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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017222 ID=TCONS_00017222|Name=TCONS_00017222|organism=Clytia hemisphaerica|type=transcript|length=1512bp
gAAAACTTCAGAATATTATTATACAACAACAGATACATTTGCTGTGTCAT
CGCTGATGATGTGAAAGTATTTAAATGGCTCACAAACAAATAAAAGTATG
TTCCAGAACGAAAGTGAATATCGATCACGTAAATATAAAGAGTGATCGAT
CGTTCAGAGAGAATAAGGTTGTAGAAAACGAAGCTTTGTTGTTTAAACTA
ATTGTACTTTAACCGACAAAAGCTCACAATCAAGGACTCAAGTGGTTGAT
AGACGCTTTGTCTAAACAAAGCTGACAGTAACAGTGACAACTTGAGTGAA
CGAGTTGCTACCAGCCTGGTTCATGGTTTATAACCAGCAGGCCTTACTTT
GGAGAGTTTGTGTGTGTGTCAAAAGACTTTCTGAACAGACCAAGACTGAA
TATTGATTGTGATTTCATAAGAATTTGTGGAGAAGTGGCTGGAAAGAAGG
AGAAGAATTGGTTGTAAAGTTAGTGATGCAGTTTATCAAAGAGTTATTGT
GTATCCCATCCAAGAAAGCATTCACTCTTTATAACGTTAATGTTCAAATC
GAATATGGAACCATATGAGGATACTTGGGTCGTTACATGGAATACGCCTC
ACAAATAAAGAAGAAGATTCCACAAACGACCGTCAAAGGGAAGAAAGGAA
GAACTAGTTGCTTTGAAATTACCGTCAACGGACAAATTGTCTTTTCCAAA
TTATCACAAGGGGGTTTCCCTGTGATGAAGAAGCTTATTCAACAAATCAA
AAACGCTCAAAAGGGAAAACCCGTCAGACAAGTCAGTAGACGACATAACG
ACATAACAAAGACGTTATTTTCATCAAGCAGTGACGACATTTGTAGATTA
TAGATCTCGATAGTAGCTCCTTATCACGTATGATTTGAGGTgacccagac
ggcacacaacgtcaaaacaacgtccatgtgacattcttaacgtccaaata
acgttatttgaacgttaaaacaacgttgtgtgccagctggggattGTTTG
CAACTTATAAATACAACTTTTCAGTTCAAATGTAATCATACAAATCTTTG
GAGTCATGTCTATTCAAGGATATCTATTCTAAAGTTTAtttatcagaaat
tttatgcctCGGTCAACCAAGCATGTACCTATGACGGTTGTCAACATAAA
CTCCTGAATAAGCGAGGCGTTGACAACCCGATCTTTTTTATACATTGCAA
GGAAAATCGAGGCGAAAATTATAATGttagggtagggcgtcaacagtcat
ttgtggggcaaagtcaaaaaattcaagatgtagtgtttttttatgaaaat
ttaacctattgtgaggcattctgcgcaatttttaaggtcagaagtccaaa
attggccgNNNNNNNNNNNNNNNNNNNNNNNtccaaaattggccgaaccc
ccctgggggtactgattcgcactacaggcaaaaattggaaaaaatggcat
tttctggccttttcaggcctgtaaatatgtcaaaactattgcaaatctta
tttttttcattt Run BLAST on NCBI transcript from alignment at sc0000261:132565..136252+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017222 ID=TCONS_00017222|Name=TCONS_00017222|organism=Clytia hemisphaerica|type=transcript|length=3688bp|location=Sequence derived from alignment at sc0000261:132565..136252+ (Clytia hemisphaerica)
gAAAACTTCAGAATATTATTATACAACAACAGATACATTTGCTGTGTCAT
CGCTGATGATGTGAAAGTATTTAAATGGCTCACAAACAAATAAAAGTATG
TTCCAGAACGAAAGTGAATATCGATCACGTAAATATAAAGAGTGATCGAT
CGTTCAGAGAGAATAAGGTTGTAGAAAACGAAGCTTTGTTGTTTAAACTA
ATTGTACTTTAACCGACAAAAGCTCACAATCAAGGACTCAAGTGGTTGAT
AGACGCTTTGTCTAAACAAAGCTGACAGTAACAGTGACAACTTGAGTGAA
CGAGTTGCTACCAGCCTGGTTCATGGTTTATAACCAGCAGGCCTTACTTT
GGAGAGTTTGTGTGTGTGTCAAAAGACTTTCTGAACAGACCAAGACTGAA
