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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017116 ID=TCONS_00017116|Name=TCONS_00017116|organism=Clytia hemisphaerica|type=transcript|length=3717bp
TTGTTCctattgttttcaatttttttttgcgataGAATAAACGAATCAAT
TTGAACGACATAAGAAGGACTATAAGACATTTGTTAAAGACAGTATGACA
GAGACATCAAAAGCATAAACATTGCGAACTTGAAATCCATGTGAACTCGC
TGTATAGCGGTGGTCTATTTTATACAATTACATGAACAGTTAAAGAGAAA
TTATTATAACTCCAtacattttaatttattttgtgaaaagagaagaaaaa
cttatttatttatcaatCATACCTTCATCGATTAAATTTACAGAAATGTC
TACCGCGTTAGTATCAGCATTCTACGACTTCAATGATGTTATTCAACAAC
AGagCAAGCAACGACCAGCCATGTTAGATCTGCGTCAGCGACCACTAGAA
CAACGAAAACCAAGTAACTTATTGATATCTCGACGACACTCAACGAATTC
TACAAATTTGAATAGTTTGGCTTCACCATCATTCACCAAAACAAACCCGC
TCTCACCATCTTCGAGCAGTTTCTTTCCAATGCCATCGTCACCTAAAGAC
CCCTTTTTGAACGGTTGTGGTTCAACCTTAGCATCTGCTCTCAACATGCG
GGAACGTGCTCAAAGTGCAAGCTTCCAAGAAGAACTCGACGCACAACACC
GTAAACGTAGCGGTACAAACTCAAGCCGTTACAAGACAGAACTTTGTCGT
CCATTCGAAGAAAATGGTACCTGTAAATATGGAGACAAGTGCCAATTTGC
ACATGGCTATCACGAACTTCGTGGCTTAAACCGTCACCCAAAATACAAGA
CCGAATTTTGTCGTACTTATCACACTATCGGATTCTGTCCATACGGTCCG
CGTTGTCACTTCATTCATAATGATGAGGAGAAACGTTTGGCTCAAGCAAG
CACTGGCCGATCTGTTTCCATGTCCAGCATGGATTCAGCTCCCTCCTCTC
CAGTCATTGACTTCGCTCCTTCACCATTCAGCAACACACCACCTACCTCC
CCTGGAGTTGGAGACGTCTTTGTTTTTGACGAACCAACTGCTCAACAAAA
CCTTCCATCCATGAAATCATCCCTGGCGAGTATGTCAACCATTCCGGAGA
TATCATCTCACCAGTTTGTACCGAACCACATCACTCGTAGCATCTCAGTT
TCATCAGCTCTTCCCTCCAAAACACCTTCACCACCTAACCTCACTATTTC
AAGCTTAATCACTGAAGGCACACGGATCGAATCCAGACCAAACACTTTCC
AACCCATTCAAATGAAATTGGACGAACGCAACATTTTGACTCCATCTGAT
TCGGGATCATCCAACCCACCCTCTCCTACCGACTCTTTGGATGGCTCCAA
CCGACGTCGCTTGCCTGTTTTTGGACTCATGAAACAATAAATGGTATGTT
GACACTTGAGTGTGTGAGAGAAAAGAGGAATTTTCCCTCTGAAAACCAAA
GTGTGAGAGCTAGATaagaaaaaacttaaattattaCTATATTATTAACt
ataaatacttttttttttggaaatatgtgTCTATTTTGTCCGGTGTGTTA
TAACGAAAAAGCTTTTATGGTGATTGATACCCTTTTTACTTGAGGTCTCT
TATTGAGTGAAGTGAGCTAAGGAGCGTTGTGAGCAAAAAGGAAAgttatt
ttttctatattttttgtttttttctggacTTTAAGGATTTATAAAATGTa
tattttatcgaaaaatttttatatatatagtcttattattattattatta
ttattactataGCTATGTTATTTAGTTTTCAAActagaaaaaaaggtaaa
agcatttttttttgatttgttatATTGTATAAGATATGGTATGACAATTT
