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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017211 ID=TCONS_00017211|Name=TCONS_00017211|organism=Clytia hemisphaerica|type=transcript|length=1714bp
GAATtcaattaatttattgttctgtAAACTTTTGTTCCCTGTTTAGAACA
TTGGAATATTATGGAGGGTAGAACGCCTATTTAAGGAGAGGGGTACAAGG
TGAGGCACTAAAACCATCTGTTCCTACGGAAGACATCCTCAAGGATTGAG
ACATTAAATTATTCGCCAAATCTTATTGGTTGGTAGAAGCTTGAGCGAAG
AAATCAATTCCGATTCTGATAGAAAATTTGGGGAGTTTCAAACGTGGAAG
CTTAGCGTATTGATTGGAAACTTGTAAACAGTCATAGGAAGTGGAACCGT
AACGAAGAAGGACGAAACTTGAAAACTTGCAGAATTGAAAGTCATAGAAT
ACGAACGAAATCAATAAATACAACATCTTCaaaacatagaaatacgatAT
ATCGAGAAGATTGTCAAATTCATTTGTAAAGAGAAGTAGTACCTgtgaaa
aacaaacattttactcaaaaaaaaagttctcaCATAAATCACACTTCGAA
AAAGCAGGGATAAACAAGGCAACTTTCAAAGTTTCAGTACAAAATACTGT
TACCTAAGACTGAGACAGGCGAGGCAAATTTGGATAATGGAGACGATGAA
TTATATTGATGGATCCTCTGAAATGGCTTTTGGAGGTCAGGAACCGTACC
CTTATACTAACTTCTTGAATAATTGTCAATACCAGGAGACGGACGATATG
AACAATAGCTATCAGTGTGCATACGGTAGCAACTACCAATCAGATTTTAG
CGATAGTTCAGAGTTAAATTGTGATGAATTTGATGATGTAGATTGCGGTG
GCATCATCAGTGGAGCCAAGAATTCGAATTCAGCTAAACTGGATCGTGTG
AAAAGGATTGTGGATAATAGTGGACGCAAGAGGCGGATTTACAGTACGAT
ACATAACGACCCGAAACAAAGCACTCGACGTTTTAGAGCCAATGACCGTG
AACGTCGGCGCATGAACTCACTCAATGGGGCCTTACAGGCTTTAAAAGGA
TGCGTACCTTCATATCATGGTAAAAAGAGACTGACTAAATTACAGATTCT
GAAATTTGCATGTCACTATATCAGTGATTTATCTGATATTTTGTGCACAG
AAGAAGATTCTAACCCGCAGACAAACTATCCTGAAATCAATAATAACATT
TCTAATACAACAGAACTCAAATCTCAAACAAACTTTAATACTGCTGATGC
ATTCTCCAACATAATGGCAGCGACAGGCGATCAACAAAGAAACATGATGG
ACCAAGAACAACAAATACAATCAATGCCAATAGACCATAATAGCGTGAAT
GGATTAAGTATGTTACAGAGACTAGAATATTTAACTTTCCATAGCTACAT
GGCTGCTATGACGGACGGTaatgaaaatctaaatttaCCGGGTGTTTCGG
ATACTTCAAGTAATCCCGATTTTTTCCCGATTAATGGAGTCGACCAGCCT
AACTTAATTTCGCCTAATAATAATCATATTTATAattattgaattaaaaa
atttaattcgattaatttcaatttcatacaatctaactttaaaagttttt
tgcatattttcaaaaaaagattcttttaaaTTATTGTCACATTCAACATA
ATTTTCAAATGCTGGGCATCGATGGCATCGAAGAATATCatagtttcaaa
ttttttacctaatttgccctaaataatattttattcaCAGAGTACTTTCC
AGGGTAgaataatt Run BLAST on NCBI protein sequence of TCONS_00017211-protein >TCONS_00017211-protein ID=TCONS_00017211-protein|Name=TCONS_00017211-protein|organism=Clytia hemisphaerica|type=polypeptide|length=301bp
METMNYIDGSSEMAFGGQEPYPYTNFLNNCQYQETDDMNNSYQCAYGSNY
