TCONS_00017111 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017111
Unique NameTCONS_00017111
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1403

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017111 ID=TCONS_00017111|Name=TCONS_00017111|organism=Clytia hemisphaerica|type=transcript|length=1403bp
GTTGTGGTGTTGATTAAACCTCTCCTTCAAAATCTTGACATCAAAAAGTG
AATAATCTCAAAAAAATACTATAACACAAACATTACGCAGTTTTCAAACG
ATCCAGGAGAGAAAATGGTGACGAATTTAAAAAGGTGGAATTGCTTTACA
ATATCATTACTATTGCCATACTTTGCCACCGTCAACCAAGAAGTTTACGC
CGTTAGTTTGGAAGAAATCGAAAACAGTTGgcacaaaacaacaacaaaaa
taatcCAAACGACCACAGCAACGATCAAACTTAAAATCCAACGATACAAA
GCATTCCCAAATCAAATGACTCGGGCTGGAGgttacaaaaatgaaaagaa
tcgATACACAATGAGAACATGTGCGGAGAAATGTACATCTGAAGCAACAT
GCGCAAGTTTTAGTTATGAGTTACCTGGTACTAACTGCAGAAGATTTTCA
GGTGTTTATGCTAATTCACAATCATCAGCTATATATACTGGTGGTAATGT
TCAATTCTTTGAGAAATTAAATCCTTGTAATAAGATACGAAATTTATGTG
AACATGGGAGTGAATGTGTACCTGATATCTTATCAAAGTCATATTCTTGT
ATCAATTGTTTTTCACCTTACACTGGTAAACATTGCAACGAATCCGGACC
AGTTCACAACCCAAACATCTCTGAAGATATTTTATATGGACGAAATGCAT
CGTGCcgtgatttgaaaaaaaatttccagaatTATATGGCAGGTATGTAT
TGGATTCACCCATGGAGAGATACAAGGAAAATCAAAGTAAACTGCAATTT
CGATGGTACAATGTTTATAACATCGATAATAAAAGATGATCCAAGTCCAA
TCCGGGAATTATTTGCAGAGGACCTTGAAGATGGATTAAATATATATGAT
GGCAACTTCAGAGCACATCCATCTTTCGCTAGTAAACTCGAAAAACTAAT
TCGCTTCGATTTCTTGAAATTcaaatgccaaaaaactggtgTTGGATTTG
AAGTAAAAATCAAATCATTCAAATTGCACGAATGCTACAATGTTATGTTC
TATTTTCTTGGGGAAGCAACAATCGCAGACTCATCAAAATATTGTTTAAG
AGGAAACTATAAATATACCAGTGCTTTGTATAATGAATGGCCTACAAAAG
GTGTGCCGGCAGACCTTAGGctatttaaagatattttaataaaagacGAT
TCAACCAAGATGACTTTTACGAATGATTCAATGCAGTGTTTTGGTGATGA
AGGAACTtgggatttttttaatttgaatatcGTATAAAATAATCATCTGA
ATGTTTATTTTCAATAGCTGAGCACTTATTTTAACACAGCATAGATATTT
TGGTTCATGACAGTTTCGTGACAGTACTTAAATCTTAGTCAACACGAgcc
agt
Run BLAST on NCBI

protein sequence of TCONS_00017111-protein

>TCONS_00017111-protein ID=TCONS_00017111-protein|Name=TCONS_00017111-protein|organism=Clytia hemisphaerica|type=polypeptide|length=390bp
MVTNLKRWNCFTISLLLPYFATVNQEVYAVSLEEIENSWHKTTTKIIQTT
TATIKLKIQRYKAFPNQMTRAGGYKNEKNRYTMRTCAEKCTSEATCASFS
YELPGTNCRRFSGVYANSQSSAIYTGGNVQFFEKLNPCNKIRNLCEHGSE
CVPDILSKSYSCINCFSPYTGKHCNESGPVHNPNISEDILYGRNASCRDL
KKNFQNYMAGMYWIHPWRDTRKIKVNCNFDGTMFITSIIKDDPSPIRELF
AEDLEDGLNIYDGNFRAHPSFASKLEKLIRFDFLKFKCQKTGVGFEVKIK
SFKLHECYNVMFYFLGEATIADSSKYCLRGNYKYTSALYNEWPTKGVPAD
