TCONS_00017224 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00017224
Unique Name	TCONS_00017224
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1504

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000261:142408..146811+

transcript sequence

>TCONS_00017224 ID=TCONS_00017224|Name=TCONS_00017224|organism=Clytia hemisphaerica|type=transcript|length=1504bp
tgtcctgttgaataattatgtagtccagccataaaaacaatgatagagcc
atgcataattactgtatcatgcatattgtaataattatgcatggttttat
cattgttttttctgctggactacataattattcaacagggtggcctcttt
gaaaaaaggtctataaatgTTATTGAGGGACATGGAAAAATGCACATGCA
CACTGCTTGACCCAAAAAGAAGCAAGCAAAAGTCCAGCATTCATTTTCAA
TTGAATACATTCTGGGTTTCAATTTTATTAGTTACTGTACTTGTTGATCA
AGCTTTTTCTTGGAGGACTGACGATCTATATAGAGATAAAAGAGGAAGGC
AACAAGACTTTAATGATTATGAGACATCAAATGAATATGACTCTTCAAAT
GATAGACAGCCATCTGCTGCATCTCGCCATCATCATCGCTCAAGGATTTC
TAGCAGTTTTCGTAGAGATTACAGGACTTGTGTACAAGGTGGCGAATATC
TAAGAGGATTTACGCTTGAAGGAGGCACAAAAGCAGGAAATTTTACTAGG
TTAGGGGATGCAGATACGCTGAATGAATGTGCTTCTTTGTGCTGTATGCG
GAAATCTTGTCAACAAGCGCTACTTTTGACTCAACCAGATACTGGATACA
AGACATGTTTTCAAGTTGTTTGTACAAAATCAAGTTCTTGTAAAGCAATC
AGTGATAGAGATTCAAATTATAACCCACAACTTTTTAGAAAAGGTTCAGC
AAGCAGTAACAAAAAAGTGGCTACCTCAGAGGTTGATTCACACAGCATCA
TATCAAATGAAGGGAAAGGATTTTGTCGACAGATTTCTGGTCATGCATGT
GCGAATTATGTTGATCCCAATGCAATGTATTATTTCACAAGTAACAAGAA
TAACACAGACTTGGACAAAAGATTACAAAAACCCATTAAACTGATTAGCA
GCCGTTTGACTGGAAAATGCAAAACCATTGCTCTTCAAGCTATATGTTAC
CGCTTCTATCCACAATGCTCTAAACTTTCAAGCACACCAAAATCAATAAA
TGTTTGTGAAGATGAATGCACTGAAATTCTTGCAGGAGATTGTTCTGATG
CGTTTGAAATTGCGCACTTGTccaaatatttacaaaaagtgaTTCCAAAA
TGTGCGGAAAGTAATACATATTCTGGAGAAGACGATGATGAAGATCAAGA
GAATGGCAATTCTGACGCTCAATGTACTCATCTGCAAGAagTTCTTCCAA
AAGCAATCAATCACCCTATTCGGGCTGTTCCTACAACGTCATCATCAACA
ACCATACCTTTCAAAACCAACCCAACCAACTCAGTCAAGCATACCACACT
CAAACCATCTCAATCACAATCTTTTACTGGGCGATCCCAGAATGCAACAA
AACAACACATTTATAATCCAACTAGAGGATTTACTTCAAGAAAACCGATC
ACAACACCAACAGTTGACAATAATGATGTCGATGATCGCTCAGACAATCG
AAAT