TATTGATTGTGATTTCATAAGAATTTGTGGAGAAGTGGCTGGAAAGAAGG
AGAAGAATTGGTTGTAAAGTTAGTGATGCAGTTTATCAAAGAGTTATTGT
GTATCCCATCCAAGAAAGCATTCACTCTTTATAACGTTAATGTTCAAATC
GAATATGGGTAAGCTACTACTGGTCTCTGATACTATCTTTCGTTCTCACA
GACCTACTGcggaaaaattggcaaaaaaatcGTCCGCAGTGGAAAATTAA
CCTCCaacttttgtccccactgaaaacaatcaaataaaccCATTCTCGCC
gtaaaatatttactatttttcccatccccactgaattttccgactggaaa
ataaaagaattaaaatcgacagccataaaaaatatgaaaatattaatcca
catcgagtttcagtccgttatttttatctccaCCGGTCGAGAAAACTCAA
TCGACTTGGGtacttaagggaacttatttcggcgggaactaattttggcg
aattcggcgaatttagacaaagtattagttcccgccaaaatttagaaaat
tcatcaatagccaaaataatttttcgctaaaatttaaaatttttaggatt
ttttccgcccgtcaaaattagttcccaccaaaataagttcccttaaggta
atagaTATTGGGTCCTTACACGCAAACGATCAAACTAACACTAAGTTCTT
TACTTCTAATTAGAACCATATGAGGATACTTGGGTCGTTACATGGAATAC
GCCTCACAAATAAAGAAGAAGATTCCACAAACGACCGTCAAAGGGAAGAA
AGGAAGAACTAGTAAGTACTTTTCAATCTCCTACCTAGACGAAACTATCG
TCTACACATTatcactaaaaagggaataattcaggaggcgggcgataaat
ttgaaaatggaggTCAGTTCGGGCAGAGTAAACAGTGacggaggtgttta
cagtgttttGTTCCAAAGCTCTACCGCCAAtattttcccgtaaaccgcca
cGACTCTGCGCATATGtactttcccgcgtttactgaccctctaaacggac
gatagcatcgccTATCTCGTACCCAGAACTTTGGATTTACTTATGGAAGT
TGGTGAGCGCTTTCTCCTAGCCAAAGTACAATTTTtgcacaaaattttca
aaagtttataaaatcCGAGAATTATGTTCTTGTGAAACTTTCATTCATTC
GATATTGAAAAAAACTATTCTTTCAAAACATCGAGAAATATTCTTTctct
aaaatgaaaattagagAGTGACTTATTGTCTTAACGATGAATAAGCAGAT
ATAGCCCTCCTCAATCGTTAATTACTCTATGTGAATTTGGATCAACATGT
TTACCAGTTAAAATGCTATGTCATTTTCGTGATGGAGCTATCTCAATTTA
TCATTTATCTTATCATTTATAACAAAGCTAATTTGATGAGAGTTATATCT
CGTAAATTCGCTTGAAGAGTAAATCTTAGATTTGAAAATTCTAATGAATG
TATCACAGTTTATCATCAGTCAGAAGATCCTGTCCCAAACTATACATTCT
GTTCCTAACAAAAAACATATTTAAACCATGATATTTTCTCGTCATCAAAA
AATCTAATTGGGTTCGGATATTGAtaattagataaaaaattatgaTGTTT
TTCACTTTGGCCGAAAATTTCAATTGTACAAGTTTTATTTCCTTCTTACT
TCAATCAAAGACATCTTTGTTTAACTATTTAACcttactacacgtttttt
tcgtaaggaacacgtttataagcaacttgaggctgaaaatggtcccaAAA
AATACGGAATttttaaggaactgctcaggctgagaataagaaaacaagtt
aaggAAACAGTAAGGGTAAAACTTAAACTTGTACACATTTACAAAACCTA
AACAAATCCAAACTTATAGCAGCTAAGTAAACGAGAAAGTCGATAAGGAG
CTTTGAGGTTGAAACTCTCTGGAAAATCAACACTACTAGGGAATAAGACT
GGAACTATCCTTAAGTGGATTATTTtagcgtggatttaatttggcgattg
atcaattttgtgaaatttggcggggatttaatttggcgaattgggaATTT
GGAGACACTTAAATATATGAAAATTACTACAAAGTATACTAAAAAGGTGT
GGTTTTTCACATAAtactctttttgttaaatttggcgaatggccgatttt
tgaaatttcgacgaggatttaatttggcgaattttatGAAAATGCGGTTG
GCTCACTTTATAATGAAATTGTCAACCTTCATTCTTCTTGGAGGTTATcg
gatttttgacaaaaatcttatCTTTGTGTTAAACACCTAAAATTGAGAAT
CAGTCCCCTTAATAAATCAAGAACTTAATTTTTCAGAATGCAGTGCTAGG
