSTTLDGSKSTDNSKITSYLWQKISGPDKIKIV---GATNAKVHLTDLVPGTYVIKLTVTDDKKLTGSDTVKIHVKKNHNDPPIAVAGQDHVVYLPSRTVSIDGSKSHDDGLIDAFKWTRAGLSPAAGTVVNASDQQAVLQLTDLVKGQYTFQLTVTDDKGLTGSDEVSVYVKE 549
AG ++ I P +S TL G++STD+ ITSY W +S K K+V G + L+ + G Y +LTVTD + V + V+ +N PP A AG D + LP + ++DGSKS DD I ++ W + P + NA+ +V +T L G Y F LTV D++ L V+V VKE
Sbjct: 507 AGPNQVITLPQNSITLFGNQSTDDHGITSYEW-SLSPSSKGKVVEMQGVRTPTLQLSAMQEGDYTYQLTVTDTIGQQATAQVTVIVQPENNKPPQADAGPDKELTLPVDSTTLDGSKSSDDQKIISYLWEKTQ-GPDGVQLENANS--SVATVTGLQVGTYVFTLTVKDERNLQSQSSVNVIVKE 687 The following BLAST results are available for this feature:
BLAST of TCONS_00017229 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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