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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017220 ID=TCONS_00017220|Name=TCONS_00017220|organism=Clytia hemisphaerica|type=transcript|length=1636bpRun BLAST on NCBI protein sequence of TCONS_00017220-protein >TCONS_00017220-protein ID=TCONS_00017220-protein|Name=TCONS_00017220-protein|organism=Clytia hemisphaerica|type=polypeptide|length=391bp MKEKNFVVLLIVVSVASTTAAHKLHHHNHKKNFTTDFNGAPPPPGAGADLRun BLAST on NCBI transcript from alignment at sc0000261:109469..127402+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00017220 ID=TCONS_00017220|Name=TCONS_00017220|organism=Clytia hemisphaerica|type=transcript|length=17934bp|location=Sequence derived from alignment at sc0000261:109469..127402+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000261:109469..127402+ >TCONS_00017220 ID=TCONS_00017220|Name=TCONS_00017220|organism=Clytia hemisphaerica|type=CDS|length=12936bp|location=Sequence derived from alignment at sc0000261:109469..127402+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00017220 vs. Swiss-Prot (Human)
Match: MEP1A (Meprin A subunit alpha OS=Homo sapiens GN=MEP1A PE=1 SV=2) HSP 1 Score: 141.739 bits (356), Expect = 1.368e-35 Identity = 81/229 (35.37%), Postives = 118/229 (51.53%), Query Frame = 2
Query: 266 VELFEGDIIKTPRLEDEVAEMKDGSQGGLRANDAINRGQWTDGEIPYTFHSYFSSAGRSVVRKAIEVFKKHTCIKFRPRSGSDHNYVTFMHGGGCSSMIGMQGGRQQISLANGCLVTGIAVHEMMHAAGFYHEQSRRDRDQYIRINWSNINRPMWYNFQKYQSGQASTLGEAYDKKSVMHYGNYAFSINGR-KTIQS-LSNYNEVLGQRSGFSKIDIAQLNKYYNCKNT 946
++LF+GDI + S+ GLR + +WT IPY + + A E+F+ +C+ F+P G + +Y+ F GC S +G Q Q IS+ GC I HE++HA GFYHEQSR DRD Y+ I W I +NF Y + L YD +S+MHY ++F+ N TI + + +N ++GQR FS ID+ +LN+ YNC T
Sbjct: 52 LDLFQGDI------------LLQKSRNGLRDPNT----RWT-FPIPYILADNLGLNAKGAILYAFEMFRLKSCVDFKPYEG-ESSYIIFQQFDGCWSEVGDQHVGQNISIGQGCAYKAIIEHEILHALGFYHEQSRTDRDDYVNIWWDQILSGYQHNFDTYDDSLITDLNTPYDYESLMHYQPFSFNKNASVPTITAKIPEFNSIIGQRLDFSAIDLERLNRMYNCTTT 262 The following BLAST results are available for this feature:
BLAST of TCONS_00017220 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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