TATTTACCATCCATTCTTCATTATTTCTTCAGGTTGCTTTGAAATTACCG
TCAACGGACAAATTGTCTTTTCCAAATTATCACAAGGGGGTTTCCCTGTG
ATGAAGAAGCTTATTCAACAAATCAAAAACGCTCAAAAGGGAAAACCCGT
CAGACAAGTCAGTAGACGACATAACGACATAACAAAGACGTTATTTTCAT
CAAGCAGTGACGACATTTGTAGATTATAGATCTCGATAGTAGCTCCTTAT
CACGTATGATTTGAGGTgacccagacggcacacaacgtcaaaacaacgtc
catgtgacattcttaacgtccaaataacgttatttgaacgttaaaacaac
gttgtgtgccagctggggattGTTTGCAACTTATAAATACAACTTTTCAG
TTCAAATGTAATCATACAAATCTTTGGAGTCATGTCTATTCAAGGATATC
TATTCTAAAGTTTAtttatcagaaattttatgcctCGGTCAACCAAGCAT
GTACCTATGACGGTTGTCAACATAAACTCCTGAATAAGCGAGGCGTTGAC
AACCCGATCTTTTTTATACATTGCAAGGAAAATCGAGGCGAAAATTATAA
TGttagggtagggcgtcaacagtcatttgtggggcaaagtcaaaaaattc
aagatgtagtgtttttttatgaaaatttaacctattgtgaggcattctgc
gcaatttttaaggtcagaagtccaaaattggccgNNNNNNNNNNNNNNNN
NNNNNNNtccaaaattggccgaacccccctgggggtactgattcgcacta
caggcaaaaattggaaaaaatggcattttctggccttttcaggcctgtaa
atatgtcaaaactattgcaaatcttatttttttcattt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017222-exon-sc0000261-1491911889:132565..133122 | TCONS_00017222-exon-sc0000261-1491911889:132565..133122 | Clytia hemisphaerica | exon |
| TCONS_00017222-exon-sc0000261-1510915933:132565..133122 | TCONS_00017222-exon-sc0000261-1510915933:132565..133122 | Clytia hemisphaerica | exon |
| TCONS_00017222-exon-sc0000261-1575043694:132565..133122 | TCONS_00017222-exon-sc0000261-1575043694:132565..133122 | Clytia hemisphaerica | exon |
| TCONS_00017222-exon-sc0000261-1491911889:133678..133775 | TCONS_00017222-exon-sc0000261-1491911889:133678..133775 | Clytia hemisphaerica | exon |
| TCONS_00017222-exon-sc0000261-1510915933:133678..133775 | TCONS_00017222-exon-sc0000261-1510915933:133678..133775 | Clytia hemisphaerica | exon |
| TCONS_00017222-exon-sc0000261-1575043694:133678..133775 | TCONS_00017222-exon-sc0000261-1575043694:133678..133775 | Clytia hemisphaerica | exon |
| TCONS_00017222-exon-sc0000261-1491911889:135397..136252 | TCONS_00017222-exon-sc0000261-1491911889:135397..136252 | Clytia hemisphaerica | exon |
| TCONS_00017222-exon-sc0000261-1510915933:135397..136252 | TCONS_00017222-exon-sc0000261-1510915933:135397..136252 | Clytia hemisphaerica | exon |
| TCONS_00017222-exon-sc0000261-1575043694:135397..136252 | TCONS_00017222-exon-sc0000261-1575043694:135397..136252 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000261 | supercontig | sc0000261:132565..136252 + |
Blast
The following BLAST results are available for this feature:
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