LRLFKDILIKDDSTKMTFTNDSMQCFGDEGTWDFFNLNIV
Run BLAST on NCBI

transcript from alignment at sc0000259:5469..8560-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017111 ID=TCONS_00017111|Name=TCONS_00017111|organism=Clytia hemisphaerica|type=transcript|length=3092bp|location=Sequence derived from alignment at sc0000259:5469..8560- (Clytia hemisphaerica)
GTTGTGGTGTTGATTAAACCTCTCCTTCAAAATCTTGACATCAAAAAGTG
AATAATCTCAAAAAAATACTATAACACAAACATTACGCAGTTTTCAAACG
ATCCAGGAGAGAAAATGGTGACGAATTTAAAAAGGTGGAATTGCTTTACA
ATATCATTACTATTGCCATACTTTGCCACCGTCAACCAAGAAGTTTACGC
CGTTAGTTTGGAAGAAATCGAAAACAGTTGGCACAAAACAACAACAAAAA
TAATCCAAACGACCACAGCAACGATCAAACTTAAAATCCAACGATACAAA
GCATTCCCAAATCAAATGACTCGGGCTGGAGGTTACAAAAATGAAAAGAA
TCGATACACAATGAGAACATGTGCGGAGAAATGTACATCTGAAGCAACAT
GCGCAAGTTTTAGTTATGAGTTACCTGGTACTAACTGCAGAAGATTTTCA
GGTGTTTATGCTAATTCACAATCATCAGCTATATATACTGGTGGTAATGT
TCAATTCTTTGAGAAATTAAATCCTTGTAATAAGATACGAAATTTATGTG
AACATGGGAGTGAATGTGTACCTGATATCTTATCAAAGTCATATTCTTGT
ATCAATTGTTTTTCACCTTACACTGGTAAACATTGCAACGAATCCGGACC
AGTTCACAACCCAAACATCTCTGAAGGTAATTATGAATTAAATTATCTCT
GAAGGTATTTAAAGACTGGCATCCTAATCTAATCTGTTCATTTATCACGT
CAGAGGGTGGCAGGCATTTGCTAGAATAGGAGCTGCGTAGGAGAATAAGC
AAAAGTTGATGAGAGGGTGCTGATTAACATTGTACATTCAAGCCCTCCCG
CTGACAAACTTTCTTCCCACGCTAACCTAACTCCAACGCTCACTTTTCCC
GCGTGATATCGTTCCAGACCAACTGGCGCGTTATCTGGTACCAGATGTGG
AAATATGCTACGGTAATTGAAGCTCACCAGTAGACCTTTTATAAATAGAA
CCGCGACGCTTAAGTACCTTGCTTTTACATATTGTCATGGCAATTTTGAG
CTTGCCGTATTAAAGAAGTAAGTAAATAAAGTACTTGTTTTAGGTTAAAC
TTGTTCCTTTTTAATAGATATTTTATATGGACGAAATTCATCGTGCCGTG
ATTTGAAAAAAAATTTNACGCTAACCTAACTCCAACACTCACTTTTCCCG
CGTGATAGCGTTCCAGACCAACTGGCGCGTTATCTGGTACCAGATGTGGA
AATATGCTACGGTAATTTAAGCTCACCAGTAGACATTTTATAAATAAAAC
CGCGACGCTTAAGTACCTTGCTTTTACATATTGTCATGGCAATTTTGAGC
TAGCCGTATTAAAGAATTAAGTAAATAAAGTACTTGTTTTAGGTTAAACT
TGTTCCTTTTTCTCAATAGATATTTTATATGGACGAAATGCATCGTGCCG
TGATTTGAAAAAAAATTTCCAGAATTATATGGCAGGTATGTATTGGATTC
ACCCATGGAGAGATACAAGGAAAATCAAAGTAAACTGCAGTAAGTGTTTT
GGTTCTTTGTTATTACTAACCAATATGATCAAATCATTTCTTTTCTCCCT
TTACATAATTCTGCCCAACATAAAGAGACTTGAAGAGGTGGATGAAATCA
AACGTTCTGACGGTTGAGCCATACTGTATTCCGTATAAAAAACCCCGGTC
TGGAAGCATTTTGTTTCTTTCCAGTGTTCCTTACTTGAACTTACGTTAAG
AAATTAAAGTCTATTCAAGATAAGTGTGCACTAAATTTTGCTTTGCTTGT
TATTTCTCAACCAATGCTTCAATCTTAAAAAGTTTGGTATTGTTGGGAAG
GTAGGAAGGAGCTTATTAATTTACTGTTAGTTTTTTTCCGTGAAATTTGA
AAAGAACATGAAGAAAAATGAAGAGGCAAAAATTTAACTTTTTATAGATA