QSDFSDSSELNCDEFDDVDCGGIISGAKNSNSAKLDRVKRIVDNSGRKRR
IYSTIHNDPKQSTRRFRANDRERRRMNSLNGALQALKGCVPSYHGKKRLT
KLQILKFACHYISDLSDILCTEEDSNPQTNYPEINNNISNTTELKSQTNF
NTADAFSNIMAATGDQQRNMMDQEQQIQSMPIDHNSVNGLSMLQRLEYLT
FHSYMAAMTDGNENLNLPGVSDTSSNPDFFPINGVDQPNLISPNNNHIYN
Y Run BLAST on NCBI transcript from alignment at sc0000260:346308..348021 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017211 ID=TCONS_00017211|Name=TCONS_00017211|organism=Clytia hemisphaerica|type=transcript|length=1714bp|location=Sequence derived from alignment at sc0000260:346308..348021 (Clytia hemisphaerica)
aattattcTACCCTGGAAAGTACTCTGtgaataaaatattatttagggca
aattaggtaaaaaatttgaaactatGATATTCTTCGATGCCATCGATGCC
CAGCATTTGAAAATTATGTTGAATGTGACAATAAtttaaaagaatctttt
tttgaaaatatgcaaaaaacttttaaagttagattgtatgaaattgaaat
taatcgaattaaattttttaattcaataatTATAAATATGATTATTATTA
GGCGAAATTAAGTTAGGCTGGTCGACTCCATTAATCGGGAAAAAATCGGG
ATTACTTGAAGTATCCGAAACACCCGGtaaatttagattttcattACCGT
CCGTCATAGCAGCCATGTAGCTATGGAAAGTTAAATATTCTAGTCTCTGT
AACATACTTAATCCATTCACGCTATTATGGTCTATTGGCATTGATTGTAT
TTGTTGTTCTTGGTCCATCATGTTTCTTTGTTGATCGCCTGTCGCTGCCA
TTATGTTGGAGAATGCATCAGCAGTATTAAAGTTTGTTTGAGATTTGAGT
TCTGTTGTATTAGAAATGTTATTATTGATTTCAGGATAGTTTGTCTGCGG
GTTAGAATCTTCTTCTGTGCACAAAATATCAGATAAATCACTGATATAGT
GACATGCAAATTTCAGAATCTGTAATTTAGTCAGTCTCTTTTTACCATGA
TATGAAGGTACGCATCCTTTTAAAGCCTGTAAGGCCCCATTGAGTGAGTT
CATGCGCCGACGTTCACGGTCATTGGCTCTAAAACGTCGAGTGCTTTGTT
TCGGGTCGTTATGTATCGTACTGTAAATCCGCCTCTTGCGTCCACTATTA
TCCACAATCCTTTTCACACGATCCAGTTTAGCTGAATTCGAATTCTTGGC
TCCACTGATGATGCCACCGCAATCTACATCATCAAATTCATCACAATTTA
ACTCTGAACTATCGCTAAAATCTGATTGGTAGTTGCTACCGTATGCACAC
TGATAGCTATTGTTCATATCGTCCGTCTCCTGGTATTGACAATTATTCAA
GAAGTTAGTATAAGGGTACGGTTCCTGACCTCCAAAAGCCATTTCAGAGG
ATCCATCAATATAATTCATCGTCTCCATTATCCAAATTTGCCTCGCCTGT
CTCAGTCTTAGGTAACAGTATTTTGTACTGAAACTTTGAAAGTTGCCTTG
TTTATCCCTGCTTTTTCGAAGTGTGATTTATGtgagaactttttttttga
gtaaaatgtttgtttttcacAGGTACTACTTCTCTTTACAAATGAATTTG
ACAATCTTCTCGATATatcgtatttctatgttttGAAGATGTTGTATTTA
TTGATTTCGTTCGTATTCTATGACTTTCAATTCTGCAAGTTTTCAAGTTT
CGTCCTTCTTCGTTACGGTTCCACTTCCTATGACTGTTTACAAGTTTCCA
ATCAATACGCTAAGCTTCCACGTTTGAAACTCCCCAAATTTTCTATCAGA
ATCGGAATTGATTTCTTCGCTCAAGCTTCTACCAACCAATAAGATTTGGC
GAATAATTTAATGTCTCAATCCTTGAGGATGTCTTCCGTAGGAACAGATG