Run BLAST on NCBI

transcript from alignment at sc0000261:142408..146811+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00017224 ID=TCONS_00017224|Name=TCONS_00017224|organism=Clytia hemisphaerica|type=transcript|length=4404bp|location=Sequence derived from alignment at sc0000261:142408..146811+ (Clytia hemisphaerica)
tgtcctgttgaataattatgtagtccagccataaaaacaatgatagagcc
atgcataattactgtatcatgcatattgtaataattatgcatggttttat
cattgttttttctgctggactacataattattcaacagggtggcctcttt
gaaaaaaggtctataaatgTTATTGAGGGACATGGAAAAATGCACATGCA
CACTGCTTGACCCAAAAAGAAGCAAGCAAAAGTCCAGCATTCATTTTCAA
TTGAATACATTCTGGGTTTCAATTTTATTAGTTACTGTACTTGTTGATCA
AGCTTTTTCTTGGAGGACTGACGATCTATATAGAGATAAAAGAGGAAGGC
AACAAGACTTTAATGATTATGAGACATCAAATGAATATGACTCTTCAAAT
GATAGACAGCCATCTGCTGCATCTCGCCATCATCATCGCTCAAGGATTTC
TAGCAGTTTTCGTAGAGATTACAGGACTTGTGTACAAGGTGGCGAATATC
TAAGAGGATTTACGCTTGAAGGAGGCACAAAAGCAGGAAATTTTACTAGG
TTAGGGGATGCAGATACGCTGAATGAATGTGCTTCTTTGTGCTGTATGCG
GAAATCTTGTCAACAAGCGCTACTTTTGACTCAACCAGATACTGGATACA
AGACATGTTTTCAAGTTGTTTGTACAAAATCAAGTTCTTGTAAAGCAATC
AGTGATAGAGATTCAAATTATAACCCACAACTTTTTAGAAAAGGTTCAGC
AAGCAGTAACAAAAAAGGTATAACATTGAGCTATTCCCAAAATAATAAAT
TCTTTGTTGATACTCCTGTATAAATATAATCTATTTATTTTGTATGTCCT
TAGGGAAATACCAATCAATTCAAAATCCTCCCTTTCCACctagaaataaa
tatttttaaacaagaaaaaatctaacaaaataGGAAAATAGTCAAATTTC
AATTCCGGGATGAAATCTCTTGGGTTgtaaaattttttaactttattgtT
TATATATTTATCAGTGGCTACCTCAGAGGTTGATTCACACAGCATCATAT
CAAATGAGTAAGTCACTTCTATCTGCAGTCTCTGAATACGCAAGAAAAGA
GCTTCTATTAAATAATATATACTTTTAAGTTTAGCTCTTTAGAAGGTGAG
GCACAGTGTGTACAATTCCATCCTcagattttaattttcacttaaaatct
ataccgggtgcgccagaAAAAGGTATACAAGTTTTTCGAGATATTGTAGG
CTTTAGGAtgagaatttttatttgattctttttcCATTGTATAGGGGAAA
ATCTAACTTAAACTTTGGtatataaaactttaaaataggtttagtcaatc
aaaagttatgctaaaaaaactgaaaatttcgacttaaccaaaaattcaaa
attcattagaaacaaggaacaaaattttctctttgtttATTGTCACTTAA
ACAGTTAAATAGCCATAAATGAATAAAATTGTCAATTGGTAACTGTAAAA
TGGTTGATTTAAGGTCGCTAGAGCTCAAACTTTGCTAAGAAAGTAAAAAT
CTCcataaaaattcaaagattCCTGCTAAAtagctaaaaactaaaaaaaa
catccaatttTCAAGTGAAACTTTCAAAATGCCACCATATCGATACTTCG
ACGCCCTGATTTTAGTTTTGAGGcttaatttgaattattttaataTCCAA
TGAGTTGAGGAAAGCTTAAAGACCaacattttaccaaaaaaaatgcTTAG
AAAATTTTATCGAAATACCCTTGATAATATTGGTAATTGTACATGTACAT
TGTACattgtacaccttttttcccattttttgtcaaaaaaaattttttca
gttaaagttgaagaaaagttactggatttcattttggcaaaatcgcgatc
ttaaaatctttttttgatccagagttataaccatttaaatttcaaaacaa
agttcgtcttatgatggattatttactcaaataattgNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNtaggatttaaagagttaaagtcaattccaaaaaaaatcccaagaca
cttttttagttcaatctattgggaacatagtatcaaaattattttttcaa
aattcaaaagctatgggtgactttaacttctttgaagtaggtaaggttaa
aattcttaagattttaattatgtcctacccagttttttaaattcagctga
aacttttaccattagaaagagaatattattggctttcagaaaatatatac
ttttgatatataaaaatttgttgttctaaagatatgattatgatcaatta
aagagaatgtgtcaagaaaggtgaacacatacctcaatgaattttgaatt
tttgggtaAGTCaagattttcagttttttgtatcataacttttgattgac
tgAACCGATTTTGAAGTTTTATATACCAAAGTTTAAGTTAGATTTTCCCC
TatacaatgaaaaaagaatcaaataaaaattctcaTCCTAAAGCctacaa
tatctcgacaaacttGTATACTTTTTTCTGGCGCACCCagtattgtaatt
ttttgaaaaactggaATTTAATAAGAACATAATTTTTCTTAATAAAAATA
TGATAATAAAACTTTTAACCCCTAAAGTAAAAGTTTTAAGACAATGTACA
CTTGCCTTTATGTTGCTCTGAATAATCATATTATAATGACTTTGAAAGCT
TTATTTTAAACATTTCAGCACAGCACTAGATAAAGATTTACCAGCACTTG
TGAGAGTTAAACGGTATTTAACCCTTATTATAATGATTAAATTTGCAGTT
CTAGTGTAactttaatatcttaaaaataaGACATAATATTTTAGCAATCA
AAGTAAAAACTGTAACTGTAACAACCAATTGTTTACTAAGtttaatttta
ttcaactttAAGAAACAAATAGGTActttaattgattttaaacacataaa
ttgcaacttttttgatttccaatttATAACATCGCTTGTATAGAGCACTG
AAGAGgatttttaatcgaaaagcttttgctcaattttaaaataaaacttt