GTTCGTATAAACGTTATTTTTATAATTAAAATAATTAAAAATTTGCAATA
TTCGACGGATAAGATAAGAAACCACTTTGTCAACCCCGGAATTTTACATT
GTGTAAGAAATGTCTTTTCAGAAAAATCAGTAAATCTACTTTACATTCTG
TCTGGAACCAGGGTCTTTTATACGCGGACTATGGTTAAGCGTTCAGAGAA
AAACGGAAGCGTGCTAGTAAAATAAATGTCCAAATAACATTCCGTAAATC
CAGGCAATGTAGATGAACATTGACCCAAAGTAAAAAGCCTCTTCCAGAAA
AAAGAATTACACCATGGGTGAAGGATGTAATATTTTTCAGGTGTTAGCCC
CCTGGACATTCTGGCCTCCCGGAAAATTTTCTGATCCCCTTGGATAAAGA
ATTTAAACCCCAGACAACCAGTTTGATCAACCGAACTTGAGCCCCCTAAT
ATATCTTCTACCCCTATGTTCCTTTTCTGGAAGAGTCGAATCTGAGAAAG
AATAGGAAATATCAAACGTTTCTTTGATTTTCCAGATTTCGATGGTACAA
TGTTTATAACATCGATAATAAAAGATGATCCAAGTCCAATCCGGGAATTA
TTTGCAGAGGACCTTGAAGATGGATTAAATATATATGATGGCAACTTCAG
AGCACATCCATCTTTCGCTAGTAAACTCGAAAAACTAATTCGCTTCGATT
TCTTGAAATTCAAATGCCAAAAAACTGGTGTTGGATTTGAAGTAAAAATC
AAATCATTCAAATTGCACGAATGCTACAATGTTATGTTCTATTTTCTTGG
GGAAGCAACAATCGCAGACTCATCAAAATATTGTTTAAGAGGAAACTATA
AATATACCAGTGCTTTGTATAATGAATGGCCTACAAAAGGTGTGCCGGCA
GACCTTAGGCTATTTAAAGATATTTTAATAAAAGACGATTCAACCAAGAT
GACTTTTACGAATGATTCAATGCAGTGTTTTGGTGATGAAGGAACTTGGG
ATTTTTTTAATTTGAATATCGTATAAAATAATCATCTGAATGTTTATTTT
CAATAGCTGAGCACTTATTTTAACACAGCATAGATATTTTGGTTCATGAC
AGTTTCGTGACAGTACTTAAATCTTAGTCAACACGAGCCAGT

Coding sequence (CDS) from alignment at sc0000259:5469..8560-

>TCONS_00017111 ID=TCONS_00017111|Name=TCONS_00017111|organism=Clytia hemisphaerica|type=CDS|length=3519bp|location=Sequence derived from alignment at sc0000259:5469..8560- (Clytia hemisphaerica)
ATTTCGATGGTACAATGTTTATAACATCGATAATAAAAGATGATCCAAGT
CCAATCCGGGAATTATTTGCAGAGGACCTTGAAGATGGATTAAATATATA
TGATGGCAACTTCAGAGCACATCCATCTTTCGCTAGTAAACTCGAAAAAC
TAATTCGCTTCGATTTCTTGAAATTCAAATGCCAAAAAACTGGTGTTGGA
TTTGAAGTAAAAATCAAATCATTCAAATTGCACGAATGCTACAATGTTAT
GTTCTATTTTCTTGGGGAAGCAACAATCGCAGACTCATCAAAATATTGTT
TAAGAGGAAACTATAAATATACCAGTGCTTTGTATAATGAATGGCCTACA
AAAGGTGTGCCGGCAGACCTTAGGCTATTTAAAGATATTTTAATAAAAGA
CGATTCAACCAAGATGACTTTTACGAATGATTCAATGCAGTGTTTTGGTG
ATGAAGGAACTTGGGATTTTTTTAATTTGAATATCGTATAAATATTTTAT
ATGGACGAAATGCATCGTGCCGTGATTTGAAAAAAAATTTCCAGAATTAT
ATGGCAGGTATGTATTGGATTCACCCATGGAGAGATACAAGGAAAATCAA
AGTAAACTGCAATGGTGACGAATTTAAAAAGGTGGAATTGCTTTACAATA
TCATTACTATTGCCATACTTTGCCACCGTCAACCAAGAAGTTTACGCCGT
TAGTTTGGAAGAAATCGAAAACAGTTGGCACAAAACAACAACAAAAATAA
TCCAAACGACCACAGCAACGATCAAACTTAAAATCCAACGATACAAAGCA
TTCCCAAATCAAATGACTCGGGCTGGAGGTTACAAAAATGAAAAGAATCG