GTTTTAGTGCCTCACCTTGTACCCCTCTCCTTAAATAGGCGTTCTACCCT
CCATAATATTCCAATGTTCTAAACAGGGAACAAAAGTTTacagaacaata
aattaattgaATTC Coding sequence (CDS) from alignment at sc0000260:346308..348021 >TCONS_00017211 ID=TCONS_00017211|Name=TCONS_00017211|organism=Clytia hemisphaerica|type=CDS|length=906bp|location=Sequence derived from alignment at sc0000260:346308..348021 (Clytia hemisphaerica)
tcaataatTATAAATATGATTATTATTAGGCGAAATTAAGTTAGGCTGGT
CGACTCCATTAATCGGGAAAAAATCGGGATTACTTGAAGTATCCGAAACA
CCCGGtaaatttagattttcattACCGTCCGTCATAGCAGCCATGTAGCT
ATGGAAAGTTAAATATTCTAGTCTCTGTAACATACTTAATCCATTCACGC
TATTATGGTCTATTGGCATTGATTGTATTTGTTGTTCTTGGTCCATCATG
TTTCTTTGTTGATCGCCTGTCGCTGCCATTATGTTGGAGAATGCATCAGC
AGTATTAAAGTTTGTTTGAGATTTGAGTTCTGTTGTATTAGAAATGTTAT
TATTGATTTCAGGATAGTTTGTCTGCGGGTTAGAATCTTCTTCTGTGCAC
AAAATATCAGATAAATCACTGATATAGTGACATGCAAATTTCAGAATCTG
TAATTTAGTCAGTCTCTTTTTACCATGATATGAAGGTACGCATCCTTTTA
AAGCCTGTAAGGCCCCATTGAGTGAGTTCATGCGCCGACGTTCACGGTCA
TTGGCTCTAAAACGTCGAGTGCTTTGTTTCGGGTCGTTATGTATCGTACT
GTAAATCCGCCTCTTGCGTCCACTATTATCCACAATCCTTTTCACACGAT
CCAGTTTAGCTGAATTCGAATTCTTGGCTCCACTGATGATGCCACCGCAA
TCTACATCATCAAATTCATCACAATTTAACTCTGAACTATCGCTAAAATC
TGATTGGTAGTTGCTACCGTATGCACACTGATAGCTATTGTTCATATCGT
CCGTCTCCTGGTATTGACAATTATTCAAGAAGTTAGTATAAGGGTACGGT
TCCTGACCTCCAAAAGCCATTTCAGAGGATCCATCAATATAATTCATCGT
CTCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017211-exon-sc0000260-1491911889:346308..348021 | TCONS_00017211-exon-sc0000260-1491911889:346308..348021 | Clytia hemisphaerica | exon |
| TCONS_00017211-exon-sc0000260-1510915933:346308..348021 | TCONS_00017211-exon-sc0000260-1510915933:346308..348021 | Clytia hemisphaerica | exon |
| TCONS_00017211-exon-sc0000260-1575043694:346308..348021 | TCONS_00017211-exon-sc0000260-1575043694:346308..348021 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000260 | supercontig | sc0000260:346308..348021 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR011598 | bHLH_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0046983 | protein dimerization activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0046983 |
protein dimerization activity |
Blast
The following BLAST results are available for this feature:
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