CTAtagcatttttttcaaactgtaaaTATGATTTTCAGCAAacacatcca
aattttttttgttctagattttgttttatttgttcaaattttattCTGCC
TTCTCTCGATAGTCTGGAAGCCCTTCATTTGAGCTGGTTATTTTTTCCTG
GATTTCTCATTCTGTCTAAATTGGATTGACTGGACTTTTTTTCGAGAGTT
GAAGGGTTTTCTTTGATCGTGTTTTTTAAAATCTTGGCGGAGTTTTCTCA
TAGAAATTTTTCAACGAGAGAACTTTTTTGGACAGAGTATTTTCTCTTCA
GCCCAAACGtcttatttatatttatatatattatataattttttgtttaa
atttttgaaattggtcCCCTAGATTTagaaaaaagaaggaaaaacagGAT
CTCTATTCTGTCAAAGTTGGTTTTTTTATACTTATTGATATTAGAGAgaa
cttgttttttattttaagtttattatatattttaaatTAATATTATATAA
ACCCTTTTTGAAGGTTTAGGTTTCAGTGATAGTCAAAGTTTGTCTGTCTA
GAAGCttattatctttaaaaaaagggccaGGATAACTTAAGTTTTCCTCG
TGTTCTACGCGTAATAaccaatttataattttttttatctccatcaaaaa
tcaaaagtggAAATGAGAAATAGCATTTTCTGATAAGGTAATTGCCTTTC
TTGAGATTTTTTCAAACTGATTTTGTGTTCTCATTGTTAAAGTGATAAAG
CAATGTAAGGCATACTACAAGATTCAGGATAAAAAACCTGTTTGAACAAA
ATGGCTTAGCttgtttttataatttataagaactatTGTTTATGTTTTGA
AGTAGGATTTCGAGTAGGGTTTTGTCAAAGTTCAATCCATTCACGACACT
AAGAGAGGGAGAGAGAGTTTCTCTTCTATGGCTCCTTTGAGTCTAGCAGA
TAACAAGTTTTTAATTAcaaacaattaaataaaaagCGGCGATGAAAGGT
TGCTTTATATAAATTGATAACGAGGAAACGCGAAACCTAATTAAGCCGTT
TTGTTTTCGACATGAGTTGAAAAGTGTTTATTCACCCACAAGGAAAGCAT
GTTTTCCCTAcgtcaaagaaaaaaaagtccCCCTGTATAAATTTGCTTTA
TTTCCCTAATGTGTTCATGAAGTTAAATTAATGACACTTTTATAATCAAT
TGATTTGggagaaatttcgaaaattccttattttagttGTATAAACAATA
GCTTTtccctttttattgaaaattataaTGGATTTTGGGAACGATTTTTG
aggtttcttttttttcgaaataaaaCGTGTTTTTGTTTGGGAGAATTTCG
TTTTATTGTGAGCCTTGAAAACGTGCTTTCTTTGGTGTGACGTCAAAAGC
CTTGATCCCTCTATTGGATAACCTAATCTATTTTGCAGTTGAGAATTAAT
ATTCATAAAAAGAATGAGAAAACCTTTTTGGAATCTGTAGTCTTTTCCTG
ATAAACACTTTATCAATAGAACCTCTTTTAAATTATATTGATATTATTTT
TGGAGAgattaaaatttataaatttttgaaacatcGATATTCAGAAATGT
CATGCGcgttgtttttttgtttatttaaaatatattgttttatttatttg
acaCAAACCCCCTCCCATNGATATTCAGAAATGTCATGCGCgctgttttt
ttgtttatttaaaatatattgttttatttatttgacaCAAACCCCCTCCC
ATCattgtaatatattttttgttgttaaattgctttaagaaaaactttaa
tattttaaaattttttgtgtaaaagagattgatttaatttaaaaataata
cttttcctttacaatga Run BLAST on NCBI transcript from alignment at sc0000259:173325..177697- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017116 ID=TCONS_00017116|Name=TCONS_00017116|organism=Clytia hemisphaerica|type=transcript|length=4373bp|location=Sequence derived from alignment at sc0000259:173325..177697- (Clytia hemisphaerica)