ATACACAATGAGAACATGTGCGGAGAAATGTACATCTGAAGCAACATGCG
CAAGTTTTAGTTATGAGTTACCTGGTACTAACTGCAGAAGATTTTCAGGT
GTTTATGCTAATTCACAATCATCAGCTATATATACTGGTGGTAATGTTCA
ATTCTTTGAGAAATTAAATCCTTGTAATAAGATACGAAATTTATGTGAAC
ATGGGAGTGAATGTGTACCTGATATCTTATCAAAGTCATATTCTTGTATC
AATTGTTTTTCACCTTACACTGGTAAACATTGCAACGAATCCGGACCAGT
TCACAACCCAAACATCTCTGAAGATTTCGATGGTACAATGTTTATAACAT
CGATAATAAAAGATGATCCAAGTCCAATCCGGGAATTATTTGCAGAGGAC
CTTGAAGATGGATTAAATATATATGATGGCAACTTCAGAGCACATCCATC
TTTCGCTAGTAAACTCGAAAAACTAATTCGCTTCGATTTCTTGAAATTCA
AATGCCAAAAAACTGGTGTTGGATTTGAAGTAAAAATCAAATCATTCAAA
TTGCACGAATGCTACAATGTTATGTTCTATTTTCTTGGGGAAGCAACAAT
CGCAGACTCATCAAAATATTGTTTAAGAGGAAACTATAAATATACCAGTG
CTTTGTATAATGAATGGCCTACAAAAGGTGTGCCGGCAGACCTTAGGCTA
TTTAAAGATATTTTAATAAAAGACGATTCAACCAAGATGACTTTTACGAA
TGATTCAATGCAGTGTTTTGGTGATGAAGGAACTTGGGATTTTTTTAATT
TGAATATCGTATAAATATTTTATATGGACGAAATGCATCGTGCCGTGATT
TGAAAAAAAATTTCCAGAATTATATGGCAGGTATGTATTGGATTCACCCA
TGGAGAGATACAAGGAAAATCAAAGTAAACTGCAATGGTGACGAATTTAA
AAAGGTGGAATTGCTTTACAATATCATTACTATTGCCATACTTTGCCACC
GTCAACCAAGAAGTTTACGCCGTTAGTTTGGAAGAAATCGAAAACAGTTG
GCACAAAACAACAACAAAAATAATCCAAACGACCACAGCAACGATCAAAC
TTAAAATCCAACGATACAAAGCATTCCCAAATCAAATGACTCGGGCTGGA
GGTTACAAAAATGAAAAGAATCGATACACAATGAGAACATGTGCGGAGAA
ATGTACATCTGAAGCAACATGCGCAAGTTTTAGTTATGAGTTACCTGGTA
CTAACTGCAGAAGATTTTCAGGTGTTTATGCTAATTCACAATCATCAGCT
ATATATACTGGTGGTAATGTTCAATTCTTTGAGAAATTAAATCCTTGTAA
TAAGATACGAAATTTATGTGAACATGGGAGTGAATGTGTACCTGATATCT
TATCAAAGTCATATTCTTGTATCAATTGTTTTTCACCTTACACTGGTAAA
CATTGCAACGAATCCGGACCAGTTCACAACCCAAACATCTCTGAAGATTT
CGATGGTACAATGTTTATAACATCGATAATAAAAGATGATCCAAGTCCAA
TCCGGGAATTATTTGCAGAGGACCTTGAAGATGGATTAAATATATATGAT
GGCAACTTCAGAGCACATCCATCTTTCGCTAGTAAACTCGAAAAACTAAT
TCGCTTCGATTTCTTGAAATTCAAATGCCAAAAAACTGGTGTTGGATTTG
AAGTAAAAATCAAATCATTCAAATTGCACGAATGCTACAATGTTATGTTC
TATTTTCTTGGGGAAGCAACAATCGCAGACTCATCAAAATATTGTTTAAG
AGGAAACTATAAATATACCAGTGCTTTGTATAATGAATGGCCTACAAAAG
GTGTGCCGGCAGACCTTAGGCTATTTAAAGATATTTTAATAAAAGACGAT
TCAACCAAGATGACTTTTACGAATGATTCAATGCAGTGTTTTGGTGATGA
AGGAACTTGGGATTTTTTTAATTTGAATATCGTATAAATATTTTATATGG
ACGAAATGCATCGTGCCGTGATTTGAAAAAAAATTTCCAGAATTATATGG
CAGGTATGTATTGGATTCACCCATGGAGAGATACAAGGAAAATCAAAGTA
AACTGCAATGGTGACGAATTTAAAAAGGTGGAATTGCTTTACAATATCAT
TACTATTGCCATACTTTGCCACCGTCAACCAAGAAGTTTACGCCGTTAGT
TTGGAAGAAATCGAAAACAGTTGGCACAAAACAACAACAAAAATAATCCA
