TCONS_00017147 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017147
Unique NameTCONS_00017147
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length372

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017147 ID=TCONS_00017147|Name=TCONS_00017147|organism=Clytia hemisphaerica|type=transcript|length=372bp
CATCTTTCGAGCTCGTTACACCATCTTTCGAACTCGTTACACCATCTTTC
GAGCTTGTTGCATCATCTTTCGAACTCGTTACACCATCTTTCGAGCTCGT
TACACCATCTTTCGAACTCGTTACACCATCTTTCGAGCTTGTTGCATCAT
CTTTCGAACTCGTTACATCATCTTTCGAACTCGTTTCATCATCTTTCGAA
CTCGTTACATCATCTTTCGAACTCGTTACACCATCTTTCGAACTCGTTAC
ATCATCTTTCGAGCTTATTACGTTGTCTTTATCGACTTTCCACTGATCAC
TGTCGCCCTCATTATTCCTAATCACTTCTTtggattttgataattttgtt
ttttgactAACTCCGTTTTCat
Run BLAST on NCBI

transcript from alignment at sc0000260:84330..84764+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017147 ID=TCONS_00017147|Name=TCONS_00017147|organism=Clytia hemisphaerica|type=transcript|length=435bp|location=Sequence derived from alignment at sc0000260:84330..84764+ (Clytia hemisphaerica)
CATCTTTCGAGCTCGTTACACCATCTTTCGAACTCGTTACACCATCTTTC
GAGCTTGTTGCATCATCTTTCGAACTCGTTACACCATCTTTCGAGCTCGT
TACACCATCTTTCGAACTCGTTACACCATCTTTCGAGCTTGTTGCATCAT
CTTTCGAACTCGTTACATCATCTTTCGAACTCGTTTCATCATCTTTCGAA
CTCGTTACACCATCTTTCGAGCTTGTTGCATCATCTTTCGAACTCGTTAC
ATCATCTTTCGAACTCGTTACATCATCTTTCGAACTCGTTACACCATCTT
TCGAACTCGTTACATCATCTTTCGAGCTTATTACGTTGTCTTTATCGACT
TTCCACTGATCACTGTCGCCCTCATTATTCCTAATCACTTCTTtggattt
tgataattttgttttttgactAACTCCGTTTTCat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009596XLOC_009596Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017147-exon-sc0000260-1491911889:84330..84516TCONS_00017147-exon-sc0000260-1491911889:84330..84516Clytia hemisphaericaexon
TCONS_00017147-exon-sc0000260-1510915933:84330..84516TCONS_00017147-exon-sc0000260-1510915933:84330..84516Clytia hemisphaericaexon
TCONS_00017147-exon-sc0000260-1575043694:84330..84516TCONS_00017147-exon-sc0000260-1575043694:84330..84516Clytia hemisphaericaexon
TCONS_00017147-exon-sc0000260-1491911889:84580..84764TCONS_00017147-exon-sc0000260-1491911889:84580..84764Clytia hemisphaericaexon
TCONS_00017147-exon-sc0000260-1510915933:84580..84764TCONS_00017147-exon-sc0000260-1510915933:84580..84764Clytia hemisphaericaexon
TCONS_00017147-exon-sc0000260-1575043694:84580..84764TCONS_00017147-exon-sc0000260-1575043694:84580..84764Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000260supercontigsc0000260:84330..84764 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.217655	0.0853153	0	0	0	0	5.79176	2.16375	0	0.681562	0	1.21974	0.512319	0.235645	0	0.987373	1.91373	0	0	0	0	0	0.300938	2.896	3.47211	8.93525	1.19379	0	0	0.0989353
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017147 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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