TTGTTCCTATTGTTTTCAATTTTTTTTTGCGATAGAATAAACGAATCAAT
TTGAACGACATAAGAAGGACTATAAGACATTTGTTAAAGACAGTATGACA
GAGACATCAAAAGCATAAACATTGCGAACTTGAAATCCATGTGAACTCGC
TGTATAGCGGTGGTCTATTTTATACAATTACATGAACAGTTAAAGAGAAA
TTATTATAACTCCATACATTTTAATTTATTTTGTGAAAAGAGAAGAAAAA
CTTATTTATTTATCAATCATACCTTCATCGATTAAATTTACAGAAATGTC
TACCGCGTTAGTATCAGCATTCTACGACTTCAATGATGTTATTCAACAAC
AGGTTTGTCAATATAAATCTTTTCCTCTTTCACTATCTTACTAATTTTTT
TGTGTTTTTGTTCAGGATAGTGGCTTTTTGAACTTTCATTTTCACTTTTA
GACTTTGTAAGTTTTTAAACTTTTGAAAAAAAAATTTGACATGAATTTTT
TCTCTTGTCATTTTATTAGAGCTATGATACATATAACTTTTGGTTATGAG
CTAGCGGTTTTCACAATTCATGTAACTTTATATGAACATCGTTTAGATTA
AAATTTGTGTGTTTTAAAATGCATTTTTTCTCTCAGTTATCTGTGGGAAC
ATCTCATTTCTTTTCTCTTCAATAACTTTACTTGTTTGTGCGGACTTAAT
CATTTTTTTTTTACTAAATGGGTTATTCATCCTCGAAATAATTTCATGAT
AAGTGTTTTTTTGTCTCTTGAGGCGATAAGCCTACTTTCTTTTTATAAAA
CACATGAAAAAATCGATCATTTTTTTATATGTGTGTTGTTCCATGTTTAT
CTCACAGAAAAATAAGAAATCAGAGATATGATGAGAAAAAGTTTGTCTAA
AGTTTTAAATGTAGAGCAAACGTATTTGATTTAAAAATATAGTAAATGTA
TTTTGAACTTCTTATTTCTTTTGATTCAAACTGATGATTTATTTGTTTAT
ATTTTTAGAGCAAGCAACGACCAGCCATGTTAGATCTGCGTCAGCGACCA
CTAGAACAACGAAAACCAAGTAACTTATTGATATCTCGACGACACTCAAC
GAATTCTACAAATTTGAATAGTTTGGCTTCACCATCATTCACCAAAACAA
ACCCGCTCTCACCATCTTCGAGCAGTTTCTTTCCAATGCCATCGTCACCT
AAAGACCCCTTTTTGAACGGTTGTGGTTCAACCTTAGCATCTGCTCTCAA
CATGCGGGAACGTGCTCAAAGTGCAAGCTTCCAAGAAGAACTCGACGCAC
AACACCGTAAACGTAGCGGTACAAACTCAAGCCGTTACAAGACAGAACTT
TGTCGTCCATTCGAAGAAAATGGTACCTGTAAATATGGAGACAAGTGCCA
ATTTGCACATGGCTATCACGAACTTCGTGGCTTAAACCGTCACCCAAAAT
ACAAGACCGAATTTTGTCGTACTTATCACACTATCGGATTCTGTCCATAC
GGTCCGCGTTGTCACTTCATTCATAATGATGAGGAGAAACGTTTGGCTCA
AGCAAGCACTGGCCGATCTGTTTCCATGTCCAGCATGGATTCAGCTCCCT
CCTCTCCAGTCATTGACTTCGCTCCTTCACCATTCAGCAACACACCACCT
ACCTCCCCTGGAGTTGGAGACGTCTTTGTTTTTGACGAACCAACTGCTCA
ACAAAACCTTCCATCCATGAAATCATCCCTGGCGAGTATGTCAACCATTC
CGGAGATATCATCTCACCAGTTTGTACCGAACCACATCACTCGTAGCATC
TCAGTTTCATCAGCTCTTCCCTCCAAAACACCTTCACCACCTAACCTCAC
TATTTCAAGCTTAATCACTGAAGGCACACGGATCGAATCCAGACCAAACA
CTTTCCAACCCATTCAAATGAAATTGGACGAACGCAACATTTTGACTCCA