AACGACCACAGCAACGATCAAACTTAAAATCCAACGATACAAAGCATTCC
CAAATCAAATGACTCGGGCTGGAGGTTACAAAAATGAAAAGAATCGATAC
ACAATGAGAACATGTGCGGAGAAATGTACATCTGAAGCAACATGCGCAAG
TTTTAGTTATGAGTTACCTGGTACTAACTGCAGAAGATTTTCAGGTGTTT
ATGCTAATTCACAATCATCAGCTATATATACTGGTGGTAATGTTCAATTC
TTTGAGAAATTAAATCCTTGTAATAAGATACGAAATTTATGTGAACATGG
GAGTGAATGTGTACCTGATATCTTATCAAAGTCATATTCTTGTATCAATT
GTTTTTCACCTTACACTGGTAAACATTGCAACGAATCCGGACCAGTTCAC
AACCCAAACATCTCTGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009568XLOC_009568Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017111-proteinTCONS_00017111-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017111-exon-sc0000259-1575043694:7885..8560TCONS_00017111-exon-sc0000259-1575043694:7885..8560Clytia hemisphaericaexon
TCONS_00017111-exon-sc0000259-1575043694:7022..7141TCONS_00017111-exon-sc0000259-1575043694:7022..7141Clytia hemisphaericaexon
TCONS_00017111-exon-sc0000259-1575043694:5469..6075TCONS_00017111-exon-sc0000259-1575043694:5469..6075Clytia hemisphaericaexon
TCONS_00017111-exon-sc0000259-1510915933:7885..8560TCONS_00017111-exon-sc0000259-1510915933:7885..8560Clytia hemisphaericaexon
TCONS_00017111-exon-sc0000259-1510915933:7022..7141TCONS_00017111-exon-sc0000259-1510915933:7022..7141Clytia hemisphaericaexon
TCONS_00017111-exon-sc0000259-1510915933:5469..6075TCONS_00017111-exon-sc0000259-1510915933:5469..6075Clytia hemisphaericaexon
TCONS_00017111-exon-sc0000259-1491911889:7885..8560TCONS_00017111-exon-sc0000259-1491911889:7885..8560Clytia hemisphaericaexon
TCONS_00017111-exon-sc0000259-1491911889:7022..7141TCONS_00017111-exon-sc0000259-1491911889:7022..7141Clytia hemisphaericaexon
TCONS_00017111-exon-sc0000259-1491911889:5469..6075TCONS_00017111-exon-sc0000259-1491911889:5469..6075Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000259supercontigsc0000259:5469..8560 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.0316639	0	0.071527	0.0250389	0.155073	0.0301036	0.118734	2.09471	2.11381	0.523039	0.380236	0	0.0914505	3.75873	2.31367	0.0861857	0.25223	0.340687	0.371681	1.02086	1.08192	0	0.21741	0.593631	0.268807
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003609Pan_app
IPR000742EGF-like_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017111 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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