gttgttttttctttaaattaacttttggaatggcaaaatttcaaaaaaac
aaatagaTATGTTTTCATTCAATTGCTGCAGATTACTATTATAATTTTAT
TTCAGAGGGAAAGGATTTTGTCGACAGATTTCTGGTCATGCATGTGCGAA
TTATGTTGATCCCAATGCAATGTATTATTTCACAAGTAACAAGAATAACA
CAGACTTGGACAAAAGATTACAAAAACCCATTAAACTGATTAGCAGCCGT
TTGACTGGAAAATGCAAAACCATTGCTCTTCAAGCTATATGTTACCGCTT
CTATCCACAATGCTCTAAACTTTCAAGCACACCAAAATCAATAAATGTTT
GTGAAGATGAATGCACTGAAATTCTTGCAGGAGATTGTTCTGATGCGTTT
GAAATTGCGCACTTGTccaaatatttacaaaaagtgaTTCCAAAATGTGC
GGAAAGTAATACATATTCTGGAGAAGACGATGATGAAGATCAAGAGAATG
GCAATTCTGACGCTCAATGTACTCATCTGCAAGAaggtatttatttttgt
tttcatagcATAGCCATAGCATTTTTCGGGGGGACAAAGaatctttaaaa
gaatttccagggttgtgatatttttaagaaaagtcTAAATAATACgaaat
aagacttttttagTCTGTTCAATACTGTGTTTATACTATTTTATTCTTAC
CAATGATTTTGAAttattctttttcttcaaaagcaAGATTACTGGATTTT
ATCTATGTCCTTACTTCTGTTACTGAAATCTCTACAAtataagaaaagtt
tgaaattgaTTAATAGATATAACTTCAATATTTATCTACAGTTCTTCCAA
AAGCAATCAATCACCCTATTCGGGCTGTTCCTACAACGTCATCATCAACA
ACCATACCTTTCAAAACCAACCCAACCAACTCAGTCAAGCATACCACACT
CAAACCATCTCAATCACAATCTTTTACTGGGCGATCCCAGAATGCAACAA
AACAACACATTTATAATCCAACTAGAGGATTTACTTCAAGAAAACCGATC
ACAACACCAACAGTTGACAATAATGATGTCGATGATCGCTCAGACAATCG
AAAT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_009639	XLOC_009639	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00017224-exon-sc0000261-1491911889:142408..143174	TCONS_00017224-exon-sc0000261-1491911889:142408..143174	Clytia hemisphaerica	exon
TCONS_00017224-exon-sc0000261-1510915933:142408..143174	TCONS_00017224-exon-sc0000261-1510915933:142408..143174	Clytia hemisphaerica	exon
TCONS_00017224-exon-sc0000261-1575043694:142408..143174	TCONS_00017224-exon-sc0000261-1575043694:142408..143174	Clytia hemisphaerica	exon
TCONS_00017224-exon-sc0000261-1491911889:143422..143464	TCONS_00017224-exon-sc0000261-1491911889:143422..143464	Clytia hemisphaerica	exon
TCONS_00017224-exon-sc0000261-1510915933:143422..143464	TCONS_00017224-exon-sc0000261-1510915933:143422..143464	Clytia hemisphaerica	exon
TCONS_00017224-exon-sc0000261-1575043694:143422..143464	TCONS_00017224-exon-sc0000261-1575043694:143422..143464	Clytia hemisphaerica	exon
TCONS_00017224-exon-sc0000261-1491911889:145813..146243	TCONS_00017224-exon-sc0000261-1491911889:145813..146243	Clytia hemisphaerica	exon
TCONS_00017224-exon-sc0000261-1510915933:145813..146243	TCONS_00017224-exon-sc0000261-1510915933:145813..146243	Clytia hemisphaerica	exon
TCONS_00017224-exon-sc0000261-1575043694:145813..146243	TCONS_00017224-exon-sc0000261-1575043694:145813..146243	Clytia hemisphaerica	exon
TCONS_00017224-exon-sc0000261-1491911889:146549..146811	TCONS_00017224-exon-sc0000261-1491911889:146549..146811	Clytia hemisphaerica	exon
TCONS_00017224-exon-sc0000261-1510915933:146549..146811	TCONS_00017224-exon-sc0000261-1510915933:146549..146811	Clytia hemisphaerica	exon
TCONS_00017224-exon-sc0000261-1575043694:146549..146811	TCONS_00017224-exon-sc0000261-1575043694:146549..146811	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000261	supercontig	sc0000261:142408..146811 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.39245	3.58981	1.43043	0.974637	16.0662	10.6716	11.1224	11.9483	8.72784	12.5601	7.60693	8.65804	6.92864	5.59153	6.10667	6.7022	4.5173	6.87706	5.58533	9.00088	4.11004	5.30226	3.61435	6.52886	8.46983	7.50527	5.68069	3.89917	6.06773	7.10785

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00017224 vs. Swiss-Prot (Human)

BLAST of TCONS_00017224 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00017224 (transcript) - C. hemisphaerica