TCTGATTCGGGATCATCCAACCCACCCTCTCCTACCGACTCTTTGGATGG
CTCCAACCGACGTCGCTTGCCTGTTTTTGGACTCATGAAACAATAAATGG
TATGTTGACACTTGAGTGTGTGAGAGAAAAGAGGAATTTTCCCTCTGAAA
ACCAAAGTGTGAGAGCTAGATAAGAAAAAACTTAAATTATTACTATATTA
TTAACTATAAATACTTTTTTTTTTGGAAATATGTGTCTATTTTGTCCGGT
GTGTTATAACGAAAAAGCTTTTATGGTGATTGATACCCTTTTTACTTGAG
GTCTCTTATTGAGTGAAGTGAGCTAAGGAGCGTTGTGAGCAAAAAGGAAA
GTTATTTTTTCTATATTTTTTGTTTTTTTCTGGACTTTAAGGATTTATAA
AATGTATATTTTATCGAAAAATTTTTATATATATAGTCTTATTATTATTA
TTATTATTATTACTATAGCTATGTTATTTAGTTTTCAAACTAGAAAAAAA
GGTAAAAGCATTTTTTTTTGATTTGTTATATTGTATAAGATATGGTATGA
CAATTTCTATAGCATTTTTTTCAAACTGTAAATATGATTTTCAGCAAACA
CATCCAAATTTTTTTTGTTCTAGATTTTGTTTTATTTGTTCAAATTTTAT
TCTGCCTTCTCTCGATAGTCTGGAAGCCCTTCATTTGAGCTGGTTATTTT
TTCCTGGATTTCTCATTCTGTCTAAATTGGATTGACTGGACTTTTTTTCG
AGAGTTGAAGGGTTTTCTTTGATCGTGTTTTTTAAAATCTTGGCGGAGTT
TTCTCATAGAAATTTTTCAACGAGAGAACTTTTTTGGACAGAGTATTTTC
TCTTCAGCCCAAACGTCTTATTTATATTTATATATATTATATAATTTTTT
GTTTAAATTTTTGAAATTGGTCCCCTAGATTTAGAAAAAAGAAGGAAAAA
CAGGATCTCTATTCTGTCAAAGTTGGTTTTTTTATACTTATTGATATTAG
AGAGAACTTGTTTTTTATTTTAAGTTTATTATATATTTTAAATTAATATT
ATATAAACCCTTTTTGAAGGTTTAGGTTTCAGTGATAGTCAAAGTTTGTC
TGTCTAGAAGCTTATTATCTTTAAAAAAAGGGCCAGGATAACTTAAGTTT
TCCTCGTGTTCTACGCGTAATAACCAATTTATAATTTTTTTTATCTCCAT
CAAAAATCAAAAGTGGAAATGAGAAATAGCATTTTCTGATAAGGTAATTG
CCTTTCTTGAGATTTTTTCAAACTGATTTTGTGTTCTCATTGTTAAAGTG
ATAAAGCAATGTAAGGCATACTACAAGATTCAGGATAAAAAACCTGTTTG
AACAAAATGGCTTAGCTTGTTTTTATAATTTATAAGAACTATTGTTTATG
TTTTGAAGTAGGATTTCGAGTAGGGTTTTGTCAAAGTTCAATCCATTCAC
GACACTAAGAGAGGGAGAGAGAGTTTCTCTTCTATGGCTCCTTTGAGTCT
AGCAGATAACAAGTTTTTAATTACAAACAATTAAATAAAAAGCGGCGATG
AAAGGTTGCTTTATATAAATTGATAACGAGGAAACGCGAAACCTAATTAA
GCCGTTTTGTTTTCGACATGAGTTGAAAAGTGTTTATTCACCCACAAGGA
AAGCATGTTTTCCCTACGTCAAAGAAAAAAAAGTCCCCCTGTATAAATTT
GCTTTATTTCCCTAATGTGTTCATGAAGTTAAATTAATGACACTTTTATA
ATCAATTGATTTGGGAGAAATTTCGAAAATTCCTTATTTTAGTTGTATAA
ACAATAGCTTTTCCCTTTTTATTGAAAATTATAATGGATTTTGGGAACGA
TTTTTGAGGTTTCTTTTTTTTCGAAATAAAACGTGTTTTTGTTTGGGAGA
ATTTCGTTTTATTGTGAGCCTTGAAAACGTGCTTTCTTTGGTGTGACGTC
AAAAGCCTTGATCCCTCTATTGGATAACCTAATCTATTTTGCAGTTGAGA
ATTAATATTCATAAAAAGAATGAGAAAACCTTTTTGGAATCTGTAGTCTT
TTCCTGATAAACACTTTATCAATAGAACCTCTTTTAAATTATATTGATAT
TATTTTTGGAGAGATTAAAATTTATAAATTTTTGAAACATCGATATTCAG
AAATGTCATGCGCGTTGTTTTTTTGTTTATTTAAAATATATTGTTTTATT
TATTTGACACAAACCCCCTCCCATNGATATTCAGAAATGTCATGCGCGCT
GTTTTTTTGTTTATTTAAAATATATTGTTTTATTTATTTGACACAAACCC
CCTCCCATCATTGTAATATATTTTTTGTTGTTAAATTGCTTTAAGAAAAA
CTTTAATATTTTAAAATTTTTTGTGTAAAAGAGATTGATTTAATTTAAAA
ATAATACTTTTCCTTTACAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017116-exon-sc0000259-1575043694:177346..177697 | TCONS_00017116-exon-sc0000259-1575043694:177346..177697 | Clytia hemisphaerica | exon |
| TCONS_00017116-exon-sc0000259-1575043694:173325..176689 | TCONS_00017116-exon-sc0000259-1575043694:173325..176689 | Clytia hemisphaerica | exon |
| TCONS_00017116-exon-sc0000259-1510915933:177346..177697 | TCONS_00017116-exon-sc0000259-1510915933:177346..177697 | Clytia hemisphaerica | exon |
| TCONS_00017116-exon-sc0000259-1510915933:173325..176689 | TCONS_00017116-exon-sc0000259-1510915933:173325..176689 | Clytia hemisphaerica | exon |
| TCONS_00017116-exon-sc0000259-1491911889:177346..177697 | TCONS_00017116-exon-sc0000259-1491911889:177346..177697 | Clytia hemisphaerica | exon |
| TCONS_00017116-exon-sc0000259-1491911889:173325..176689 | TCONS_00017116-exon-sc0000259-1491911889:173325..176689 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000259 | supercontig | sc0000259:173325..177697 - |
Blast
BLAST of TCONS_00017116 vs. Swiss-Prot (Human)
Match: TISB (mRNA decay activator protein ZFP36L1 OS=Homo sapiens GN=ZFP36L1 PE=1 SV=1) HSP 1 Score: 159.844 bits (403), Expect = 5.891e-42 Identity = 74/103 (71.84%), Postives = 80/103 (77.67%), Query Frame = 2
Query: 596 MRERAQSASFQEELDAQHRKRSG-TNSSRYKTELCRPFEENGTCKYGDKCQFAHGYHELRGLNRHPKYKTEFCRTYHTIGFCPYGPRCHFIHNDEEKR-LAQA 898
R+R+ S + L Q + G NSSRYKTELCRPFEENG CKYGDKCQFAHG HELR L RHPKYKTE CRT+HTIGFCPYGPRCHFIHN EE+R LA A
Sbjct: 86 FRDRSFSEGGERLLPTQKQPGGGQVNSSRYKTELCRPFEENGACKYGDKCQFAHGIHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNAEERRALAGA 188
The following BLAST results are available for this feature:
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